Wall clock time and date at job start Wed Apr 1 2020 02:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.99788 * 2 1 4 4 C 1.54329 * 109.87861 * 238.90552 * 2 1 3 5 5 H 1.09000 * 110.72426 * 336.75354 * 4 2 1 6 6 N 1.46504 * 110.87026 * 99.95526 * 4 2 1 7 7 C 1.36938 * 119.99708 * 200.05659 * 6 4 2 8 8 H 1.07997 * 120.00388 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99988 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99589 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00152 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47211 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47273 * 120.00164 * 11 9 7 14 14 H 1.48499 * 109.46832 * 240.00137 * 11 9 7 15 15 C 1.55155 * 102.94006 * 218.38804 * 4 2 1 16 16 C 1.54912 * 101.58353 * 35.50266 * 15 4 2 17 17 N 1.47014 * 109.88481 * 121.09885 * 2 1 3 18 18 C 1.34778 * 125.64545 * 298.62504 * 17 2 1 19 19 O 1.21590 * 120.00251 * 175.86419 * 18 17 2 20 20 C 1.47544 * 120.00090 * 355.85885 * 18 17 2 21 21 C 1.40347 * 120.47596 * 175.97903 * 20 18 17 22 22 C 1.36850 * 118.49428 * 179.97438 * 21 20 18 23 23 C 1.39393 * 119.38087 * 0.02562 * 22 21 20 24 24 N 1.38455 * 119.54654 * 179.97438 * 23 22 21 25 25 C 1.48535 * 110.99791 * 62.60056 * 24 23 22 26 26 C 1.54931 * 103.22774 * 159.72415 * 25 24 23 27 27 C 1.54597 * 102.92412 * 322.58714 * 26 25 24 28 28 C 1.47900 * 111.00638 * 179.97438 * 24 23 22 29 29 N 1.32610 * 120.91996 * 359.97438 * 23 22 21 30 30 C 1.31677 * 121.63458 * 359.72606 * 29 23 22 31 31 H 1.09000 * 109.47585 * 281.35364 * 1 2 3 32 32 H 1.09006 * 109.47495 * 41.34964 * 1 2 3 33 33 H 1.09000 * 109.47598 * 161.34958 * 1 2 3 34 34 H 0.96995 * 119.99865 * 20.06641 * 6 4 2 35 35 H 0.96996 * 119.99841 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00820 * 277.43048 * 15 4 2 37 37 H 1.08995 * 111.00662 * 153.57885 * 15 4 2 38 38 H 1.08997 * 110.36816 * 204.15071 * 16 15 4 39 39 H 1.08998 * 110.45686 * 81.87407 * 16 15 4 40 40 H 1.08000 * 120.75208 * 0.02562 * 21 20 18 41 41 H 1.08000 * 120.31240 * 180.02562 * 22 21 20 42 42 H 1.09004 * 110.67042 * 278.16220 * 25 24 23 43 43 H 1.09004 * 110.66594 * 41.29104 * 25 24 23 44 44 H 1.09000 * 110.72707 * 204.22991 * 26 25 24 45 45 H 1.08997 * 110.72542 * 80.94870 * 26 25 24 46 46 H 1.08998 * 110.30846 * 263.04012 * 27 26 25 47 47 H 1.09002 * 110.30860 * 140.87372 * 27 26 25 48 48 H 1.09000 * 109.91447 * 333.51250 * 28 24 23 49 49 H 1.08999 * 109.91488 * 94.80421 * 28 24 23 50 50 H 1.08001 * 119.73962 * 180.27165 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0547 -0.7495 -1.2428 5 1 1.3050 -1.4459 -1.6184 6 7 2.4548 0.1931 -2.2905 7 6 2.5544 -0.2289 -3.5895 8 1 2.3377 -1.2564 -3.8416 9 6 2.9339 0.6641 -4.5822 10 7 3.1985 1.9163 -4.2748 11 14 3.0692 0.0888 -6.3541 12 1 2.7221 -1.3528 -6.4343 13 1 2.1340 0.8714 -7.2015 14 1 4.4596 0.2901 -6.8351 15 6 3.2875 -1.5142 -0.6925 16 6 2.8145 -1.8794 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8037 -0.3646 2.4656 19 8 2.2050 -1.0728 3.3689 20 6 1.0692 0.8776 2.7730 21 6 0.7546 1.2087 4.1000 22 6 0.0726 2.3709 4.3388 23 6 -0.2874 3.1853 3.2664 24 7 -0.9780 4.3616 3.5040 25 6 -0.1673 5.2983 4.3236 26 6 -0.8241 6.6734 4.0440 27 6 -1.1933 6.5820 2.5455 28 6 -1.2615 5.0746 2.2396 29 7 0.0221 2.8491 2.0215 30 6 0.6824 1.7429 1.7487 31 1 -0.3634 0.2023 1.0075 32 1 -0.3634 0.7715 -0.6790 33 1 -0.3634 -0.9737 -0.3286 34 1 2.6491 1.1160 -2.0641 35 1 3.4641 2.5402 -4.9683 36 1 4.1653 -0.8689 -0.6605 37 1 3.4851 -2.4110 -1.2797 38 1 3.6716 -2.0339 1.3921 39 1 2.1891 -2.7719 0.7146 40 1 1.0449 0.5615 4.9144 41 1 -0.1842 2.6545 5.3488 42 1 -0.2396 5.0454 5.3814 43 1 0.8724 5.2950 3.9963 44 1 -0.1145 7.4823 4.2177 45 1 -1.7177 6.8053 4.6541 46 1 -0.4241 7.0570 1.9367 47 1 -2.1616 7.0491 2.3653 48 1 -0.5140 4.8135 1.4904 49 1 -2.2572 4.8135 1.8813 50 1 0.9223 1.5012 0.7238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987183350.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:43 Heat of formation + Delta-G solvation = 73.315898 kcal Electronic energy + Delta-G solvation = -30755.828454 eV Core-core repulsion = 26785.191031 eV Total energy + Delta-G solvation = -3970.637423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34601 -40.07842 -38.25006 -37.57819 -34.28128 -33.42538 -32.76911 -31.61841 -31.50148 -29.48590 -29.17912 -28.69442 -25.50038 -24.38951 -23.77185 -23.22195 -22.53499 -21.37335 -20.87919 -20.37766 -19.51158 -17.76979 -17.68607 -17.24074 -16.52968 -16.12658 -15.78782 -15.30618 -15.21826 -14.83191 -14.46047 -14.22463 -13.90442 -13.70608 -13.50682 -13.49150 -13.20363 -13.09677 -12.81892 -12.59011 -12.47402 -12.35220 -12.20257 -11.75984 -11.66612 -11.58562 -11.43809 -11.24478 -11.12115 -10.89638 -10.85598 -10.69826 -10.40703 -10.19667 -10.11637 -10.00300 -9.85414 -9.72825 -9.38830 -9.01437 -8.57250 -8.26600 -7.11207 -5.88248 -3.19147 0.58405 1.18982 2.83077 3.03945 3.36713 3.37360 3.43703 3.45566 3.80554 4.12963 4.31482 4.43479 4.50395 4.57132 4.64665 4.79324 4.87163 4.89570 4.97203 5.02582 5.06247 5.15460 5.21222 5.36508 5.39396 5.41761 5.49787 5.51625 5.53306 5.59276 5.64415 5.67043 5.74769 5.78985 5.82914 5.87558 5.96939 6.02293 6.09676 6.18651 6.21014 6.27898 6.33130 6.36503 6.45593 6.56198 6.83459 6.91095 7.60320 7.63240 7.78979 8.22929 8.28501 9.40649 9.92456 10.27216 11.33800 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.003144 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.691416 B = 8903.068660 C =11171.209889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 H 0.092 0.908 4 C 0.180 3.820 5 H 0.069 0.931 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.008 4.008 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.156 4.156 16 C 0.108 3.892 17 N -0.603 5.603 18 C 0.582 3.418 19 O -0.549 6.549 20 C -0.219 4.219 21 C 0.002 3.998 22 C -0.196 4.196 23 C 0.322 3.678 24 N -0.464 5.464 25 C 0.044 3.956 26 C -0.123 4.123 27 C -0.134 4.134 28 C 0.032 3.968 29 N -0.520 5.520 30 C 0.132 3.868 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 5.152 17.345 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.001 4.001 3 H 0.109 0.891 4 C 0.068 3.932 5 H 0.087 0.913 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.205 4.205 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.197 4.197 16 C -0.015 4.015 17 N -0.335 5.335 18 C 0.371 3.629 19 O -0.428 6.428 20 C -0.225 4.225 21 C -0.024 4.024 22 C -0.219 4.219 23 C 0.090 3.910 24 N -0.182 5.182 25 C -0.082 4.082 26 C -0.162 4.162 27 C -0.172 4.172 28 C -0.094 4.094 29 N -0.234 5.234 30 C -0.025 4.025 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.106 0.894 49 H 0.101 0.899 50 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.328 5.187 17.309 19.896 hybrid contribution 0.955 -0.368 -0.592 1.182 sum -7.373 4.819 16.717 18.895 Atomic orbital electron populations 1.22634 0.94347 1.03888 1.02235 1.22375 0.94429 0.96899 0.86442 0.89076 1.21274 0.93901 0.91527 0.86505 0.91279 1.42333 1.81062 1.09035 1.03123 1.19223 1.39397 0.95247 0.83637 0.90857 1.24759 1.01909 0.95639 0.98184 1.69665 1.52386 1.03089 1.32485 0.86113 0.77304 0.77759 0.84947 1.20472 1.21776 1.21823 1.23600 1.01156 1.01898 0.93076 1.22297 0.94965 0.87774 0.96422 1.48405 1.51837 1.28758 1.04515 1.17542 0.79327 0.84690 0.81299 1.90746 1.53191 1.53955 1.44947 1.20796 1.07522 0.98837 0.95362 1.21257 0.90860 0.94343 0.95981 1.21193 1.04552 0.96324 0.99810 1.20246 0.88304 0.93036 0.89414 1.61737 1.36786 1.02994 1.16658 1.23331 0.95515 0.90997 0.98329 1.22515 1.01064 0.95888 0.96684 1.22459 1.02517 0.96017 0.96196 1.22940 1.03687 0.91842 0.90976 1.67851 1.15768 1.18963 1.20831 1.25105 0.88366 0.86812 1.02260 0.92134 0.90053 0.91440 0.78044 0.93379 0.90519 0.90255 0.90896 0.91632 0.83664 0.84312 0.89168 0.92454 0.90410 0.90401 0.90961 0.90693 0.89383 0.89901 0.77942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 7.82 37.16 0.29 -2.14 16 2 C 0.10 1.59 2.45 -66.96 -0.16 1.42 16 3 H 0.09 1.48 5.59 -51.93 -0.29 1.19 16 4 C 0.18 3.19 3.11 -66.09 -0.21 2.98 16 5 H 0.07 1.23 7.53 -51.93 -0.39 0.83 16 6 N -0.71 -16.18 5.25 -51.65 -0.27 -16.45 16 7 C -0.24 -6.25 9.98 -15.06 -0.15 -6.40 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 11 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 C -0.16 -2.53 6.77 -24.58 -0.17 -2.69 16 16 C 0.11 1.59 6.89 -2.53 -0.02 1.58 16 17 N -0.60 -9.38 3.07 -166.54 -0.51 -9.89 16 18 C 0.58 9.54 7.54 -12.47 -0.09 9.45 16 19 O -0.55 -10.24 16.71 5.29 0.09 -10.15 16 20 C -0.22 -3.21 5.30 -104.82 -0.56 -3.76 16 21 C 0.00 0.02 9.65 -39.29 -0.38 -0.36 16 22 C -0.20 -2.25 9.38 -39.65 -0.37 -2.62 16 23 C 0.32 4.11 6.20 -155.28 -0.96 3.15 16 24 N -0.46 -5.08 5.28 -169.29 -0.89 -5.98 16 25 C 0.04 0.37 6.03 -1.90 -0.01 0.36 16 26 C -0.12 -0.85 7.06 -24.87 -0.18 -1.02 16 27 C -0.13 -1.06 6.93 -25.39 -0.18 -1.24 16 28 C 0.03 0.34 6.34 -2.77 -0.02 0.32 16 29 N -0.52 -7.46 8.10 -12.14 -0.10 -7.56 16 30 C 0.13 1.91 7.75 -17.13 -0.13 1.78 16 31 H 0.06 0.84 4.91 -51.93 -0.26 0.58 16 32 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 33 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 34 H 0.39 9.33 7.52 -40.82 -0.31 9.02 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.15 1.70 7.73 -52.49 -0.41 1.29 16 41 H 0.14 1.23 8.01 -52.49 -0.42 0.81 16 42 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 43 H 0.06 0.52 7.99 -51.93 -0.42 0.11 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 1.10 6.48 -51.93 -0.34 0.77 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.21 2.99 2.09 -55.61 -0.12 2.88 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -30.38 388.15 -11.05 -41.43 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -7.53 Total: 11.77 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.39 Total: 0.47 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -1.05 Total: -65.69 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.38 -11.05 -41.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987183350.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.747 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds