Wall clock time and date at job start Wed Apr 1 2020 04:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28445 * 125.19782 * 2 1 4 4 C 1.31070 * 110.96500 * 180.29616 * 3 2 1 5 5 C 1.39527 * 107.59809 * 359.72710 * 4 3 2 6 6 C 1.36657 * 125.19470 * 179.84305 * 2 1 3 7 7 C 1.47165 * 126.94142 * 359.97438 * 6 2 1 8 8 O 1.21624 * 120.00073 * 91.82983 * 7 6 2 9 9 N 1.34782 * 120.00055 * 271.82822 * 7 6 2 10 10 C 1.47668 * 134.45372 * 175.10186 * 9 7 6 11 11 C 1.53449 * 85.97360 * 155.71358 * 10 9 7 12 12 C 1.47678 * 134.44994 * 355.10653 * 9 7 6 13 13 C 1.52628 * 113.71812 * 268.85465 * 11 10 9 14 14 C 1.53179 * 109.35620 * 171.27319 * 13 11 10 15 15 C 1.52661 * 109.43061 * 58.92628 * 14 13 11 16 16 N 1.46905 * 109.34751 * 303.77126 * 15 14 13 17 17 C 1.36932 * 120.69096 * 235.31008 * 16 15 14 18 18 H 1.08001 * 120.00055 * 148.84841 * 17 16 15 19 19 C 1.38817 * 120.00206 * 328.85322 * 17 16 15 20 20 N 1.31615 * 119.99435 * 335.64487 * 19 17 16 21 21 Si 1.86797 * 120.00040 * 155.64163 * 19 17 16 22 22 H 1.48501 * 109.47296 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47007 * 120.00236 * 21 19 17 24 24 H 1.48497 * 109.47016 * 239.99979 * 21 19 17 25 25 C 1.47120 * 118.61777 * 55.03493 * 16 15 14 26 26 C 1.50850 * 109.87901 * 180.02562 * 5 4 3 27 27 C 1.54426 * 105.16980 * 17.05933 * 26 5 4 28 28 C 1.51268 * 143.02191 * 179.73250 * 4 3 2 29 29 H 1.08999 * 109.47215 * 268.82437 * 1 2 3 30 30 H 1.09004 * 109.47461 * 28.82406 * 1 2 3 31 31 H 1.09005 * 109.47559 * 148.82251 * 1 2 3 32 32 H 1.08999 * 113.79342 * 41.45487 * 10 9 7 33 33 H 1.08998 * 113.79374 * 269.97297 * 10 9 7 34 34 H 1.09001 * 113.79205 * 90.02243 * 12 9 7 35 35 H 1.08994 * 113.79351 * 318.54778 * 12 9 7 36 36 H 1.09002 * 109.48723 * 291.23731 * 13 11 10 37 37 H 1.08998 * 109.49147 * 51.30254 * 13 11 10 38 38 H 1.08999 * 109.49462 * 179.02694 * 14 13 11 39 39 H 1.09007 * 109.48725 * 299.09327 * 14 13 11 40 40 H 1.09000 * 109.44215 * 183.78700 * 15 14 13 41 41 H 1.09004 * 109.37183 * 63.70993 * 15 14 13 42 42 H 0.96994 * 120.00647 * 354.52690 * 20 19 17 43 43 H 1.09001 * 109.63335 * 68.57919 * 25 16 15 44 44 H 1.08996 * 109.63857 * 189.19204 * 25 16 15 45 45 H 1.08999 * 110.30461 * 135.98151 * 26 5 4 46 46 H 1.09002 * 110.30288 * 258.03671 * 26 5 4 47 47 H 1.09001 * 110.78071 * 92.01164 * 27 26 5 48 48 H 1.09000 * 110.78157 * 215.26741 * 27 26 5 49 49 H 1.08996 * 110.28664 * 43.91172 * 28 4 3 50 50 H 1.09004 * 110.36541 * 281.84794 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0496 0.0000 4 6 3.4758 0.7274 -0.0063 5 6 3.5578 -0.6655 -0.0045 6 6 2.2526 -1.1168 0.0031 7 6 1.8012 -2.5174 0.0074 8 8 1.6463 -3.1097 -1.0435 9 7 1.5595 -3.1440 1.1760 10 6 1.0251 -4.4695 1.5476 11 6 1.7921 -4.2895 2.8644 12 6 1.7228 -2.7797 2.5978 13 6 3.2100 -4.8534 2.8310 14 6 3.9538 -4.4326 4.1022 15 6 3.2027 -4.9518 5.3256 16 7 1.8188 -4.4598 5.2921 17 6 1.3000 -3.7600 6.3485 18 1 0.5506 -3.0013 6.1778 19 6 1.7375 -4.0255 7.6389 20 7 2.2500 -5.2021 7.9309 21 14 1.5987 -2.7130 8.9608 22 1 0.9918 -1.4882 8.3805 23 1 0.7426 -3.2128 10.0666 24 1 2.9506 -2.3949 9.4864 25 6 1.0039 -4.7294 4.0972 26 6 5.0040 -1.0943 -0.0110 27 6 5.7986 0.1577 0.4203 28 6 4.8708 1.3122 -0.0147 29 1 -0.3633 -0.0211 1.0274 30 1 -0.3634 0.9004 -0.4955 31 1 -0.3634 -0.8792 -0.5320 32 1 1.4001 -5.2842 0.9282 33 1 -0.0579 -4.4888 1.6688 34 1 0.8473 -2.2964 3.0313 35 1 2.6520 -2.2521 2.8127 36 1 3.1675 -5.9413 2.7778 37 1 3.7348 -4.4666 1.9576 38 1 4.9612 -4.8486 4.0888 39 1 4.0098 -3.3449 4.1476 40 1 3.6941 -4.5959 6.2312 41 1 3.2023 -6.0418 5.3140 42 1 2.2497 -5.9095 7.2673 43 1 0.7894 -5.7962 4.0333 44 1 0.0715 -4.1681 4.1555 45 1 5.1612 -1.9054 0.6999 46 1 5.3015 -1.4065 -1.0120 47 1 5.9480 0.1679 1.5000 48 1 6.7543 0.2079 -0.1014 49 1 4.9384 2.1387 0.6927 50 1 5.1342 1.6508 -1.0168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982113351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:23 Heat of formation + Delta-G solvation = 88.486277 kcal Electronic energy + Delta-G solvation = -31596.061529 eV Core-core repulsion = 27626.081942 eV Total energy + Delta-G solvation = -3969.979586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.77439 -41.90888 -39.65266 -37.92537 -37.70292 -34.61694 -33.30920 -32.49886 -32.20254 -31.10764 -28.60387 -27.62534 -27.45246 -27.20474 -27.02145 -24.06273 -23.76692 -22.50862 -21.86619 -21.38405 -19.92037 -19.33727 -19.23920 -18.42615 -17.87742 -17.09896 -17.05215 -16.60638 -16.29451 -15.97235 -15.89956 -15.46374 -15.35904 -15.10768 -14.83124 -14.67924 -14.35465 -13.99872 -13.88523 -13.78958 -13.71724 -13.56988 -13.43834 -13.30666 -12.99751 -12.78261 -12.74993 -12.53558 -12.08650 -12.03104 -11.88895 -11.85193 -11.82499 -11.70766 -11.49188 -11.37990 -11.27539 -11.06774 -10.41683 -10.13379 -9.94478 -9.62070 -8.85375 -8.18072 -5.38216 0.50048 0.87869 1.44396 1.53151 1.61032 1.67354 1.77542 1.82607 2.66144 2.84809 3.00812 3.19557 3.32248 3.62020 3.71271 3.83856 3.85719 3.86422 4.11554 4.15010 4.16922 4.18995 4.24558 4.24779 4.28484 4.38249 4.43129 4.47248 4.54235 4.56710 4.65971 4.71852 4.79980 4.82099 4.83867 4.86943 4.98082 5.00100 5.02817 5.03329 5.17654 5.18134 5.22439 5.33266 5.35519 5.44993 5.49486 5.75425 5.91386 6.34439 6.45553 6.73218 6.96104 7.11068 7.81253 8.27973 9.05669 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.003433 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.173222 B = 8154.631877 C = 8635.274044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.277 5.277 3 N -0.287 5.287 4 C -0.005 4.005 5 C -0.202 4.202 6 C -0.026 4.026 7 C 0.618 3.382 8 O -0.566 6.566 9 N -0.622 5.622 10 C 0.122 3.878 11 C -0.094 4.094 12 C 0.131 3.869 13 C -0.077 4.077 14 C -0.123 4.123 15 C 0.157 3.843 16 N -0.611 5.611 17 C -0.348 4.348 18 H 0.050 0.950 19 C -0.070 4.070 20 N -0.943 5.943 21 Si 1.111 2.889 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.290 1.290 25 C 0.165 3.835 26 C -0.047 4.047 27 C -0.105 4.105 28 C -0.024 4.024 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.039 0.961 41 H 0.006 0.994 42 H 0.256 0.744 43 H 0.025 0.975 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.090 0.910 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 9.474 -16.489 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.065 5.065 3 N -0.118 5.118 4 C -0.164 4.164 5 C -0.212 4.212 6 C -0.154 4.154 7 C 0.405 3.595 8 O -0.444 6.444 9 N -0.355 5.355 10 C 0.001 3.999 11 C -0.096 4.096 12 C 0.009 3.991 13 C -0.114 4.114 14 C -0.162 4.162 15 C 0.032 3.968 16 N -0.335 5.335 17 C -0.478 4.478 18 H 0.068 0.932 19 C -0.267 4.267 20 N -0.585 5.585 21 Si 0.937 3.063 22 H -0.199 1.199 23 H -0.221 1.221 24 H -0.217 1.217 25 C 0.039 3.961 26 C -0.085 4.085 27 C -0.142 4.142 28 C -0.063 4.063 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.131 0.869 49 H 0.108 0.892 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.281 10.543 -15.639 18.999 hybrid contribution -0.413 -1.332 -1.296 1.903 sum 1.869 9.211 -16.935 19.368 Atomic orbital electron populations 1.22424 0.71108 1.06479 1.05596 1.45962 1.08272 1.00442 1.51815 1.72609 1.03787 1.13159 1.22256 1.23480 0.93529 0.94636 1.04763 1.21689 0.94748 0.96283 1.08523 1.20447 0.91875 0.88723 1.14364 1.16670 0.76585 0.83882 0.82336 1.90799 1.54325 1.67503 1.31822 1.50086 1.61620 1.18777 1.05029 1.23414 0.99961 0.84175 0.92376 1.22412 0.97460 0.94924 0.94852 1.23184 1.01920 0.97341 0.76617 1.21064 0.92678 1.00523 0.97149 1.21817 0.98703 1.00551 0.95106 1.20664 0.85138 0.94590 0.96454 1.44263 1.08178 1.65234 1.15833 1.20148 1.25438 1.14684 0.87513 0.93187 1.27006 0.99479 1.00779 0.99464 1.70828 1.48951 1.02139 1.36587 0.82901 0.76385 0.73464 0.73561 1.19891 1.22088 1.21674 1.20859 0.92987 0.97434 0.84814 1.20520 0.86144 0.99437 1.02391 1.22404 0.98419 0.91003 1.02416 1.20599 0.83174 0.98669 1.03888 0.88430 0.86247 0.88832 0.89042 0.87318 0.89355 0.90957 0.91158 0.91783 0.90848 0.93028 0.94248 0.97636 0.93395 0.95750 0.92146 0.91290 0.89653 0.90445 0.86875 0.89152 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 11.15 127.77 1.42 2.97 16 2 N -0.28 -7.55 3.75 -356.22 -1.34 -8.88 16 3 N -0.29 -8.25 11.91 -47.03 -0.56 -8.81 16 4 C -0.01 -0.14 8.13 43.16 0.35 0.21 16 5 C -0.20 -5.58 7.02 -19.54 -0.14 -5.72 16 6 C -0.03 -0.79 6.45 40.70 0.26 -0.53 16 7 C 0.62 19.31 7.34 86.59 0.64 19.95 16 8 O -0.57 -20.94 17.84 -4.11 -0.07 -21.02 16 9 N -0.62 -17.22 3.45 -847.42 -2.92 -20.14 16 10 C 0.12 3.02 7.98 86.30 0.69 3.71 16 11 C -0.09 -2.71 0.87 -52.03 -0.05 -2.76 16 12 C 0.13 3.76 7.57 86.31 0.65 4.41 16 13 C -0.08 -2.20 5.02 30.53 0.15 -2.05 16 14 C -0.12 -4.11 5.99 30.54 0.18 -3.93 16 15 C 0.16 6.85 4.66 86.19 0.40 7.26 16 16 N -0.61 -27.79 2.82 -700.44 -1.97 -29.77 16 17 C -0.35 -18.11 9.47 84.04 0.80 -17.31 16 18 H 0.05 2.60 7.94 -2.91 -0.02 2.58 16 19 C -0.07 -3.80 4.68 84.86 0.40 -3.41 16 20 N -0.94 -55.39 12.51 21.65 0.27 -55.12 16 21 Si 1.11 49.30 29.98 68.60 2.06 51.35 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.16 5.92 5.71 86.19 0.49 6.41 16 26 C -0.05 -0.97 6.76 30.38 0.21 -0.77 16 27 C -0.10 -1.52 7.07 31.54 0.22 -1.29 16 28 C -0.02 -0.41 6.76 30.49 0.21 -0.21 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.09 1.69 7.83 -2.38 -0.02 1.67 16 32 H 0.09 2.16 8.09 -2.39 -0.02 2.14 16 33 H 0.11 2.29 8.09 -2.39 -0.02 2.27 16 34 H 0.09 2.51 7.97 -2.39 -0.02 2.49 16 35 H 0.07 2.23 7.37 -2.39 -0.02 2.21 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.06 1.74 8.02 -2.39 -0.02 1.72 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 1.80 7.37 -2.38 -0.02 1.78 16 40 H 0.04 2.00 6.44 -2.39 -0.02 1.98 16 41 H 0.01 0.25 7.93 -2.38 -0.02 0.24 16 42 H 0.26 15.28 6.84 -92.71 -0.63 14.64 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 2.14 7.78 -2.39 -0.02 2.12 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -71.81 397.42 3.42 -68.39 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.07 Total: 17.03 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 6.89 Total: 6.96 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -6.52 Total: -122.72 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.07 Total: -21.02 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.06 Total: 51.35 kcal Total: -71.81 3.42 -68.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982113351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.879 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds