Wall clock time and date at job start Wed Apr 1 2020 02:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.87048 * 2 1 4 4 C 1.54328 * 110.01088 * 121.09528 * 2 1 3 5 5 C 1.55154 * 102.94254 * 141.68314 * 4 2 1 6 6 H 1.09001 * 111.00333 * 82.61069 * 5 4 2 7 7 N 1.46493 * 111.00702 * 206.42657 * 5 4 2 8 8 C 1.36935 * 120.00280 * 204.99941 * 7 5 4 9 9 H 1.07996 * 119.99571 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00053 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00299 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99999 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47350 * 59.99802 * 12 10 8 14 14 H 1.48498 * 109.47313 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46887 * 299.99911 * 12 10 8 16 16 C 1.55138 * 101.48549 * 324.33665 * 5 4 2 17 17 N 1.47023 * 109.88235 * 238.98232 * 2 1 3 18 18 C 1.34769 * 125.64663 * 61.45634 * 17 2 1 19 19 O 1.21518 * 120.00270 * 359.97438 * 18 17 2 20 20 C 1.48192 * 120.00039 * 180.02562 * 18 17 2 21 21 C 1.39025 * 119.69049 * 180.02562 * 20 18 17 22 22 C 1.39449 * 118.95812 * 179.97438 * 21 20 18 23 23 N 1.39192 * 120.83583 * 180.02562 * 22 21 20 24 24 C 1.48528 * 110.99841 * 296.65816 * 23 22 21 25 25 C 1.54937 * 103.22718 * 159.71929 * 24 23 22 26 26 C 1.54593 * 102.92303 * 322.58529 * 25 24 23 27 27 C 1.47907 * 111.00011 * 54.05356 * 23 22 21 28 28 C 1.39421 * 118.33405 * 359.97438 * 22 21 20 29 29 C 1.38233 * 119.26355 * 0.02562 * 28 22 21 30 30 N 1.31643 * 120.99135 * 359.97438 * 29 28 22 31 31 H 1.09002 * 109.47305 * 179.56478 * 1 2 3 32 32 H 1.08998 * 109.47570 * 299.56135 * 1 2 3 33 33 H 1.08997 * 109.47060 * 59.56224 * 1 2 3 34 34 H 1.08997 * 110.71957 * 260.04971 * 4 2 1 35 35 H 1.08997 * 110.71536 * 23.32165 * 4 2 1 36 36 H 0.97007 * 120.00111 * 25.00061 * 7 5 4 37 37 H 0.97003 * 120.00350 * 179.97438 * 11 10 8 38 38 H 1.08999 * 110.49257 * 278.45060 * 16 5 4 39 39 H 1.08996 * 110.34550 * 156.06074 * 16 5 4 40 40 H 1.07998 * 120.52426 * 359.95511 * 21 20 18 41 41 H 1.09008 * 110.66749 * 278.15021 * 24 23 22 42 42 H 1.08997 * 110.67248 * 41.28130 * 24 23 22 43 43 H 1.09003 * 110.72155 * 204.22274 * 25 24 23 44 44 H 1.09002 * 110.72799 * 80.94460 * 25 24 23 45 45 H 1.09002 * 110.30625 * 263.04202 * 26 25 24 46 46 H 1.08998 * 110.31356 * 140.87478 * 26 25 24 47 47 H 1.09009 * 109.91561 * 333.50693 * 27 23 22 48 48 H 1.08994 * 109.92082 * 94.60574 * 27 23 22 49 49 H 1.08006 * 120.36751 * 179.97438 * 28 22 21 50 50 H 1.07998 * 119.50066 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 6 3.2918 -1.5107 0.6895 6 1 4.1683 -0.8636 0.6573 7 7 3.5610 -2.7158 1.4778 8 6 4.8254 -3.2400 1.5171 9 1 5.6243 -2.7647 0.9672 10 6 5.0806 -4.3815 2.2644 11 7 4.1073 -4.9598 2.9357 12 14 6.8056 -5.0962 2.3186 13 1 7.7424 -4.0868 2.8742 14 1 6.8133 -6.3062 3.1794 15 1 7.2323 -5.4641 0.9446 16 6 2.8130 -1.8793 -0.7394 17 7 2.0300 -0.7125 -1.1849 18 6 1.8050 -0.3603 -2.4661 19 8 1.1367 0.6230 -2.7177 20 6 2.3716 -1.1728 -3.5684 21 6 2.1359 -0.8033 -4.8877 22 6 2.6768 -1.5785 -5.9129 23 7 2.4659 -1.2442 -7.2475 24 6 1.0237 -1.3219 -7.5942 25 6 0.9177 -0.4464 -8.8681 26 6 1.9040 0.7079 -8.5775 27 6 2.8699 0.1535 -7.5140 28 6 3.4351 -2.6963 -5.5676 29 6 3.6244 -2.9981 -4.2320 30 7 3.1007 -2.2467 -3.2864 31 1 -0.3634 -1.0276 -0.0078 32 1 -0.3634 0.5070 0.8939 33 1 -0.3633 0.5206 -0.8860 34 1 2.3556 -0.0451 2.0190 35 1 1.3103 -1.4471 1.6178 36 1 2.8435 -3.1424 1.9719 37 1 4.2855 -5.7578 3.4577 38 1 2.1853 -2.7700 -0.7136 39 1 3.6681 -2.0359 -1.3969 40 1 1.5429 0.0702 -5.1152 41 1 0.7346 -2.3507 -7.8092 42 1 0.4123 -0.9091 -6.7918 43 1 -0.0963 -0.0658 -8.9912 44 1 1.2296 -1.0077 -9.7490 45 1 1.3686 1.5737 -8.1876 46 1 2.4502 0.9757 -9.4819 47 1 2.7939 0.7427 -6.6001 48 1 3.8933 0.1793 -7.8882 49 1 3.8691 -3.3201 -6.3352 50 1 4.2115 -3.8629 -3.9601 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989124060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:49 Heat of formation + Delta-G solvation = 20.680838 kcal Electronic energy + Delta-G solvation = -30427.115058 eV Core-core repulsion = 26454.195207 eV Total energy + Delta-G solvation = -3972.919851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12438 -40.96459 -39.46831 -38.71542 -35.99254 -34.59107 -33.30540 -33.09135 -32.02778 -30.40652 -30.06541 -29.93835 -26.76557 -26.14306 -25.40989 -24.85055 -22.98262 -22.17623 -21.86106 -21.77428 -20.35485 -19.25782 -18.56359 -18.31424 -17.42059 -17.12000 -16.89211 -16.61266 -16.39376 -16.21397 -15.67620 -15.38615 -15.31773 -15.16396 -14.81003 -14.66209 -14.43132 -14.13822 -13.93939 -13.69779 -13.51974 -13.47282 -13.42261 -13.06984 -12.94024 -12.83319 -12.77553 -12.36328 -12.32517 -12.19686 -12.15051 -12.05042 -11.73658 -11.52577 -11.50193 -11.33084 -11.00491 -10.64358 -10.40540 -10.34387 -9.82190 -9.66128 -9.00235 -7.91086 -5.20634 -0.45107 -0.01582 1.51831 1.53928 1.59175 1.59955 1.83023 2.59178 2.64422 2.70878 2.99017 3.39765 3.46436 3.60194 3.74388 3.78918 3.81163 3.87541 3.90227 3.99633 4.03742 4.15992 4.22197 4.31965 4.37555 4.40512 4.47709 4.50638 4.51526 4.58445 4.67631 4.72252 4.79021 4.83974 4.87454 4.96658 4.98767 5.00978 5.08207 5.14385 5.20244 5.21022 5.24092 5.34307 5.38592 5.54134 5.57053 5.60684 6.03834 6.29194 6.41015 6.64841 7.01866 7.37041 8.07987 8.33476 9.31693 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.002819 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.957431 B = 9929.996755 C =11610.178824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 H 0.081 0.919 4 C -0.125 4.125 5 C 0.161 3.839 6 H 0.063 0.937 7 N -0.720 5.720 8 C -0.240 4.240 9 H 0.077 0.923 10 C -0.070 4.070 11 N -0.968 5.968 12 Si 0.970 3.030 13 H -0.280 1.280 14 H -0.298 1.298 15 H -0.276 1.276 16 C 0.099 3.901 17 N -0.588 5.588 18 C 0.574 3.426 19 O -0.570 6.570 20 C 0.072 3.928 21 C -0.145 4.145 22 C 0.119 3.881 23 N -0.482 5.482 24 C 0.031 3.969 25 C -0.116 4.116 26 C -0.128 4.128 27 C 0.029 3.971 28 C -0.114 4.114 29 C 0.101 3.899 30 N -0.472 5.472 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.093 0.907 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.040 0.960 48 H 0.091 0.909 49 H 0.174 0.826 50 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.599 9.559 -23.314 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.031 3.969 3 H 0.099 0.901 4 C -0.164 4.164 5 C 0.051 3.949 6 H 0.081 0.919 7 N -0.359 5.359 8 C -0.372 4.372 9 H 0.094 0.906 10 C -0.262 4.262 11 N -0.618 5.618 12 Si 0.799 3.201 13 H -0.206 1.206 14 H -0.224 1.224 15 H -0.202 1.202 16 C -0.026 4.026 17 N -0.319 5.319 18 C 0.362 3.638 19 O -0.450 6.450 20 C -0.066 4.066 21 C -0.169 4.169 22 C 0.016 3.984 23 N -0.203 5.203 24 C -0.095 4.095 25 C -0.154 4.154 26 C -0.166 4.166 27 C -0.097 4.097 28 C -0.135 4.135 29 C -0.058 4.058 30 N -0.184 5.184 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.155 0.845 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.059 0.941 48 H 0.109 0.891 49 H 0.192 0.808 50 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.342 9.522 -22.937 25.404 hybrid contribution -0.037 -0.073 0.334 0.344 sum -5.379 9.449 -22.603 25.082 Atomic orbital electron populations 1.22050 0.93877 1.01955 1.03070 1.21712 0.95245 0.96187 0.83759 0.90140 1.22958 0.97725 0.99538 0.96189 1.21573 0.95724 0.88134 0.89504 0.91911 1.42377 1.08491 1.29022 1.56009 1.19557 0.87842 1.06415 1.23354 0.90550 1.25501 1.01035 0.99220 1.00477 1.69802 1.32770 1.22784 1.36424 0.85269 0.80049 0.77288 0.77489 1.20581 1.22450 1.20202 1.23389 0.95367 0.86096 0.97765 1.48503 1.50404 1.28493 1.04479 1.17900 0.80173 0.83863 0.81847 1.90695 1.41984 1.28497 1.83848 1.20852 0.98597 0.94564 0.92550 1.22542 1.00388 1.01464 0.92491 1.19420 0.95273 0.94481 0.89255 1.62500 1.18763 1.24611 1.14431 1.23497 0.85821 1.02262 0.97899 1.22500 1.00295 0.95725 0.96848 1.22426 0.96884 0.98328 0.98965 1.23139 1.01381 0.86170 0.98992 1.22537 0.96611 0.96310 0.98025 1.23373 0.95929 0.98130 0.88395 1.67958 1.07665 1.04249 1.38572 0.93219 0.89253 0.92793 0.88722 0.90631 0.79095 0.94040 0.93446 0.88677 0.84452 0.88838 0.93976 0.89357 0.89497 0.90894 0.89071 0.94117 0.89096 0.80822 0.79427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.11 71.98 0.66 -3.55 16 2 C 0.13 4.10 3.45 45.34 0.16 4.26 16 3 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.13 -4.01 6.13 31.78 0.19 -3.81 16 5 C 0.16 6.31 3.73 46.46 0.17 6.48 16 6 H 0.06 2.50 8.09 -2.39 -0.02 2.48 16 7 N -0.72 -35.06 5.24 -316.03 -1.66 -36.72 16 8 C -0.24 -12.86 9.96 84.03 0.84 -12.02 16 9 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 10 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 11 N -0.97 -57.74 13.06 21.65 0.28 -57.46 16 12 Si 0.97 44.94 29.55 68.60 2.03 46.97 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 16 C 0.10 3.72 5.65 86.94 0.49 4.21 16 17 N -0.59 -20.30 3.06 -790.59 -2.42 -22.73 16 18 C 0.57 20.24 7.63 86.89 0.66 20.90 16 19 O -0.57 -21.57 15.34 -3.77 -0.06 -21.62 16 20 C 0.07 2.25 6.72 41.83 0.28 2.53 16 21 C -0.15 -3.83 7.52 22.75 0.17 -3.66 16 22 C 0.12 2.55 4.87 38.55 0.19 2.73 16 23 N -0.48 -8.46 5.29 -682.21 -3.61 -12.07 16 24 C 0.03 0.47 6.44 86.65 0.56 1.02 16 25 C -0.12 -1.20 7.06 31.80 0.22 -0.98 16 26 C -0.13 -1.41 6.93 31.47 0.22 -1.19 16 27 C 0.03 0.46 6.51 86.44 0.56 1.02 16 28 C -0.11 -2.20 10.06 22.55 0.23 -1.97 16 29 C 0.10 2.35 11.17 84.72 0.95 3.29 16 30 N -0.47 -14.44 6.59 -185.21 -1.22 -15.66 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.63 6.87 -2.39 -0.02 1.61 16 34 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 35 H 0.08 2.47 7.72 -2.39 -0.02 2.45 16 36 H 0.38 19.68 7.76 -92.70 -0.72 18.96 16 37 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.10 3.69 5.86 -2.39 -0.01 3.67 16 40 H 0.14 3.67 6.75 -2.91 -0.02 3.65 16 41 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.04 0.75 7.10 -2.39 -0.02 0.73 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.04 0.76 6.34 -2.38 -0.02 0.74 16 48 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 50 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -67.06 396.20 0.59 -66.48 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.23 Total: 36.96 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 7.01 Total: 15.85 kcal Atomic # 7 Polarization: -136.01 SS G_CDS: -8.62 Total: -144.63 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.06 0.59 -66.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989124060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.157 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds