Wall clock time and date at job start Wed Apr 1 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.87048 * 2 1 4 4 C 1.54328 * 110.01088 * 121.09528 * 2 1 3 5 5 C 1.55154 * 102.94254 * 141.68314 * 4 2 1 6 6 H 1.09001 * 111.00333 * 82.61069 * 5 4 2 7 7 N 1.46493 * 111.00702 * 206.42657 * 5 4 2 8 8 C 1.36935 * 120.00280 * 204.99941 * 7 5 4 9 9 H 1.07996 * 119.99571 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00053 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00299 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99999 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47350 * 59.99802 * 12 10 8 14 14 H 1.48498 * 109.47313 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46887 * 299.99911 * 12 10 8 16 16 C 1.55138 * 101.48549 * 324.33665 * 5 4 2 17 17 N 1.47023 * 109.88235 * 238.98232 * 2 1 3 18 18 C 1.34769 * 125.64663 * 61.45634 * 17 2 1 19 19 O 1.21518 * 120.00270 * 359.97438 * 18 17 2 20 20 C 1.48192 * 120.00039 * 180.02562 * 18 17 2 21 21 C 1.39025 * 119.69049 * 180.02562 * 20 18 17 22 22 C 1.39449 * 118.95812 * 179.97438 * 21 20 18 23 23 N 1.39192 * 120.83583 * 180.02562 * 22 21 20 24 24 C 1.48528 * 110.99841 * 296.65816 * 23 22 21 25 25 C 1.54937 * 103.22718 * 159.71929 * 24 23 22 26 26 C 1.54593 * 102.92303 * 322.58529 * 25 24 23 27 27 C 1.47907 * 111.00011 * 54.05356 * 23 22 21 28 28 C 1.39421 * 118.33405 * 359.97438 * 22 21 20 29 29 C 1.38233 * 119.26355 * 0.02562 * 28 22 21 30 30 N 1.31643 * 120.99135 * 359.97438 * 29 28 22 31 31 H 1.09002 * 109.47305 * 179.56478 * 1 2 3 32 32 H 1.08998 * 109.47570 * 299.56135 * 1 2 3 33 33 H 1.08997 * 109.47060 * 59.56224 * 1 2 3 34 34 H 1.08997 * 110.71957 * 260.04971 * 4 2 1 35 35 H 1.08997 * 110.71536 * 23.32165 * 4 2 1 36 36 H 0.97007 * 120.00111 * 25.00061 * 7 5 4 37 37 H 0.97003 * 120.00350 * 179.97438 * 11 10 8 38 38 H 1.08999 * 110.49257 * 278.45060 * 16 5 4 39 39 H 1.08996 * 110.34550 * 156.06074 * 16 5 4 40 40 H 1.07998 * 120.52426 * 359.95511 * 21 20 18 41 41 H 1.09008 * 110.66749 * 278.15021 * 24 23 22 42 42 H 1.08997 * 110.67248 * 41.28130 * 24 23 22 43 43 H 1.09003 * 110.72155 * 204.22274 * 25 24 23 44 44 H 1.09002 * 110.72799 * 80.94460 * 25 24 23 45 45 H 1.09002 * 110.30625 * 263.04202 * 26 25 24 46 46 H 1.08998 * 110.31356 * 140.87478 * 26 25 24 47 47 H 1.09009 * 109.91561 * 333.50693 * 27 23 22 48 48 H 1.08994 * 109.92082 * 94.60574 * 27 23 22 49 49 H 1.08006 * 120.36751 * 179.97438 * 28 22 21 50 50 H 1.07998 * 119.50066 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 6 3.2918 -1.5107 0.6895 6 1 4.1683 -0.8636 0.6573 7 7 3.5610 -2.7158 1.4778 8 6 4.8254 -3.2400 1.5171 9 1 5.6243 -2.7647 0.9672 10 6 5.0806 -4.3815 2.2644 11 7 4.1073 -4.9598 2.9357 12 14 6.8056 -5.0962 2.3186 13 1 7.7424 -4.0868 2.8742 14 1 6.8133 -6.3062 3.1794 15 1 7.2323 -5.4641 0.9446 16 6 2.8130 -1.8793 -0.7394 17 7 2.0300 -0.7125 -1.1849 18 6 1.8050 -0.3603 -2.4661 19 8 1.1367 0.6230 -2.7177 20 6 2.3716 -1.1728 -3.5684 21 6 2.1359 -0.8033 -4.8877 22 6 2.6768 -1.5785 -5.9129 23 7 2.4659 -1.2442 -7.2475 24 6 1.0237 -1.3219 -7.5942 25 6 0.9177 -0.4464 -8.8681 26 6 1.9040 0.7079 -8.5775 27 6 2.8699 0.1535 -7.5140 28 6 3.4351 -2.6963 -5.5676 29 6 3.6244 -2.9981 -4.2320 30 7 3.1007 -2.2467 -3.2864 31 1 -0.3634 -1.0276 -0.0078 32 1 -0.3634 0.5070 0.8939 33 1 -0.3633 0.5206 -0.8860 34 1 2.3556 -0.0451 2.0190 35 1 1.3103 -1.4471 1.6178 36 1 2.8435 -3.1424 1.9719 37 1 4.2855 -5.7578 3.4577 38 1 2.1853 -2.7700 -0.7136 39 1 3.6681 -2.0359 -1.3969 40 1 1.5429 0.0702 -5.1152 41 1 0.7346 -2.3507 -7.8092 42 1 0.4123 -0.9091 -6.7918 43 1 -0.0963 -0.0658 -8.9912 44 1 1.2296 -1.0077 -9.7490 45 1 1.3686 1.5737 -8.1876 46 1 2.4502 0.9757 -9.4819 47 1 2.7939 0.7427 -6.6001 48 1 3.8933 0.1793 -7.8882 49 1 3.8691 -3.3201 -6.3352 50 1 4.2115 -3.8629 -3.9601 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989124060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:50 Heat of formation + Delta-G solvation = 39.491105 kcal Electronic energy + Delta-G solvation = -30426.299384 eV Core-core repulsion = 26454.195207 eV Total energy + Delta-G solvation = -3972.104177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.09812 -39.78792 -38.55090 -37.28974 -34.17509 -33.74425 -32.03625 -31.35406 -30.87525 -29.57578 -29.31733 -28.35592 -25.40527 -24.77964 -23.99858 -23.62776 -21.87604 -21.38086 -21.10474 -20.21601 -19.15220 -17.51237 -17.41586 -17.11277 -16.26146 -16.00671 -15.88891 -15.48011 -15.20663 -14.74604 -14.49240 -14.38062 -14.07154 -13.66920 -13.59449 -13.27899 -13.17246 -13.09066 -12.84004 -12.66899 -12.47690 -12.22435 -12.13894 -12.04451 -11.78404 -11.65255 -11.62451 -11.10634 -11.00805 -10.99704 -10.76645 -10.62701 -10.26691 -10.00833 -10.00030 -9.72774 -9.70345 -9.39603 -9.32184 -9.04076 -8.86842 -8.26042 -7.02099 -5.80336 -3.10188 0.60675 0.94109 2.80745 3.10926 3.40416 3.42692 3.47476 3.48155 3.79740 4.14327 4.19335 4.37124 4.51590 4.55109 4.65880 4.75025 4.86630 4.91526 5.04638 5.06989 5.18075 5.20590 5.28819 5.32668 5.37483 5.41089 5.45696 5.53657 5.54171 5.57609 5.60832 5.65899 5.72628 5.81043 5.82333 5.91125 5.92857 6.17416 6.23085 6.26101 6.28950 6.38738 6.42733 6.56011 6.65528 6.85100 6.92009 6.96065 7.67644 7.68969 7.83101 8.32015 8.37807 9.49053 10.03658 10.38840 11.41824 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.002819 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.957431 B = 9929.996755 C =11610.178824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.139 4.139 5 C 0.168 3.832 6 H 0.066 0.934 7 N -0.710 5.710 8 C -0.243 4.243 9 H 0.072 0.928 10 C -0.010 4.010 11 N -0.932 5.932 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.078 3.922 17 N -0.585 5.585 18 C 0.578 3.422 19 O -0.551 6.551 20 C 0.098 3.902 21 C -0.149 4.149 22 C 0.116 3.884 23 N -0.482 5.482 24 C 0.036 3.964 25 C -0.122 4.122 26 C -0.131 4.131 27 C 0.034 3.966 28 C -0.131 4.131 29 C 0.107 3.893 30 N -0.444 5.444 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.055 0.945 48 H 0.085 0.915 49 H 0.145 0.855 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.164 9.151 -21.233 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.055 3.945 6 H 0.084 0.916 7 N -0.350 5.350 8 C -0.374 4.374 9 H 0.089 0.911 10 C -0.206 4.206 11 N -0.579 5.579 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.047 4.047 17 N -0.316 5.316 18 C 0.364 3.636 19 O -0.430 6.430 20 C -0.041 4.041 21 C -0.172 4.172 22 C 0.013 3.987 23 N -0.203 5.203 24 C -0.090 4.090 25 C -0.160 4.160 26 C -0.169 4.169 27 C -0.093 4.093 28 C -0.152 4.152 29 C -0.053 4.053 30 N -0.155 5.155 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.160 0.840 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.162 0.838 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.902 9.063 -20.819 23.461 hybrid contribution 0.157 0.002 -0.186 0.243 sum -5.745 9.064 -21.005 23.588 Atomic orbital electron populations 1.22127 0.95104 1.02237 1.02381 1.21595 0.94270 0.96155 0.84700 0.90920 1.23062 0.99472 0.99688 0.95535 1.21439 0.94377 0.89418 0.89222 0.91650 1.42279 1.09523 1.27815 1.55386 1.19206 0.86789 1.06800 1.24595 0.91053 1.24745 0.97552 0.98364 0.99957 1.69649 1.30911 1.22322 1.35042 0.86268 0.84100 0.78381 0.77415 1.21253 1.21730 1.21157 1.23849 0.95821 0.86312 0.98723 1.48492 1.50349 1.28834 1.03908 1.17543 0.80580 0.83918 0.81510 1.90722 1.41118 1.27633 1.83563 1.21046 0.96803 0.93737 0.92471 1.22546 1.00462 1.01379 0.92815 1.19236 0.95928 0.94752 0.88788 1.62373 1.17927 1.23952 1.16051 1.23403 0.86845 1.01467 0.97267 1.22493 0.99586 0.96229 0.97729 1.22415 0.97156 0.98305 0.99064 1.23059 1.00398 0.86874 0.98933 1.22256 0.98081 0.96835 0.98030 1.22977 0.96179 0.98042 0.88059 1.68085 1.06757 1.03718 1.36952 0.92517 0.91788 0.91678 0.90391 0.90416 0.77931 0.93382 0.91557 0.88153 0.84005 0.89400 0.92719 0.90570 0.90412 0.91056 0.90590 0.92616 0.89683 0.83759 0.81401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.11 37.16 0.34 -1.95 16 2 C 0.14 2.13 3.45 -66.95 -0.23 1.89 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 4 C -0.14 -2.26 6.13 -24.90 -0.15 -2.41 16 5 C 0.17 3.27 3.73 -65.66 -0.24 3.03 16 6 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 7 N -0.71 -17.12 5.24 -51.24 -0.27 -17.38 16 8 C -0.24 -6.49 9.96 -15.06 -0.15 -6.64 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 11 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 12 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.08 1.44 5.65 -2.41 -0.01 1.43 16 17 N -0.58 -10.01 3.06 -163.85 -0.50 -10.51 16 18 C 0.58 10.01 7.63 -12.17 -0.09 9.92 16 19 O -0.55 -10.28 15.34 5.35 0.08 -10.20 16 20 C 0.10 1.52 6.72 -83.05 -0.56 0.96 16 21 C -0.15 -1.96 7.52 -38.84 -0.29 -2.25 16 22 C 0.12 1.31 4.87 -83.63 -0.41 0.90 16 23 N -0.48 -4.64 5.29 -166.98 -0.88 -5.53 16 24 C 0.04 0.30 6.44 -1.90 -0.01 0.29 16 25 C -0.12 -0.77 7.06 -24.87 -0.18 -0.95 16 26 C -0.13 -0.86 6.93 -25.38 -0.18 -1.03 16 27 C 0.03 0.29 6.51 -2.75 -0.02 0.27 16 28 C -0.13 -1.39 10.06 -39.14 -0.39 -1.79 16 29 C 0.11 1.30 11.17 -17.63 -0.20 1.10 16 30 N -0.44 -6.76 6.59 -9.89 -0.07 -6.83 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.00 6.87 -51.93 -0.36 0.64 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.29 7.72 -51.93 -0.40 0.89 16 36 H 0.39 9.90 7.76 -40.82 -0.32 9.58 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.10 1.91 5.86 -51.93 -0.30 1.61 16 40 H 0.14 1.85 6.75 -52.49 -0.35 1.49 16 41 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 42 H 0.05 0.50 7.10 -51.93 -0.37 0.13 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.53 6.34 -51.92 -0.33 0.20 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 50 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -31.03 396.20 -10.73 -41.77 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.89 Total: 10.16 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.87 Total: 2.39 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -0.99 Total: -66.89 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.03 -10.73 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989124060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.256 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds