Wall clock time and date at job start Wed Apr 1 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.99738 * 2 1 4 4 C 1.54318 * 109.88417 * 121.10080 * 2 1 3 5 5 H 1.09000 * 110.72094 * 259.97385 * 4 2 1 6 6 N 1.46501 * 110.71905 * 23.24556 * 4 2 1 7 7 C 1.36940 * 120.00008 * 205.00260 * 6 4 2 8 8 H 1.08004 * 119.99537 * 359.97438 * 7 6 4 9 9 C 1.38805 * 120.00051 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00445 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99840 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47172 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47133 * 119.99813 * 11 9 7 14 14 H 1.48504 * 109.47031 * 239.99689 * 11 9 7 15 15 C 1.55151 * 102.94445 * 141.60882 * 4 2 1 16 16 C 1.55132 * 101.48671 * 324.32972 * 15 4 2 17 17 N 1.47031 * 109.87940 * 238.91037 * 2 1 3 18 18 C 1.34771 * 125.65077 * 61.60528 * 17 2 1 19 19 O 1.21592 * 119.99698 * 183.28030 * 18 17 2 20 20 C 1.47543 * 120.00158 * 3.27623 * 18 17 2 21 21 C 1.40346 * 120.47420 * 184.78770 * 20 18 17 22 22 C 1.36859 * 118.49059 * 180.02562 * 21 20 18 23 23 C 1.39401 * 119.37793 * 0.02562 * 22 21 20 24 24 N 1.38459 * 119.53404 * 179.97438 * 23 22 21 25 25 C 1.47903 * 110.99756 * 180.02562 * 24 23 22 26 26 C 1.53990 * 107.05877 * 214.15637 * 25 24 23 27 27 C 1.54594 * 105.14150 * 1.22453 * 26 25 24 28 28 C 1.48532 * 111.00204 * 62.60771 * 24 23 22 29 29 N 1.32600 * 120.92194 * 0.25806 * 23 22 21 30 30 C 1.31677 * 121.63904 * 359.47000 * 29 23 22 31 31 H 1.09000 * 109.47112 * 191.55735 * 1 2 3 32 32 H 1.08996 * 109.46770 * 311.56411 * 1 2 3 33 33 H 1.09000 * 109.47327 * 71.56136 * 1 2 3 34 34 H 0.96994 * 120.00199 * 24.99651 * 6 4 2 35 35 H 0.96994 * 120.00404 * 180.02562 * 10 9 7 36 36 H 1.09004 * 111.00616 * 82.56981 * 15 4 2 37 37 H 1.09002 * 111.00436 * 206.38581 * 15 4 2 38 38 H 1.08995 * 110.50135 * 278.45409 * 16 15 4 39 39 H 1.09003 * 110.34169 * 156.05764 * 16 15 4 40 40 H 1.07997 * 120.75396 * 0.02562 * 21 20 18 41 41 H 1.08003 * 120.30835 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.91764 * 94.80177 * 25 24 23 43 43 H 1.09004 * 109.91487 * 333.51260 * 25 24 23 44 44 H 1.09007 * 110.31076 * 120.13970 * 26 25 24 45 45 H 1.08999 * 110.30752 * 242.30643 * 26 25 24 46 46 H 1.09001 * 110.72231 * 140.31091 * 27 26 25 47 47 H 1.08999 * 110.72603 * 263.59725 * 27 26 25 48 48 H 1.09000 * 110.66666 * 41.28053 * 28 24 23 49 49 H 1.09004 * 110.66686 * 278.15339 * 28 24 23 50 50 H 1.07990 * 119.74357 * 180.26777 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 1.2426 5 1 2.3530 -0.0461 2.0200 6 7 1.0472 -1.6856 1.7472 7 6 1.0607 -2.0619 3.0639 8 1 1.8145 -1.6689 3.7301 9 6 0.1063 -2.9492 3.5419 10 7 -0.8120 -3.4285 2.7299 11 14 0.1243 -3.4619 5.3381 12 1 1.2487 -2.7868 6.0344 13 1 -1.1588 -3.0732 5.9767 14 1 0.2975 -4.9339 5.4310 15 6 3.2876 -1.5143 0.6922 16 6 2.8099 -1.8825 -0.7370 17 7 2.0300 -0.7140 -1.1841 18 6 1.8074 -0.3619 -2.4658 19 8 2.2216 -1.0622 -3.3694 20 6 1.0609 0.8733 -2.7726 21 6 0.7365 1.1981 -4.0988 22 6 0.0436 2.3540 -4.3371 23 6 -0.3165 3.1688 -3.2649 24 7 -1.0171 4.3392 -3.5023 25 6 -1.2988 5.0539 -2.2384 26 6 -2.6689 5.7376 -2.4018 27 6 -3.1526 5.3400 -3.8153 28 6 -2.3418 4.0528 -4.1100 29 7 0.0074 2.8415 -2.0214 30 6 0.6688 1.7361 -1.7481 31 1 -0.3633 -1.0068 0.2059 32 1 -0.3633 0.6818 0.7689 33 1 -0.3634 0.3250 -0.9749 34 1 0.3705 -2.0388 1.1489 35 1 -1.4792 -4.0482 3.0641 36 1 4.1655 -0.8689 0.6602 37 1 3.4856 -2.4108 1.2798 38 1 2.1801 -2.7718 -0.7117 39 1 3.6655 -2.0412 -1.3934 40 1 1.0271 0.5505 -4.9128 41 1 -0.2217 2.6322 -5.3464 42 1 -0.5290 5.8038 -2.0563 43 1 -1.3337 4.3452 -1.4110 44 1 -3.3660 5.3733 -1.6470 45 1 -2.5627 6.8199 -2.3288 46 1 -4.2222 5.1299 -3.8120 47 1 -2.9138 6.1199 -4.5383 48 1 -2.8050 3.1889 -3.6333 49 1 -2.2463 3.8954 -5.1844 50 1 0.9130 1.4973 -0.7237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987183357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:50 Heat of formation + Delta-G solvation = 83.661318 kcal Electronic energy + Delta-G solvation = -30915.547637 eV Core-core repulsion = 26945.358825 eV Total energy + Delta-G solvation = -3970.188812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34432 -40.06836 -38.27620 -37.57091 -34.15628 -33.40684 -32.76115 -31.58817 -31.44612 -29.33513 -29.06783 -28.68839 -25.59681 -24.31594 -23.92675 -23.49294 -22.48029 -21.38206 -20.83863 -19.97165 -19.34017 -18.08971 -17.56097 -17.12434 -16.65128 -16.11123 -15.72148 -15.24553 -15.13936 -14.88671 -14.48247 -14.06802 -13.94256 -13.87183 -13.55076 -13.34248 -13.10634 -13.08388 -12.92913 -12.53501 -12.48520 -12.28541 -12.15447 -11.69831 -11.57172 -11.45488 -11.27611 -11.10562 -11.04991 -10.87923 -10.81463 -10.69525 -10.51379 -10.19067 -10.08729 -9.93664 -9.75434 -9.67967 -9.35690 -9.02411 -8.46113 -8.26220 -7.10800 -5.88365 -3.18714 0.60725 1.19781 2.87588 3.13864 3.36938 3.39556 3.43186 3.45314 3.81334 4.10872 4.28556 4.46866 4.50769 4.57387 4.62409 4.80647 4.90102 4.94969 4.97762 4.99605 5.12090 5.14397 5.23161 5.35499 5.42441 5.47595 5.50225 5.53032 5.55789 5.60477 5.64503 5.69141 5.75604 5.77304 5.88538 5.95030 5.99263 6.05472 6.15989 6.23698 6.28113 6.32178 6.39847 6.51935 6.61349 6.71030 6.85172 6.90465 7.61356 7.73003 7.77840 8.29288 8.32087 9.41303 9.94304 10.28736 11.33676 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.002930 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.807976 B = 9552.941718 C =11114.049772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 H 0.085 0.915 4 C 0.175 3.825 5 H 0.075 0.925 6 N -0.713 5.713 7 C -0.246 4.246 8 H 0.074 0.926 9 C -0.008 4.008 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.160 4.160 16 C 0.114 3.886 17 N -0.601 5.601 18 C 0.580 3.420 19 O -0.549 6.549 20 C -0.216 4.216 21 C 0.002 3.998 22 C -0.196 4.196 23 C 0.321 3.679 24 N -0.464 5.464 25 C 0.033 3.967 26 C -0.134 4.134 27 C -0.124 4.124 28 C 0.043 3.957 29 N -0.525 5.525 30 C 0.132 3.868 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.388 0.612 35 H 0.256 0.744 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.004 16.694 -12.792 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.003 4.003 3 H 0.103 0.897 4 C 0.063 3.937 5 H 0.093 0.907 6 N -0.356 5.356 7 C -0.376 4.376 8 H 0.092 0.908 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.202 4.202 16 C -0.007 4.007 17 N -0.333 5.333 18 C 0.369 3.631 19 O -0.429 6.429 20 C -0.222 4.222 21 C -0.024 4.024 22 C -0.219 4.219 23 C 0.089 3.911 24 N -0.182 5.182 25 C -0.093 4.093 26 C -0.172 4.172 27 C -0.162 4.162 28 C -0.082 4.082 29 N -0.239 5.239 30 C -0.025 4.025 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.755 17.212 -12.830 21.481 hybrid contribution -0.375 -1.450 0.497 1.578 sum -1.130 15.762 -12.333 20.046 Atomic orbital electron populations 1.22638 0.93923 1.05507 1.01270 1.22487 0.95345 0.95746 0.86735 0.89749 1.21156 0.89193 0.91801 0.91544 0.90744 1.42644 1.32512 1.51427 1.09009 1.19272 1.10923 1.21438 0.86011 0.90848 1.24753 0.97879 0.99905 0.97967 1.69660 1.18386 1.35428 1.34209 0.86121 0.77272 0.78078 0.84678 1.20476 1.21846 1.21873 1.23596 0.99024 1.02492 0.95041 1.22257 0.94862 0.88161 0.95466 1.48484 1.51882 1.28515 1.04466 1.17534 0.79572 0.84573 0.81430 1.90749 1.52997 1.54151 1.44979 1.20812 1.07209 0.98775 0.95371 1.21271 0.90644 0.94441 0.96078 1.21190 1.04678 0.96298 0.99691 1.20213 0.93271 0.88482 0.89168 1.61740 1.17178 1.15380 1.23871 1.22929 0.96893 0.98264 0.91261 1.22464 0.96395 1.01197 0.97136 1.22519 0.99510 0.96846 0.97289 1.23340 0.86191 0.98149 1.00530 1.67814 1.16775 1.18873 1.20397 1.25019 0.88581 0.86712 1.02166 0.89398 0.90540 0.92651 0.77418 0.93395 0.91875 0.89189 0.90974 0.91266 0.83657 0.84344 0.89994 0.89520 0.91011 0.90735 0.90393 0.90400 0.92419 0.89136 0.77991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 7.53 37.16 0.28 -2.55 16 2 C 0.10 1.54 2.67 -66.95 -0.18 1.36 16 3 H 0.09 1.11 6.06 -51.93 -0.31 0.80 16 4 C 0.18 3.06 3.48 -66.10 -0.23 2.83 16 5 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 6 N -0.71 -15.92 4.53 -51.66 -0.23 -16.16 16 7 C -0.25 -6.22 9.96 -15.06 -0.15 -6.37 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 11 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 C -0.16 -2.56 6.78 -24.47 -0.17 -2.72 16 16 C 0.11 1.90 6.88 -2.41 -0.02 1.88 16 17 N -0.60 -9.84 3.06 -166.40 -0.51 -10.35 16 18 C 0.58 9.94 7.61 -12.47 -0.09 9.84 16 19 O -0.55 -10.83 16.70 5.28 0.09 -10.74 16 20 C -0.22 -3.20 5.37 -104.82 -0.56 -3.77 16 21 C 0.00 0.03 9.65 -39.29 -0.38 -0.35 16 22 C -0.20 -2.27 9.38 -39.65 -0.37 -2.64 16 23 C 0.32 4.01 6.20 -155.28 -0.96 3.04 16 24 N -0.46 -4.91 5.28 -169.26 -0.89 -5.81 16 25 C 0.03 0.33 6.34 -2.76 -0.02 0.31 16 26 C -0.13 -0.98 6.93 -25.38 -0.18 -1.16 16 27 C -0.12 -0.81 7.06 -24.86 -0.18 -0.99 16 28 C 0.04 0.36 6.03 -1.89 -0.01 0.35 16 29 N -0.52 -7.18 8.11 -12.14 -0.10 -7.28 16 30 C 0.13 1.85 7.59 -17.12 -0.13 1.72 16 31 H 0.09 1.71 5.56 -51.93 -0.29 1.42 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.86 4.59 -51.93 -0.24 0.62 16 34 H 0.39 9.40 5.48 -40.82 -0.22 9.18 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 40 H 0.15 1.78 7.73 -52.49 -0.41 1.37 16 41 H 0.14 1.25 8.01 -52.48 -0.42 0.83 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.00 6.48 -51.93 -0.34 0.66 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.53 7.99 -51.93 -0.42 0.11 16 49 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 50 H 0.20 2.74 2.11 -55.63 -0.12 2.62 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -30.38 384.28 -10.97 -41.35 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -7.37 Total: 12.31 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -3.44 Total: 0.46 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -1.01 Total: -65.46 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.38 -10.97 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987183357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.007 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds