Wall clock time and date at job start Wed Apr 1 2020 02:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.99738 * 2 1 4 4 C 1.54318 * 109.88417 * 121.10080 * 2 1 3 5 5 H 1.09000 * 110.72094 * 259.97385 * 4 2 1 6 6 N 1.46501 * 110.71905 * 23.24556 * 4 2 1 7 7 C 1.36940 * 120.00008 * 205.00260 * 6 4 2 8 8 H 1.08004 * 119.99537 * 359.97438 * 7 6 4 9 9 C 1.38805 * 120.00051 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00445 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99840 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47172 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47133 * 119.99813 * 11 9 7 14 14 H 1.48504 * 109.47031 * 239.99689 * 11 9 7 15 15 C 1.55151 * 102.94445 * 141.60882 * 4 2 1 16 16 C 1.55132 * 101.48671 * 324.32972 * 15 4 2 17 17 N 1.47031 * 109.87940 * 238.91037 * 2 1 3 18 18 C 1.34771 * 125.65077 * 61.60528 * 17 2 1 19 19 O 1.21592 * 119.99698 * 183.28030 * 18 17 2 20 20 C 1.47543 * 120.00158 * 3.27623 * 18 17 2 21 21 C 1.40346 * 120.47420 * 184.78770 * 20 18 17 22 22 C 1.36859 * 118.49059 * 180.02562 * 21 20 18 23 23 C 1.39401 * 119.37793 * 0.02562 * 22 21 20 24 24 N 1.38459 * 119.53404 * 179.97438 * 23 22 21 25 25 C 1.47903 * 110.99756 * 180.02562 * 24 23 22 26 26 C 1.53990 * 107.05877 * 214.15637 * 25 24 23 27 27 C 1.54594 * 105.14150 * 1.22453 * 26 25 24 28 28 C 1.48532 * 111.00204 * 62.60771 * 24 23 22 29 29 N 1.32600 * 120.92194 * 0.25806 * 23 22 21 30 30 C 1.31677 * 121.63904 * 359.47000 * 29 23 22 31 31 H 1.09000 * 109.47112 * 191.55735 * 1 2 3 32 32 H 1.08996 * 109.46770 * 311.56411 * 1 2 3 33 33 H 1.09000 * 109.47327 * 71.56136 * 1 2 3 34 34 H 0.96994 * 120.00199 * 24.99651 * 6 4 2 35 35 H 0.96994 * 120.00404 * 180.02562 * 10 9 7 36 36 H 1.09004 * 111.00616 * 82.56981 * 15 4 2 37 37 H 1.09002 * 111.00436 * 206.38581 * 15 4 2 38 38 H 1.08995 * 110.50135 * 278.45409 * 16 15 4 39 39 H 1.09003 * 110.34169 * 156.05764 * 16 15 4 40 40 H 1.07997 * 120.75396 * 0.02562 * 21 20 18 41 41 H 1.08003 * 120.30835 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.91764 * 94.80177 * 25 24 23 43 43 H 1.09004 * 109.91487 * 333.51260 * 25 24 23 44 44 H 1.09007 * 110.31076 * 120.13970 * 26 25 24 45 45 H 1.08999 * 110.30752 * 242.30643 * 26 25 24 46 46 H 1.09001 * 110.72231 * 140.31091 * 27 26 25 47 47 H 1.08999 * 110.72603 * 263.59725 * 27 26 25 48 48 H 1.09000 * 110.66666 * 41.28053 * 28 24 23 49 49 H 1.09004 * 110.66686 * 278.15339 * 28 24 23 50 50 H 1.07990 * 119.74357 * 180.26777 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 1.2426 5 1 2.3530 -0.0461 2.0200 6 7 1.0472 -1.6856 1.7472 7 6 1.0607 -2.0619 3.0639 8 1 1.8145 -1.6689 3.7301 9 6 0.1063 -2.9492 3.5419 10 7 -0.8120 -3.4285 2.7299 11 14 0.1243 -3.4619 5.3381 12 1 1.2487 -2.7868 6.0344 13 1 -1.1588 -3.0732 5.9767 14 1 0.2975 -4.9339 5.4310 15 6 3.2876 -1.5143 0.6922 16 6 2.8099 -1.8825 -0.7370 17 7 2.0300 -0.7140 -1.1841 18 6 1.8074 -0.3619 -2.4658 19 8 2.2216 -1.0622 -3.3694 20 6 1.0609 0.8733 -2.7726 21 6 0.7365 1.1981 -4.0988 22 6 0.0436 2.3540 -4.3371 23 6 -0.3165 3.1688 -3.2649 24 7 -1.0171 4.3392 -3.5023 25 6 -1.2988 5.0539 -2.2384 26 6 -2.6689 5.7376 -2.4018 27 6 -3.1526 5.3400 -3.8153 28 6 -2.3418 4.0528 -4.1100 29 7 0.0074 2.8415 -2.0214 30 6 0.6688 1.7361 -1.7481 31 1 -0.3633 -1.0068 0.2059 32 1 -0.3633 0.6818 0.7689 33 1 -0.3634 0.3250 -0.9749 34 1 0.3705 -2.0388 1.1489 35 1 -1.4792 -4.0482 3.0641 36 1 4.1655 -0.8689 0.6602 37 1 3.4856 -2.4108 1.2798 38 1 2.1801 -2.7718 -0.7117 39 1 3.6655 -2.0412 -1.3934 40 1 1.0271 0.5505 -4.9128 41 1 -0.2217 2.6322 -5.3464 42 1 -0.5290 5.8038 -2.0563 43 1 -1.3337 4.3452 -1.4110 44 1 -3.3660 5.3733 -1.6470 45 1 -2.5627 6.8199 -2.3288 46 1 -4.2222 5.1299 -3.8120 47 1 -2.9138 6.1199 -4.5383 48 1 -2.8050 3.1889 -3.6333 49 1 -2.2463 3.8954 -5.1844 50 1 0.9130 1.4973 -0.7237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987183357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:49 Heat of formation + Delta-G solvation = 65.425530 kcal Electronic energy + Delta-G solvation = -30916.338400 eV Core-core repulsion = 26945.358825 eV Total energy + Delta-G solvation = -3970.979576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.44284 -41.17329 -39.29145 -38.87419 -35.84091 -34.46851 -33.79234 -33.21831 -32.59180 -30.68760 -29.96293 -29.79089 -27.04413 -25.60522 -25.35923 -24.68403 -23.58954 -22.19312 -21.61484 -21.37060 -20.59175 -19.58791 -18.60316 -18.53462 -17.79338 -17.12703 -16.86665 -16.48211 -16.40238 -16.30774 -15.73561 -15.36006 -15.23244 -14.84994 -14.77819 -14.54080 -14.48397 -14.07096 -14.00578 -13.82792 -13.57590 -13.32581 -13.09266 -13.02931 -12.95638 -12.73626 -12.52103 -12.31618 -12.29971 -12.24566 -12.11751 -11.99280 -11.79302 -11.50135 -11.45520 -11.25727 -11.08174 -10.93062 -10.79661 -10.42008 -9.78314 -9.24476 -8.99074 -7.91038 -5.19136 -0.45825 0.19426 1.50625 1.52147 1.60829 1.67010 1.85862 2.48684 2.58526 2.75418 3.19817 3.32354 3.43230 3.57691 3.63164 3.75036 3.80762 3.84017 3.89434 3.97938 4.01648 4.14215 4.15221 4.23602 4.28333 4.32637 4.47726 4.52288 4.57898 4.64148 4.68606 4.74943 4.81993 4.87199 4.90483 4.94381 4.97978 5.01588 5.07612 5.14312 5.17603 5.25022 5.27974 5.32383 5.34777 5.42308 5.56607 5.59955 5.99982 6.30197 6.41381 6.76128 6.99181 7.38118 8.10746 8.33318 9.32300 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.002930 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.807976 B = 9552.941718 C =11114.049772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 H 0.118 0.882 4 C 0.166 3.834 5 H 0.091 0.909 6 N -0.724 5.724 7 C -0.230 4.230 8 H 0.084 0.916 9 C -0.074 4.074 10 N -0.970 5.970 11 Si 0.967 3.033 12 H -0.262 1.262 13 H -0.299 1.299 14 H -0.302 1.302 15 C -0.146 4.146 16 C 0.114 3.886 17 N -0.601 5.601 18 C 0.577 3.423 19 O -0.582 6.582 20 C -0.235 4.235 21 C -0.001 4.001 22 C -0.187 4.187 23 C 0.318 3.682 24 N -0.466 5.466 25 C 0.030 3.970 26 C -0.130 4.130 27 C -0.117 4.117 28 C 0.039 3.961 29 N -0.536 5.536 30 C 0.134 3.866 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.376 0.624 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.108 0.892 50 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 19.439 -13.411 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.007 3.993 3 H 0.135 0.865 4 C 0.056 3.944 5 H 0.109 0.891 6 N -0.366 5.366 7 C -0.362 4.362 8 H 0.102 0.898 9 C -0.266 4.266 10 N -0.621 5.621 11 Si 0.797 3.203 12 H -0.187 1.187 13 H -0.226 1.226 14 H -0.229 1.229 15 C -0.186 4.186 16 C -0.008 4.008 17 N -0.333 5.333 18 C 0.368 3.632 19 O -0.464 6.464 20 C -0.241 4.241 21 C -0.027 4.027 22 C -0.209 4.209 23 C 0.086 3.914 24 N -0.183 5.183 25 C -0.097 4.097 26 C -0.169 4.169 27 C -0.155 4.155 28 C -0.086 4.086 29 N -0.251 5.251 30 C -0.023 4.023 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.212 0.788 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.169 0.831 41 H 0.185 0.815 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.066 0.934 49 H 0.126 0.874 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.349 20.013 -13.440 24.110 hybrid contribution -0.473 -2.162 0.587 2.289 sum -0.822 17.852 -12.853 22.013 Atomic orbital electron populations 1.22504 0.94624 1.03276 1.01788 1.22470 0.94658 0.96819 0.85347 0.86466 1.21439 0.88686 0.91489 0.92822 0.89087 1.42808 1.33460 1.52250 1.08048 1.19679 1.09710 1.19561 0.87264 0.89771 1.25466 0.98489 1.01259 1.01380 1.69818 1.19600 1.36903 1.35742 0.85161 0.77221 0.76998 0.80885 1.18659 1.22635 1.22939 1.23457 0.99301 1.02132 0.93743 1.22187 0.94674 0.87563 0.96341 1.48522 1.51683 1.28328 1.04722 1.17909 0.79179 0.84989 0.81076 1.90720 1.54491 1.55408 1.45800 1.20706 1.08563 0.98289 0.96536 1.21414 0.90664 0.95075 0.95550 1.21437 1.03436 0.95230 1.00843 1.20573 0.92916 0.88932 0.89016 1.61795 1.18165 1.14317 1.24059 1.22955 0.98452 0.97865 0.90418 1.22461 0.94815 1.01758 0.97829 1.22541 1.00073 0.96092 0.96784 1.23498 0.85068 0.98751 1.01260 1.67859 1.17105 1.18789 1.21301 1.24911 0.88647 0.86809 1.01917 0.93019 0.89967 0.91999 0.78790 0.94341 0.88611 0.90665 0.93698 0.90452 0.83133 0.81489 0.90202 0.91381 0.90925 0.89401 0.88904 0.89346 0.93442 0.87386 0.77971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 7.53 71.98 0.54 -4.76 16 2 C 0.11 3.26 2.67 45.34 0.12 3.38 16 3 H 0.12 2.80 6.06 -2.39 -0.01 2.79 16 4 C 0.17 5.58 3.48 46.18 0.16 5.74 16 5 H 0.09 2.82 8.09 -2.39 -0.02 2.80 16 6 N -0.72 -32.55 4.53 -317.35 -1.44 -33.99 16 7 C -0.23 -11.62 9.96 84.03 0.84 -10.78 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 9 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 10 N -0.97 -57.27 13.06 21.65 0.28 -56.99 16 11 Si 0.97 44.31 29.55 68.60 2.03 46.34 16 12 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 13 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 15 C -0.15 -4.45 6.78 32.06 0.22 -4.23 16 16 C 0.11 3.81 6.88 86.93 0.60 4.41 16 17 N -0.60 -19.48 3.06 -798.63 -2.45 -21.92 16 18 C 0.58 19.74 7.61 86.70 0.66 20.40 16 19 O -0.58 -23.17 16.70 -4.01 -0.07 -23.24 16 20 C -0.23 -6.81 5.37 -19.99 -0.11 -6.91 16 21 C 0.00 -0.02 9.65 22.46 0.22 0.19 16 22 C -0.19 -3.94 9.38 22.23 0.21 -3.73 16 23 C 0.32 7.38 6.20 133.25 0.83 8.20 16 24 N -0.47 -8.86 5.28 -689.40 -3.64 -12.49 16 25 C 0.03 0.54 6.34 86.44 0.55 1.09 16 26 C -0.13 -1.61 6.93 31.47 0.22 -1.39 16 27 C -0.12 -1.18 7.06 31.81 0.22 -0.96 16 28 C 0.04 0.54 6.03 86.66 0.52 1.06 16 29 N -0.54 -14.02 8.11 -192.33 -1.56 -15.58 16 30 C 0.13 3.61 7.59 85.04 0.65 4.26 16 31 H 0.05 2.08 5.56 -2.39 -0.01 2.07 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 1.92 4.59 -2.39 -0.01 1.91 16 34 H 0.38 18.86 5.48 -92.71 -0.51 18.35 16 35 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 40 H 0.15 3.55 7.73 -2.91 -0.02 3.53 16 41 H 0.17 2.48 8.01 -2.91 -0.02 2.46 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.51 6.48 -2.38 -0.02 1.49 16 44 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.77 7.99 -2.39 -0.02 0.76 16 49 H 0.11 1.13 8.11 -2.39 -0.02 1.11 16 50 H 0.20 5.21 2.11 -5.86 -0.01 5.20 16 Total: -1.00 -66.89 384.28 0.52 -66.37 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.46 Total: 39.07 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 6.91 Total: 12.44 kcal Atomic # 7 Polarization: -132.18 SS G_CDS: -8.80 Total: -140.98 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.07 Total: -23.24 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -66.89 0.52 -66.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987183357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.796 kcal (2) G-P(sol) polarization free energy of solvation -66.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds