Wall clock time and date at job start Wed Apr 1 2020 04:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28445 * 125.19782 * 2 1 4 4 C 1.31070 * 110.96500 * 180.29616 * 3 2 1 5 5 C 1.39527 * 107.59809 * 359.72710 * 4 3 2 6 6 C 1.36657 * 125.19470 * 179.84305 * 2 1 3 7 7 C 1.47165 * 126.94142 * 359.97438 * 6 2 1 8 8 O 1.21624 * 120.00073 * 91.82983 * 7 6 2 9 9 N 1.34782 * 120.00055 * 271.82822 * 7 6 2 10 10 C 1.47668 * 134.45372 * 175.10186 * 9 7 6 11 11 C 1.53449 * 85.97360 * 155.71358 * 10 9 7 12 12 C 1.47678 * 134.44994 * 355.10653 * 9 7 6 13 13 C 1.52628 * 113.71812 * 268.85465 * 11 10 9 14 14 C 1.53179 * 109.35620 * 171.27319 * 13 11 10 15 15 C 1.52661 * 109.43061 * 58.92628 * 14 13 11 16 16 N 1.46905 * 109.34751 * 303.77126 * 15 14 13 17 17 C 1.36932 * 120.69096 * 235.31008 * 16 15 14 18 18 H 1.08001 * 120.00055 * 148.84841 * 17 16 15 19 19 C 1.38817 * 120.00206 * 328.85322 * 17 16 15 20 20 N 1.31615 * 119.99435 * 335.64487 * 19 17 16 21 21 Si 1.86797 * 120.00040 * 155.64163 * 19 17 16 22 22 H 1.48501 * 109.47296 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47007 * 120.00236 * 21 19 17 24 24 H 1.48497 * 109.47016 * 239.99979 * 21 19 17 25 25 C 1.47120 * 118.61777 * 55.03493 * 16 15 14 26 26 C 1.50850 * 109.87901 * 180.02562 * 5 4 3 27 27 C 1.54426 * 105.16980 * 17.05933 * 26 5 4 28 28 C 1.51268 * 143.02191 * 179.73250 * 4 3 2 29 29 H 1.08999 * 109.47215 * 268.82437 * 1 2 3 30 30 H 1.09004 * 109.47461 * 28.82406 * 1 2 3 31 31 H 1.09005 * 109.47559 * 148.82251 * 1 2 3 32 32 H 1.08999 * 113.79342 * 41.45487 * 10 9 7 33 33 H 1.08998 * 113.79374 * 269.97297 * 10 9 7 34 34 H 1.09001 * 113.79205 * 90.02243 * 12 9 7 35 35 H 1.08994 * 113.79351 * 318.54778 * 12 9 7 36 36 H 1.09002 * 109.48723 * 291.23731 * 13 11 10 37 37 H 1.08998 * 109.49147 * 51.30254 * 13 11 10 38 38 H 1.08999 * 109.49462 * 179.02694 * 14 13 11 39 39 H 1.09007 * 109.48725 * 299.09327 * 14 13 11 40 40 H 1.09000 * 109.44215 * 183.78700 * 15 14 13 41 41 H 1.09004 * 109.37183 * 63.70993 * 15 14 13 42 42 H 0.96994 * 120.00647 * 354.52690 * 20 19 17 43 43 H 1.09001 * 109.63335 * 68.57919 * 25 16 15 44 44 H 1.08996 * 109.63857 * 189.19204 * 25 16 15 45 45 H 1.08999 * 110.30461 * 135.98151 * 26 5 4 46 46 H 1.09002 * 110.30288 * 258.03671 * 26 5 4 47 47 H 1.09001 * 110.78071 * 92.01164 * 27 26 5 48 48 H 1.09000 * 110.78157 * 215.26741 * 27 26 5 49 49 H 1.08996 * 110.28664 * 43.91172 * 28 4 3 50 50 H 1.09004 * 110.36541 * 281.84794 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0496 0.0000 4 6 3.4758 0.7274 -0.0063 5 6 3.5578 -0.6655 -0.0045 6 6 2.2526 -1.1168 0.0031 7 6 1.8012 -2.5174 0.0074 8 8 1.6463 -3.1097 -1.0435 9 7 1.5595 -3.1440 1.1760 10 6 1.0251 -4.4695 1.5476 11 6 1.7921 -4.2895 2.8644 12 6 1.7228 -2.7797 2.5978 13 6 3.2100 -4.8534 2.8310 14 6 3.9538 -4.4326 4.1022 15 6 3.2027 -4.9518 5.3256 16 7 1.8188 -4.4598 5.2921 17 6 1.3000 -3.7600 6.3485 18 1 0.5506 -3.0013 6.1778 19 6 1.7375 -4.0255 7.6389 20 7 2.2500 -5.2021 7.9309 21 14 1.5987 -2.7130 8.9608 22 1 0.9918 -1.4882 8.3805 23 1 0.7426 -3.2128 10.0666 24 1 2.9506 -2.3949 9.4864 25 6 1.0039 -4.7294 4.0972 26 6 5.0040 -1.0943 -0.0110 27 6 5.7986 0.1577 0.4203 28 6 4.8708 1.3122 -0.0147 29 1 -0.3633 -0.0211 1.0274 30 1 -0.3634 0.9004 -0.4955 31 1 -0.3634 -0.8792 -0.5320 32 1 1.4001 -5.2842 0.9282 33 1 -0.0579 -4.4888 1.6688 34 1 0.8473 -2.2964 3.0313 35 1 2.6520 -2.2521 2.8127 36 1 3.1675 -5.9413 2.7778 37 1 3.7348 -4.4666 1.9576 38 1 4.9612 -4.8486 4.0888 39 1 4.0098 -3.3449 4.1476 40 1 3.6941 -4.5959 6.2312 41 1 3.2023 -6.0418 5.3140 42 1 2.2497 -5.9095 7.2673 43 1 0.7894 -5.7962 4.0333 44 1 0.0715 -4.1681 4.1555 45 1 5.1612 -1.9054 0.6999 46 1 5.3015 -1.4065 -1.0120 47 1 5.9480 0.1679 1.5000 48 1 6.7543 0.2079 -0.1014 49 1 4.9384 2.1387 0.6927 50 1 5.1342 1.6508 -1.0168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982113351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:24 Heat of formation + Delta-G solvation = 107.066076 kcal Electronic energy + Delta-G solvation = -31595.255848 eV Core-core repulsion = 27626.081942 eV Total energy + Delta-G solvation = -3969.173906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.76847 -40.63538 -38.30211 -37.08243 -36.09592 -32.92310 -32.37835 -31.29782 -30.63385 -29.73933 -27.69238 -26.67847 -26.24757 -25.97118 -25.22340 -22.70006 -22.40001 -21.41369 -20.53266 -20.36196 -18.76054 -17.99651 -17.40027 -17.31740 -16.80224 -16.02702 -15.86472 -15.49981 -15.18539 -14.58488 -14.26137 -14.17965 -13.91679 -13.67335 -13.56405 -13.26629 -13.16267 -13.09549 -12.93207 -12.83923 -12.63761 -12.43853 -12.04376 -11.96897 -11.85563 -11.50184 -11.34044 -11.17022 -11.13926 -10.78310 -10.52987 -10.46150 -10.34524 -10.16497 -10.07340 -9.99255 -9.83543 -9.32143 -9.07259 -8.72707 -8.65711 -8.41435 -6.92830 -6.12839 -3.33864 1.57522 1.96328 2.49031 2.61991 2.86848 3.46583 3.48732 3.61765 3.74195 4.16982 4.43732 4.58984 4.62461 4.65451 4.82838 4.87898 4.93065 4.96935 5.08172 5.11042 5.13539 5.24428 5.38520 5.42734 5.48334 5.53602 5.56992 5.59200 5.63012 5.65961 5.75084 5.75659 5.82467 5.83582 5.87980 5.95327 6.04152 6.09120 6.22409 6.35972 6.40038 6.41787 6.51645 6.59317 6.64643 6.70959 7.00890 7.13510 7.57955 7.94545 7.96692 7.98592 8.52095 9.04038 9.76693 10.22522 11.15018 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.003433 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.173222 B = 8154.631877 C = 8635.274044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.273 5.273 3 N -0.268 5.268 4 C 0.007 3.993 5 C -0.185 4.185 6 C 0.000 4.000 7 C 0.612 3.388 8 O -0.534 6.534 9 N -0.629 5.629 10 C 0.116 3.884 11 C -0.101 4.101 12 C 0.125 3.875 13 C -0.083 4.083 14 C -0.136 4.136 15 C 0.151 3.849 16 N -0.594 5.594 17 C -0.352 4.352 18 H 0.054 0.946 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.067 2.933 22 H -0.292 1.292 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.164 3.836 26 C -0.043 4.043 27 C -0.115 4.115 28 C -0.025 4.025 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.017 0.983 42 H 0.270 0.730 43 H 0.024 0.976 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 8.267 -15.250 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.061 5.061 3 N -0.098 5.098 4 C -0.152 4.152 5 C -0.195 4.195 6 C -0.128 4.128 7 C 0.398 3.602 8 O -0.410 6.410 9 N -0.363 5.363 10 C -0.006 4.006 11 C -0.103 4.103 12 C 0.003 3.997 13 C -0.121 4.121 14 C -0.175 4.175 15 C 0.025 3.975 16 N -0.318 5.318 17 C -0.481 4.481 18 H 0.072 0.928 19 C -0.222 4.222 20 N -0.552 5.552 21 Si 0.897 3.103 22 H -0.218 1.218 23 H -0.221 1.221 24 H -0.216 1.216 25 C 0.037 3.963 26 C -0.081 4.081 27 C -0.153 4.153 28 C -0.064 4.064 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.098 0.902 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.829 9.329 -14.381 17.239 hybrid contribution -0.217 -0.940 -1.645 1.906 sum 1.613 8.390 -16.025 18.160 Atomic orbital electron populations 1.22149 0.72787 1.05387 1.04562 1.45618 1.07204 1.01005 1.52296 1.72647 1.02977 1.12658 1.21544 1.22713 0.92637 0.94273 1.05613 1.21117 0.93785 0.95579 1.09042 1.20359 0.90936 0.88751 1.12738 1.16630 0.77251 0.83656 0.82690 1.90822 1.52704 1.66640 1.30814 1.50152 1.62148 1.18507 1.05486 1.23334 0.98968 0.84424 0.93922 1.22599 0.97550 0.94720 0.95441 1.23279 1.02220 0.97755 0.76481 1.21113 0.92968 0.99996 0.97994 1.21987 0.98060 1.01129 0.96298 1.20817 0.85276 0.95379 0.96056 1.44067 1.07167 1.65229 1.15321 1.19926 1.26345 1.15237 0.86620 0.92848 1.25852 0.99241 0.99950 0.97149 1.70712 1.46284 1.01459 1.36773 0.83504 0.76468 0.74816 0.75513 1.21836 1.22064 1.21616 1.20782 0.92945 0.97326 0.85257 1.20363 0.87457 0.98290 1.02039 1.22381 0.97807 0.93041 1.02076 1.20392 0.85387 0.98107 1.02481 0.89526 0.88128 0.89022 0.89963 0.89348 0.89582 0.90067 0.91935 0.93020 0.92781 0.92384 0.90524 0.96519 0.91874 0.95845 0.92288 0.90776 0.90327 0.90420 0.89828 0.90235 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 11.15 59.85 0.67 1.57 16 2 N -0.27 -3.83 3.75 -63.95 -0.24 -4.07 16 3 N -0.27 -3.97 11.91 33.78 0.40 -3.56 16 4 C 0.01 0.09 8.13 -82.16 -0.67 -0.57 16 5 C -0.18 -2.65 7.02 -104.12 -0.73 -3.38 16 6 C 0.00 -0.01 6.45 -82.15 -0.53 -0.54 16 7 C 0.61 9.86 7.34 -12.63 -0.09 9.76 16 8 O -0.53 -10.08 17.84 5.26 0.09 -9.98 16 9 N -0.63 -9.21 3.45 -181.83 -0.63 -9.84 16 10 C 0.12 1.56 7.98 -3.18 -0.03 1.54 16 11 C -0.10 -1.53 0.87 -154.43 -0.13 -1.67 16 12 C 0.12 1.87 7.57 -3.16 -0.02 1.84 16 13 C -0.08 -1.28 5.02 -26.83 -0.13 -1.41 16 14 C -0.14 -2.34 5.99 -26.81 -0.16 -2.50 16 15 C 0.15 3.24 4.66 -3.99 -0.02 3.23 16 16 N -0.59 -13.51 2.82 -172.74 -0.49 -13.99 16 17 C -0.35 -9.13 9.47 -15.06 -0.14 -9.28 16 18 H 0.05 1.40 7.94 -52.49 -0.42 0.98 16 19 C -0.02 -0.51 4.68 -17.43 -0.08 -0.59 16 20 N -0.91 -26.17 12.51 55.49 0.69 -25.47 16 21 Si 1.07 24.32 29.98 -169.99 -5.10 19.22 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.16 3.03 5.71 -3.81 -0.02 3.00 16 26 C -0.04 -0.49 6.76 -27.06 -0.18 -0.67 16 27 C -0.12 -0.99 7.07 -25.27 -0.18 -1.17 16 28 C -0.02 -0.24 6.76 -26.89 -0.18 -0.42 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.86 7.83 -51.93 -0.41 0.46 16 32 H 0.08 1.09 8.09 -51.93 -0.42 0.66 16 33 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.09 1.29 7.97 -51.93 -0.41 0.87 16 35 H 0.08 1.30 7.37 -51.93 -0.38 0.92 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.77 8.02 -51.93 -0.42 0.35 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.04 7.37 -51.93 -0.38 0.66 16 40 H 0.08 1.89 6.44 -51.93 -0.33 1.56 16 41 H 0.02 0.37 7.93 -51.93 -0.41 -0.04 16 42 H 0.27 7.79 6.84 -40.82 -0.28 7.51 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.08 7.78 -51.93 -0.40 0.67 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 397.42 15.07 5.99 5.99 Total: -1.00 -32.76 397.42 -10.05 -42.81 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.13 Total: 0.15 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.64 Total: -1.25 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.26 Total: -56.94 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.10 Total: 19.22 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.76 -10.05 -42.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982113351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.875 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds