Wall clock time and date at job start Wed Apr 1 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46966 * 2 1 4 4 C 1.50697 * 109.46957 * 119.99782 * 2 1 3 5 5 O 1.21285 * 120.00266 * 119.99872 * 4 2 1 6 6 N 1.34778 * 119.99900 * 299.99882 * 4 2 1 7 7 C 1.48112 * 127.84341 * 179.97438 * 6 4 2 8 8 C 1.54315 * 104.71486 * 140.22691 * 7 6 4 9 9 C 1.52995 * 112.07696 * 146.94287 * 8 7 6 10 10 C 1.53758 * 109.07685 * 271.63892 * 8 7 6 11 11 N 1.47207 * 106.40556 * 94.29057 * 10 8 7 12 12 C 1.36940 * 126.69996 * 211.29710 * 11 10 8 13 13 H 1.08003 * 119.99479 * 165.69096 * 12 11 10 14 14 C 1.38804 * 120.00008 * 345.68472 * 12 11 10 15 15 N 1.31622 * 120.00247 * 350.70749 * 14 12 11 16 16 Si 1.86810 * 119.99877 * 170.70703 * 14 12 11 17 17 H 1.48499 * 109.47137 * 59.99982 * 16 14 12 18 18 H 1.48496 * 109.47053 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46625 * 300.00079 * 16 14 12 20 20 C 1.47206 * 106.59396 * 31.55360 * 11 10 8 21 21 C 1.54037 * 106.26339 * 328.37584 * 20 11 10 22 22 C 1.52997 * 112.76881 * 141.67630 * 21 20 11 23 23 C 1.48108 * 127.84596 * 0.02562 * 6 4 2 24 24 C 1.50695 * 109.47099 * 239.99468 * 2 1 3 25 25 C 1.38594 * 120.80523 * 299.72388 * 24 2 1 26 26 N 1.32335 * 119.11071 * 179.71770 * 25 24 2 27 27 C 1.31795 * 120.81143 * 0.56865 * 26 25 24 28 28 N 1.31797 * 121.75682 * 359.70332 * 27 26 25 29 29 C 1.32328 * 120.81802 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47230 * 300.00401 * 1 2 3 32 32 H 1.09003 * 109.46677 * 60.00079 * 1 2 3 33 33 H 1.08996 * 110.38927 * 21.41299 * 7 6 4 34 34 H 1.09003 * 110.48633 * 259.08136 * 7 6 4 35 35 H 1.09004 * 109.47324 * 182.01261 * 9 8 7 36 36 H 1.09003 * 109.47343 * 302.00824 * 9 8 7 37 37 H 1.09005 * 109.47450 * 62.01118 * 9 8 7 38 38 H 1.08994 * 110.06959 * 335.05428 * 10 8 7 39 39 H 1.08999 * 110.07147 * 213.51951 * 10 8 7 40 40 H 0.97001 * 120.00021 * 180.02562 * 15 14 12 41 41 H 1.09001 * 110.06421 * 87.68860 * 20 11 10 42 42 H 1.08993 * 110.06556 * 209.21464 * 20 11 10 43 43 H 1.08998 * 109.47058 * 301.37785 * 22 21 20 44 44 H 1.09003 * 109.47583 * 61.37569 * 22 21 20 45 45 H 1.08998 * 109.47435 * 181.38184 * 22 21 20 46 46 H 1.09003 * 110.39187 * 338.59090 * 23 6 4 47 47 H 1.09002 * 110.39119 * 100.85612 * 23 6 4 48 48 H 1.08008 * 120.44507 * 0.02562 * 25 24 2 49 49 H 1.08003 * 119.12237 * 179.68259 * 27 26 25 50 50 H 1.07998 * 120.44933 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1000 -0.8070 3.7693 8 6 2.3964 0.4282 4.6457 9 6 2.0342 0.1922 6.1133 10 6 3.8714 0.8258 4.4714 11 7 3.9027 1.8575 3.4218 12 6 4.9148 2.0851 2.5279 13 1 4.7409 2.7069 1.6621 14 6 6.1642 1.5169 2.7347 15 7 6.4327 0.9139 3.8734 16 14 7.4647 1.6079 1.3967 17 1 7.7634 3.0304 1.0926 18 1 8.7015 0.9302 1.8616 19 1 6.9626 0.9348 0.1719 20 6 2.6362 2.6006 3.5249 21 6 1.5833 1.5919 4.0217 22 6 0.5976 2.2068 5.0171 23 6 0.8735 0.9277 2.7904 24 6 2.0323 -0.7105 -1.2304 25 6 1.7125 -2.0388 -1.4633 26 7 2.1670 -2.6281 -2.5575 27 6 2.9236 -1.9711 -3.4135 28 7 3.2526 -0.7092 -3.2222 29 6 2.8305 -0.0532 -2.1533 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.9927 -1.4241 3.6685 34 1 1.2834 -1.3888 4.1968 35 1 2.2263 1.0999 6.6854 36 1 0.9787 -0.0688 6.1897 37 1 2.6396 -0.6226 6.5105 38 1 4.4581 -0.0395 4.1630 39 1 4.2626 1.2301 5.4049 40 1 7.3060 0.5171 4.0180 41 1 2.7396 3.4187 4.2378 42 1 2.3501 2.9894 2.5477 43 1 1.1441 2.5977 5.8753 44 1 0.0516 3.0174 4.5343 45 1 -0.1053 1.4436 5.3510 46 1 0.8395 1.6211 1.9500 47 1 -0.1340 0.6144 3.0642 48 1 1.0963 -2.5841 -0.7636 49 1 3.2839 -2.4803 -4.2952 50 1 3.1034 0.9809 -2.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982475588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:58 Heat of formation + Delta-G solvation = 48.118838 kcal Electronic energy + Delta-G solvation = -32511.504091 eV Core-core repulsion = 28539.774041 eV Total energy + Delta-G solvation = -3971.730050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.15085 -40.30486 -38.47330 -34.81222 -34.67606 -33.60423 -33.02469 -31.72544 -30.72332 -30.13266 -26.89447 -26.05286 -25.78057 -25.13866 -24.96184 -24.44092 -22.85049 -21.87523 -20.01689 -19.11309 -17.83900 -17.74556 -17.55910 -16.85640 -16.18585 -15.62799 -15.59329 -14.73842 -14.56574 -14.49291 -14.00313 -13.88358 -13.62347 -13.50970 -13.49536 -13.40865 -13.26829 -12.88979 -12.73040 -12.48745 -12.19955 -12.00366 -11.72426 -11.61064 -11.53826 -11.40709 -11.39546 -10.84285 -10.81145 -10.75583 -10.71147 -10.68468 -10.09034 -10.08661 -9.84810 -9.74423 -9.57126 -9.55507 -9.28027 -9.13953 -8.66357 -8.26321 -6.80583 -5.77863 -3.10712 0.93723 1.17750 2.95481 3.24800 3.39529 3.45537 3.47120 3.86983 4.17734 4.28944 4.47251 4.49331 4.56832 4.67318 4.69579 4.88343 5.00133 5.07266 5.16029 5.30836 5.37620 5.42035 5.46412 5.51067 5.54989 5.57394 5.61942 5.67034 5.69099 5.83520 5.85559 5.90394 6.02263 6.04229 6.07336 6.10520 6.23941 6.27372 6.41449 6.42672 6.45146 6.53800 6.62307 6.79384 6.89293 7.00667 7.38238 7.55356 7.74033 7.93369 8.12629 8.25361 8.50139 9.15552 9.78739 10.50156 11.35954 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.005316 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.589540 B = 5265.496990 C = 7248.439966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 H 0.112 0.888 4 C 0.548 3.452 5 O -0.538 6.538 6 N -0.601 5.601 7 C 0.126 3.874 8 C -0.099 4.099 9 C -0.123 4.123 10 C 0.182 3.818 11 N -0.588 5.588 12 C -0.229 4.229 13 H 0.071 0.929 14 C 0.001 3.999 15 N -0.913 5.913 16 Si 0.904 3.096 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.146 3.854 21 C -0.086 4.086 22 C -0.123 4.123 23 C 0.115 3.885 24 C -0.164 4.164 25 C 0.180 3.820 26 N -0.523 5.523 27 C 0.285 3.715 28 N -0.521 5.521 29 C 0.158 3.842 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.018 0.982 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.161 0.839 49 H 0.193 0.807 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.776 -0.420 -2.958 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 H 0.130 0.870 4 C 0.336 3.664 5 O -0.415 6.415 6 N -0.332 5.332 7 C 0.004 3.996 8 C -0.102 4.102 9 C -0.181 4.181 10 C 0.056 3.944 11 N -0.312 5.312 12 C -0.357 4.357 13 H 0.089 0.911 14 C -0.196 4.196 15 N -0.559 5.559 16 Si 0.734 3.266 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.211 1.211 20 C 0.019 3.981 21 C -0.088 4.088 22 C -0.181 4.181 23 C -0.008 4.008 24 C -0.168 4.168 25 C 0.014 3.986 26 N -0.237 5.237 27 C -0.003 4.003 28 N -0.235 5.235 29 C -0.008 4.008 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.179 0.821 49 H 0.210 0.790 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.760 -1.538 -4.020 16.337 hybrid contribution 0.695 0.580 0.201 0.927 sum -15.066 -0.958 -3.819 15.572 Atomic orbital electron populations 1.21927 0.91912 1.03017 1.03377 1.20064 0.97487 1.00800 0.89838 0.86999 1.19658 0.79767 0.84219 0.82718 1.90722 1.37825 1.27180 1.85759 1.48452 1.50735 1.29127 1.04933 1.22341 1.00014 0.95716 0.81558 1.22570 1.00198 0.93487 0.93919 1.21626 1.00088 1.01744 0.94599 1.21189 0.88132 0.93654 0.91412 1.44286 1.15472 1.33841 1.37560 1.18798 0.88336 1.28206 1.00344 0.91108 1.24795 0.96905 1.01150 0.96773 1.69898 1.21933 1.41537 1.22505 0.86335 0.81261 0.77559 0.81470 1.21008 1.21541 1.21092 1.21345 0.86892 0.92530 0.97299 1.22843 0.95592 0.96322 0.94068 1.21602 0.98047 0.99923 0.98499 1.22913 0.93048 0.87387 0.97471 1.21111 1.01029 0.97037 0.97657 1.22917 0.92886 0.90798 0.92021 1.68424 1.11943 1.39239 1.04064 1.24919 0.90457 0.87659 0.97277 1.68421 1.22581 1.10506 1.21943 1.23155 0.89277 1.00326 0.88000 0.91994 0.90740 0.91336 0.90011 0.92392 0.92155 0.93113 0.92688 0.90751 0.96086 0.93622 0.96434 0.94372 0.91883 0.92879 0.92628 0.90631 0.91704 0.82144 0.79020 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.77 37.16 0.33 -1.05 16 2 C -0.06 -0.79 2.26 -92.93 -0.21 -1.00 16 3 H 0.11 1.46 7.76 -51.93 -0.40 1.05 16 4 C 0.55 9.58 7.15 -10.99 -0.08 9.51 16 5 O -0.54 -11.69 15.40 5.55 0.09 -11.60 16 6 N -0.60 -9.70 3.31 -167.82 -0.56 -10.25 16 7 C 0.13 2.12 6.05 -2.47 -0.01 2.10 16 8 C -0.10 -1.65 1.06 -152.33 -0.16 -1.81 16 9 C -0.12 -1.66 7.50 37.16 0.28 -1.38 16 10 C 0.18 4.15 4.70 -3.26 -0.02 4.14 16 11 N -0.59 -14.08 3.38 -171.00 -0.58 -14.66 16 12 C -0.23 -6.19 10.28 -15.06 -0.15 -6.35 16 13 H 0.07 1.86 7.85 -52.48 -0.41 1.45 16 14 C 0.00 0.04 5.38 -17.43 -0.09 -0.06 16 15 N -0.91 -26.92 10.87 55.49 0.60 -26.31 16 16 Si 0.90 22.73 29.56 -169.99 -5.03 17.70 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 19 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 20 C 0.15 2.74 6.35 -3.12 -0.02 2.72 16 21 C -0.09 -1.25 1.15 -150.78 -0.17 -1.42 16 22 C -0.12 -1.37 7.65 37.16 0.28 -1.08 16 23 C 0.12 1.48 4.41 -1.06 0.00 1.47 16 24 C -0.16 -2.38 4.40 -104.36 -0.46 -2.84 16 25 C 0.18 2.66 9.26 -17.20 -0.16 2.50 16 26 N -0.52 -7.91 10.44 -14.58 -0.15 -8.07 16 27 C 0.28 4.00 12.29 -92.15 -1.13 2.86 16 28 N -0.52 -7.95 10.44 -14.58 -0.15 -8.10 16 29 C 0.16 2.32 10.96 -17.20 -0.19 2.13 16 30 H 0.06 0.57 7.50 -51.93 -0.39 0.18 16 31 H 0.07 0.63 5.34 -51.93 -0.28 0.35 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.66 7.16 -51.93 -0.37 1.28 16 34 H 0.06 0.82 7.97 -51.93 -0.41 0.40 16 35 H 0.06 0.81 7.10 -51.93 -0.37 0.45 16 36 H 0.05 0.56 7.16 -51.93 -0.37 0.19 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 2.00 6.02 -51.93 -0.31 1.69 16 39 H 0.02 0.53 7.88 -51.93 -0.41 0.12 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.02 0.35 7.93 -51.93 -0.41 -0.07 16 42 H 0.04 0.68 7.48 -51.93 -0.39 0.29 16 43 H 0.06 0.74 7.09 -51.93 -0.37 0.37 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.53 7.16 -51.93 -0.37 0.16 16 46 H 0.08 0.89 5.94 -51.93 -0.31 0.58 16 47 H 0.06 0.66 7.87 -51.93 -0.41 0.26 16 48 H 0.16 2.18 7.65 -52.48 -0.40 1.77 16 49 H 0.19 1.99 8.06 -52.48 -0.42 1.56 16 50 H 0.17 2.11 8.01 -52.49 -0.42 1.69 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -34.47 385.98 -9.57 -44.04 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.63 Total: 1.00 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -1.98 Total: 10.43 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -0.84 Total: -67.39 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.47 -9.57 -44.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982475588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.163 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds