Wall clock time and date at job start Wed Apr 1 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.87206 * 2 1 4 4 C 1.54319 * 109.88542 * 238.82509 * 2 1 3 5 5 C 1.55156 * 102.94319 * 262.77482 * 4 2 1 6 6 H 1.08997 * 111.04152 * 82.58313 * 5 4 2 7 7 N 1.46496 * 111.00531 * 206.42331 * 5 4 2 8 8 C 1.36943 * 120.00200 * 198.64791 * 7 5 4 9 9 H 1.08001 * 119.99383 * 359.97438 * 8 7 5 10 10 C 1.38803 * 120.00348 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99572 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00229 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46828 * 269.99878 * 12 10 8 14 14 H 1.48497 * 109.46869 * 29.99995 * 12 10 8 15 15 H 1.48498 * 109.47344 * 150.00011 * 12 10 8 16 16 C 1.54916 * 101.57888 * 324.49774 * 5 4 2 17 17 N 1.47020 * 109.88520 * 121.01173 * 2 1 3 18 18 C 1.34773 * 125.64987 * 300.44898 * 17 2 1 19 19 O 1.21598 * 119.99730 * 356.30832 * 18 17 2 20 20 C 1.47543 * 120.00321 * 176.31185 * 18 17 2 21 21 C 1.40347 * 120.47261 * 26.18382 * 20 18 17 22 22 C 1.36852 * 118.49613 * 180.02562 * 21 20 18 23 23 C 1.39405 * 119.37758 * 359.97438 * 22 21 20 24 24 N 1.38454 * 119.54037 * 179.97438 * 23 22 21 25 25 C 1.48534 * 110.99896 * 62.60332 * 24 23 22 26 26 C 1.54936 * 103.22503 * 159.72154 * 25 24 23 27 27 C 1.54599 * 102.92170 * 322.58608 * 26 25 24 28 28 C 1.47899 * 110.99866 * 179.97438 * 24 23 22 29 29 N 1.32605 * 120.91739 * 0.02562 * 23 22 21 30 30 C 1.31677 * 121.63931 * 359.69592 * 29 23 22 31 31 H 1.08996 * 109.47423 * 300.43732 * 1 2 3 32 32 H 1.09003 * 109.47214 * 60.43955 * 1 2 3 33 33 H 1.09007 * 109.46855 * 180.44145 * 1 2 3 34 34 H 1.08994 * 110.72492 * 144.40902 * 4 2 1 35 35 H 1.08998 * 110.71809 * 21.13651 * 4 2 1 36 36 H 0.97001 * 120.00129 * 18.64964 * 7 5 4 37 37 H 0.96997 * 120.00513 * 0.02562 * 11 10 8 38 38 H 1.08997 * 110.36566 * 155.84827 * 16 5 4 39 39 H 1.08998 * 110.36224 * 278.16948 * 16 5 4 40 40 H 1.08007 * 120.75276 * 0.02562 * 21 20 18 41 41 H 1.07996 * 120.31644 * 179.97438 * 22 21 20 42 42 H 1.09005 * 110.66691 * 278.15442 * 25 24 23 43 43 H 1.08995 * 110.66844 * 41.28524 * 25 24 23 44 44 H 1.09001 * 110.72513 * 204.22884 * 26 25 24 45 45 H 1.08999 * 110.72769 * 80.94531 * 26 25 24 46 46 H 1.08996 * 110.30532 * 263.04182 * 27 26 25 47 47 H 1.09000 * 110.30715 * 140.87330 * 27 26 25 48 48 H 1.08998 * 109.92069 * 333.50902 * 28 24 23 49 49 H 1.09001 * 109.91749 * 94.80422 * 28 24 23 50 50 H 1.07997 * 119.74316 * 180.28689 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7512 -1.2416 5 6 2.3519 -2.1704 -0.6893 6 1 1.4457 -2.7751 -0.6564 7 7 3.3937 -2.8332 -1.4776 8 6 3.5390 -4.1934 -1.4145 9 1 2.8857 -4.7775 -0.7832 10 6 4.5258 -4.8215 -2.1618 11 7 5.3222 -4.1096 -2.9307 12 14 4.7243 -6.6769 -2.0751 13 1 5.6754 -7.0226 -0.9883 14 1 3.4068 -7.3032 -1.7978 15 1 5.2487 -7.1797 -3.3703 16 6 2.8568 -1.8486 0.7395 17 7 2.0300 -0.7123 1.1849 18 6 1.7753 -0.3810 2.4662 19 8 1.1330 0.6201 2.7191 20 6 2.2758 -1.2328 3.5620 21 6 3.4176 -2.0284 3.3804 22 6 3.8461 -2.8034 4.4237 23 6 3.1425 -2.7802 5.6270 24 7 3.5728 -3.5633 6.6846 25 6 4.9296 -3.1560 7.1310 26 6 5.0158 -3.7265 8.5689 27 6 3.5842 -3.5129 9.1120 28 6 2.6937 -3.3935 7.8617 29 7 2.0664 -2.0192 5.7723 30 6 1.6238 -1.2548 4.7957 31 1 -0.3634 0.5206 0.8860 32 1 -0.3634 0.5070 -0.8939 33 1 -0.3633 -1.0277 0.0079 34 1 2.9656 -0.2854 -1.6178 35 1 1.2918 -0.7918 -2.0189 36 1 3.9808 -2.3086 -2.0443 37 1 5.2199 -3.1460 -2.9749 38 1 2.7088 -2.7059 1.3961 39 1 3.9091 -1.5656 0.7151 40 1 3.9461 -2.0291 2.4384 41 1 4.7211 -3.4272 4.3160 42 1 5.6940 -3.6013 6.4940 43 1 5.0212 -2.0700 7.1418 44 1 5.7406 -3.1691 9.1622 45 1 5.2664 -4.7871 8.5488 46 1 3.5355 -2.5963 9.6997 47 1 3.2771 -4.3671 9.7155 48 1 2.2217 -2.4114 7.8343 49 1 1.9327 -4.1739 7.8726 50 1 0.7468 -0.6435 4.9491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989561785.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:05 Heat of formation + Delta-G solvation = 44.269005 kcal Electronic energy + Delta-G solvation = -30411.285680 eV Core-core repulsion = 26439.388688 eV Total energy + Delta-G solvation = -3971.896991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17295 -40.03149 -38.39629 -37.37383 -34.56568 -33.57645 -32.76807 -31.56307 -31.30116 -29.28981 -29.25067 -28.17696 -25.80903 -24.52476 -23.86074 -23.64051 -22.25581 -21.32681 -21.01836 -20.45279 -19.25425 -17.77157 -17.58660 -17.27446 -16.72250 -16.01101 -15.81172 -15.52776 -14.95509 -14.66196 -14.56807 -14.38413 -14.05697 -13.92984 -13.75767 -13.44711 -13.33989 -13.12130 -12.88466 -12.76771 -12.53745 -12.40657 -12.39262 -11.98241 -11.92110 -11.70056 -11.52756 -11.07455 -11.00471 -10.91334 -10.72720 -10.61561 -10.37512 -10.17508 -10.09071 -9.99994 -9.93958 -9.48666 -9.30151 -9.06460 -8.55332 -8.31530 -7.23240 -6.23985 -3.27312 0.60679 1.16526 2.77979 3.05587 3.33284 3.45669 3.49234 3.63519 3.74474 4.08720 4.26915 4.44038 4.52024 4.59583 4.60728 4.78039 4.87451 4.93285 4.95866 4.99523 5.04558 5.11206 5.14434 5.32833 5.36239 5.45468 5.46867 5.48732 5.52739 5.57655 5.63194 5.67405 5.71905 5.73966 5.76039 5.89887 5.90565 5.94559 5.96383 6.03339 6.14224 6.23221 6.29732 6.30573 6.38559 6.52027 6.68519 6.89509 7.61913 7.68197 7.75012 8.23246 8.61614 9.04419 9.91155 10.03993 11.23670 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008619 B = 0.003342 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.869310 B = 8377.222391 C =11139.874237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.073 0.927 4 C -0.138 4.138 5 C 0.178 3.822 6 H 0.067 0.933 7 N -0.723 5.723 8 C -0.341 4.341 9 H 0.067 0.933 10 C -0.038 4.038 11 N -0.939 5.939 12 Si 1.081 2.919 13 H -0.294 1.294 14 H -0.293 1.293 15 H -0.287 1.287 16 C 0.065 3.935 17 N -0.603 5.603 18 C 0.580 3.420 19 O -0.547 6.547 20 C -0.207 4.207 21 C -0.031 4.031 22 C -0.183 4.183 23 C 0.320 3.680 24 N -0.462 5.462 25 C 0.043 3.957 26 C -0.124 4.124 27 C -0.133 4.133 28 C 0.034 3.966 29 N -0.525 5.525 30 C 0.181 3.819 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.370 0.630 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 4.880 18.998 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.091 0.909 4 C -0.177 4.177 5 C 0.066 3.934 6 H 0.084 0.916 7 N -0.365 5.365 8 C -0.472 4.472 9 H 0.085 0.915 10 C -0.236 4.236 11 N -0.583 5.583 12 Si 0.911 3.089 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.213 1.213 16 C -0.061 4.061 17 N -0.335 5.335 18 C 0.369 3.631 19 O -0.427 6.427 20 C -0.213 4.213 21 C -0.057 4.057 22 C -0.205 4.205 23 C 0.088 3.912 24 N -0.180 5.180 25 C -0.082 4.082 26 C -0.162 4.162 27 C -0.171 4.171 28 C -0.093 4.093 29 N -0.239 5.239 30 C 0.022 3.978 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.204 0.796 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.175 0.825 41 H 0.160 0.840 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.100 0.900 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.457 3.377 19.379 19.972 hybrid contribution -0.278 1.994 -0.190 2.023 sum -3.735 5.372 19.189 20.273 Atomic orbital electron populations 1.22136 0.94833 1.02403 1.02573 1.21499 0.94553 0.95979 0.84280 0.90924 1.23006 1.01760 0.96859 0.96054 1.21237 0.92627 0.91121 0.88400 0.91552 1.42335 1.37351 1.05108 1.51679 1.20064 1.17312 0.83248 1.26537 0.91481 1.25792 0.94731 1.06800 0.96306 1.70869 1.39914 1.07159 1.40387 0.83224 0.75350 0.74045 0.76265 1.22135 1.22010 1.21293 1.23812 0.94601 0.87519 1.00119 1.48486 1.50024 1.30584 1.04452 1.17615 0.79725 0.84477 0.81267 1.90747 1.41722 1.26708 1.83516 1.20771 1.00234 1.03439 0.96837 1.22115 0.93594 0.90506 0.99501 1.21301 1.03416 1.03289 0.92530 1.20126 0.90719 0.87874 0.92450 1.61743 1.04424 1.45719 1.06120 1.23353 0.88813 0.99305 0.96768 1.22521 0.97062 1.02147 0.94449 1.22454 0.94850 1.02418 0.97416 1.22911 0.95573 1.03834 0.86993 1.67668 1.15349 1.08187 1.32651 1.22668 0.96861 0.91930 0.86297 0.91432 0.91761 0.92369 0.90636 0.89944 0.79560 0.93244 0.90506 0.90993 0.82491 0.83956 0.88857 0.92554 0.90403 0.90218 0.91192 0.90684 0.89797 0.89973 0.81677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.06 37.16 0.34 -1.83 16 2 C 0.14 2.03 3.47 -66.96 -0.23 1.80 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -2.07 6.12 -24.90 -0.15 -2.22 16 5 C 0.18 3.24 3.69 -65.78 -0.24 3.00 16 6 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 7 N -0.72 -16.44 5.27 -51.35 -0.27 -16.71 16 8 C -0.34 -8.87 9.98 -15.06 -0.15 -9.02 16 9 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 10 C -0.04 -1.04 5.50 -17.43 -0.10 -1.13 16 11 N -0.94 -27.47 13.70 55.49 0.76 -26.71 16 12 Si 1.08 24.73 29.92 -169.99 -5.09 19.64 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 16 C 0.07 1.07 4.72 -2.53 -0.01 1.06 16 17 N -0.60 -9.39 3.08 -164.23 -0.51 -9.90 16 18 C 0.58 9.40 7.41 -12.47 -0.09 9.31 16 19 O -0.55 -9.94 15.68 5.28 0.08 -9.85 16 20 C -0.21 -3.03 5.73 -104.82 -0.60 -3.63 16 21 C -0.03 -0.43 7.99 -39.29 -0.31 -0.75 16 22 C -0.18 -2.34 9.38 -39.65 -0.37 -2.71 16 23 C 0.32 4.16 6.20 -155.28 -0.96 3.20 16 24 N -0.46 -5.17 5.28 -169.29 -0.89 -6.06 16 25 C 0.04 0.37 6.03 -1.90 -0.01 0.36 16 26 C -0.12 -0.84 7.06 -24.87 -0.18 -1.01 16 27 C -0.13 -0.95 6.93 -25.39 -0.18 -1.13 16 28 C 0.03 0.33 6.34 -2.77 -0.02 0.31 16 29 N -0.52 -7.16 8.11 -12.14 -0.10 -7.26 16 30 C 0.18 2.51 10.76 -17.13 -0.18 2.33 16 31 H 0.07 0.99 6.86 -51.93 -0.36 0.63 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 35 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 36 H 0.37 8.69 6.54 -40.82 -0.27 8.42 16 37 H 0.26 7.33 6.77 -40.82 -0.28 7.05 16 38 H 0.08 1.28 6.09 -51.93 -0.32 0.96 16 39 H 0.07 1.21 7.32 -51.93 -0.38 0.83 16 40 H 0.16 2.16 4.57 -52.48 -0.24 1.92 16 41 H 0.14 1.59 8.01 -52.49 -0.42 1.17 16 42 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 43 H 0.06 0.51 7.99 -51.93 -0.42 0.09 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.92 6.48 -51.93 -0.34 0.58 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.17 2.10 7.86 -52.49 -0.41 1.69 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -31.02 392.26 -11.23 -42.25 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.68 Total: 10.75 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -3.46 Total: -2.07 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -1.01 Total: -66.64 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.09 Total: 19.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.02 -11.23 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989561785.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.521 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds