Wall clock time and date at job start Wed Apr 1 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.87206 * 2 1 4 4 C 1.54319 * 109.88542 * 238.82509 * 2 1 3 5 5 C 1.55156 * 102.94319 * 262.77482 * 4 2 1 6 6 H 1.08997 * 111.04152 * 82.58313 * 5 4 2 7 7 N 1.46496 * 111.00531 * 206.42331 * 5 4 2 8 8 C 1.36943 * 120.00200 * 198.64791 * 7 5 4 9 9 H 1.08001 * 119.99383 * 359.97438 * 8 7 5 10 10 C 1.38803 * 120.00348 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99572 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00229 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46828 * 269.99878 * 12 10 8 14 14 H 1.48497 * 109.46869 * 29.99995 * 12 10 8 15 15 H 1.48498 * 109.47344 * 150.00011 * 12 10 8 16 16 C 1.54916 * 101.57888 * 324.49774 * 5 4 2 17 17 N 1.47020 * 109.88520 * 121.01173 * 2 1 3 18 18 C 1.34773 * 125.64987 * 300.44898 * 17 2 1 19 19 O 1.21598 * 119.99730 * 356.30832 * 18 17 2 20 20 C 1.47543 * 120.00321 * 176.31185 * 18 17 2 21 21 C 1.40347 * 120.47261 * 26.18382 * 20 18 17 22 22 C 1.36852 * 118.49613 * 180.02562 * 21 20 18 23 23 C 1.39405 * 119.37758 * 359.97438 * 22 21 20 24 24 N 1.38454 * 119.54037 * 179.97438 * 23 22 21 25 25 C 1.48534 * 110.99896 * 62.60332 * 24 23 22 26 26 C 1.54936 * 103.22503 * 159.72154 * 25 24 23 27 27 C 1.54599 * 102.92170 * 322.58608 * 26 25 24 28 28 C 1.47899 * 110.99866 * 179.97438 * 24 23 22 29 29 N 1.32605 * 120.91739 * 0.02562 * 23 22 21 30 30 C 1.31677 * 121.63931 * 359.69592 * 29 23 22 31 31 H 1.08996 * 109.47423 * 300.43732 * 1 2 3 32 32 H 1.09003 * 109.47214 * 60.43955 * 1 2 3 33 33 H 1.09007 * 109.46855 * 180.44145 * 1 2 3 34 34 H 1.08994 * 110.72492 * 144.40902 * 4 2 1 35 35 H 1.08998 * 110.71809 * 21.13651 * 4 2 1 36 36 H 0.97001 * 120.00129 * 18.64964 * 7 5 4 37 37 H 0.96997 * 120.00513 * 0.02562 * 11 10 8 38 38 H 1.08997 * 110.36566 * 155.84827 * 16 5 4 39 39 H 1.08998 * 110.36224 * 278.16948 * 16 5 4 40 40 H 1.08007 * 120.75276 * 0.02562 * 21 20 18 41 41 H 1.07996 * 120.31644 * 179.97438 * 22 21 20 42 42 H 1.09005 * 110.66691 * 278.15442 * 25 24 23 43 43 H 1.08995 * 110.66844 * 41.28524 * 25 24 23 44 44 H 1.09001 * 110.72513 * 204.22884 * 26 25 24 45 45 H 1.08999 * 110.72769 * 80.94531 * 26 25 24 46 46 H 1.08996 * 110.30532 * 263.04182 * 27 26 25 47 47 H 1.09000 * 110.30715 * 140.87330 * 27 26 25 48 48 H 1.08998 * 109.92069 * 333.50902 * 28 24 23 49 49 H 1.09001 * 109.91749 * 94.80422 * 28 24 23 50 50 H 1.07997 * 119.74316 * 180.28689 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7512 -1.2416 5 6 2.3519 -2.1704 -0.6893 6 1 1.4457 -2.7751 -0.6564 7 7 3.3937 -2.8332 -1.4776 8 6 3.5390 -4.1934 -1.4145 9 1 2.8857 -4.7775 -0.7832 10 6 4.5258 -4.8215 -2.1618 11 7 5.3222 -4.1096 -2.9307 12 14 4.7243 -6.6769 -2.0751 13 1 5.6754 -7.0226 -0.9883 14 1 3.4068 -7.3032 -1.7978 15 1 5.2487 -7.1797 -3.3703 16 6 2.8568 -1.8486 0.7395 17 7 2.0300 -0.7123 1.1849 18 6 1.7753 -0.3810 2.4662 19 8 1.1330 0.6201 2.7191 20 6 2.2758 -1.2328 3.5620 21 6 3.4176 -2.0284 3.3804 22 6 3.8461 -2.8034 4.4237 23 6 3.1425 -2.7802 5.6270 24 7 3.5728 -3.5633 6.6846 25 6 4.9296 -3.1560 7.1310 26 6 5.0158 -3.7265 8.5689 27 6 3.5842 -3.5129 9.1120 28 6 2.6937 -3.3935 7.8617 29 7 2.0664 -2.0192 5.7723 30 6 1.6238 -1.2548 4.7957 31 1 -0.3634 0.5206 0.8860 32 1 -0.3634 0.5070 -0.8939 33 1 -0.3633 -1.0277 0.0079 34 1 2.9656 -0.2854 -1.6178 35 1 1.2918 -0.7918 -2.0189 36 1 3.9808 -2.3086 -2.0443 37 1 5.2199 -3.1460 -2.9749 38 1 2.7088 -2.7059 1.3961 39 1 3.9091 -1.5656 0.7151 40 1 3.9461 -2.0291 2.4384 41 1 4.7211 -3.4272 4.3160 42 1 5.6940 -3.6013 6.4940 43 1 5.0212 -2.0700 7.1418 44 1 5.7406 -3.1691 9.1622 45 1 5.2664 -4.7871 8.5488 46 1 3.5355 -2.5963 9.6997 47 1 3.2771 -4.3671 9.7155 48 1 2.2217 -2.4114 7.8343 49 1 1.9327 -4.1739 7.8726 50 1 0.7468 -0.6435 4.9491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989561785.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:04 Heat of formation + Delta-G solvation = 26.128563 kcal Electronic energy + Delta-G solvation = -30412.072308 eV Core-core repulsion = 26439.388688 eV Total energy + Delta-G solvation = -3972.683620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.23252 -41.18984 -39.37669 -38.66904 -36.34294 -34.63603 -33.67833 -33.22694 -32.52055 -30.28865 -29.95963 -29.77821 -27.04895 -25.88419 -25.26866 -24.86439 -23.42794 -22.23491 -22.02741 -21.53347 -20.50065 -19.49895 -18.67682 -18.48336 -17.76357 -17.20593 -16.96912 -16.69504 -16.30055 -15.90403 -15.76168 -15.54422 -15.50155 -15.16046 -14.78905 -14.76123 -14.63334 -14.16731 -14.04391 -13.85705 -13.69757 -13.36547 -13.26047 -13.20711 -13.06677 -12.74819 -12.67353 -12.30608 -12.22706 -12.15600 -12.08375 -11.86576 -11.72748 -11.49106 -11.31406 -11.22558 -11.12383 -11.04551 -10.89461 -10.53411 -9.84380 -9.31425 -9.15217 -8.36506 -5.33844 -0.47599 0.10409 1.57439 1.62277 1.70750 1.80794 1.85087 2.40478 2.67634 2.71582 3.15644 3.26793 3.37617 3.56934 3.63878 3.68254 3.73617 3.80898 3.82760 3.91790 3.94577 4.02679 4.11282 4.21842 4.28047 4.35105 4.38529 4.48636 4.55690 4.59660 4.62140 4.65018 4.73879 4.78784 4.86286 4.88668 4.92282 4.94511 4.98912 5.04770 5.11358 5.14435 5.21412 5.22307 5.28876 5.38294 5.53713 5.63072 5.95202 6.34159 6.52758 6.69587 6.95248 7.07824 7.97224 8.07543 9.15002 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008619 B = 0.003342 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.869310 B = 8377.222391 C =11139.874237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 H 0.079 0.921 4 C -0.125 4.125 5 C 0.171 3.829 6 H 0.058 0.942 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.067 0.933 10 C -0.095 4.095 11 N -0.974 5.974 12 Si 1.123 2.877 13 H -0.284 1.284 14 H -0.276 1.276 15 H -0.296 1.296 16 C 0.082 3.918 17 N -0.602 5.602 18 C 0.581 3.419 19 O -0.569 6.569 20 C -0.223 4.223 21 C -0.032 4.032 22 C -0.185 4.185 23 C 0.321 3.679 24 N -0.471 5.471 25 C 0.038 3.962 26 C -0.117 4.117 27 C -0.128 4.128 28 C 0.030 3.970 29 N -0.532 5.532 30 C 0.181 3.819 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.365 0.635 37 H 0.248 0.752 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.102 0.898 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 4.371 20.532 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.097 0.903 4 C -0.163 4.163 5 C 0.060 3.940 6 H 0.076 0.924 7 N -0.374 5.374 8 C -0.462 4.462 9 H 0.085 0.915 10 C -0.287 4.287 11 N -0.621 5.621 12 Si 0.949 3.051 13 H -0.211 1.211 14 H -0.201 1.201 15 H -0.223 1.223 16 C -0.044 4.044 17 N -0.334 5.334 18 C 0.371 3.629 19 O -0.451 6.451 20 C -0.229 4.229 21 C -0.058 4.058 22 C -0.207 4.207 23 C 0.088 3.912 24 N -0.188 5.188 25 C -0.086 4.086 26 C -0.155 4.155 27 C -0.166 4.166 28 C -0.096 4.096 29 N -0.247 5.247 30 C 0.022 3.978 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.198 0.802 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.172 0.828 41 H 0.176 0.824 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.115 0.885 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.490 2.887 20.957 21.441 hybrid contribution -0.333 2.173 -0.570 2.272 sum -3.823 5.060 20.387 21.350 Atomic orbital electron populations 1.22078 0.93765 1.02201 1.03162 1.21608 0.95379 0.96020 0.83439 0.90297 1.22919 1.02359 0.94498 0.96552 1.21363 0.91076 0.92465 0.89050 0.92377 1.42418 1.38314 1.04293 1.52405 1.20328 1.16155 0.84784 1.24975 0.91471 1.26993 0.95081 1.10064 0.96541 1.70964 1.41681 1.06863 1.42598 0.82667 0.76241 0.70258 0.75972 1.21051 1.20097 1.22262 1.23462 0.94420 0.87816 0.98704 1.48483 1.49863 1.30274 1.04792 1.17810 0.79262 0.84283 0.81531 1.90729 1.42848 1.27692 1.83786 1.20698 1.01142 1.04285 0.96776 1.22080 0.93342 0.90621 0.99724 1.21465 1.03884 1.03214 0.92178 1.20414 0.90278 0.87324 0.93172 1.61783 1.05814 1.44968 1.06253 1.23498 0.87516 0.99325 0.98269 1.22543 0.97181 1.02632 0.93158 1.22449 0.94467 1.03455 0.96221 1.22957 0.95961 1.02841 0.87870 1.67744 1.15901 1.08539 1.32482 1.22795 0.96958 0.91920 0.86080 0.92663 0.89367 0.92882 0.90393 0.88563 0.80164 0.94187 0.90738 0.91263 0.82771 0.82375 0.87999 0.92924 0.88501 0.89723 0.90339 0.89454 0.91125 0.90499 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.06 71.98 0.65 -3.25 16 2 C 0.14 3.83 3.47 45.34 0.16 3.99 16 3 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 4 C -0.12 -3.58 6.12 31.78 0.19 -3.39 16 5 C 0.17 6.12 3.69 46.39 0.17 6.29 16 6 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 7 N -0.73 -33.23 5.27 -316.38 -1.67 -34.90 16 8 C -0.33 -17.13 9.98 84.03 0.84 -16.29 16 9 H 0.07 3.42 7.83 -2.91 -0.02 3.40 16 10 C -0.09 -5.16 5.50 84.86 0.47 -4.69 16 11 N -0.97 -57.56 13.70 21.65 0.30 -57.26 16 12 Si 1.12 49.48 29.92 68.60 2.05 51.53 16 13 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 16 C 0.08 2.64 4.72 86.86 0.41 3.05 16 17 N -0.60 -18.40 3.08 -791.78 -2.44 -20.84 16 18 C 0.58 18.67 7.41 86.70 0.64 19.31 16 19 O -0.57 -20.55 15.68 -4.03 -0.06 -20.61 16 20 C -0.22 -6.48 5.73 -19.99 -0.11 -6.60 16 21 C -0.03 -0.87 7.99 22.46 0.18 -0.69 16 22 C -0.19 -4.56 9.38 22.23 0.21 -4.35 16 23 C 0.32 8.05 6.20 133.25 0.83 8.88 16 24 N -0.47 -9.90 5.28 -689.53 -3.64 -13.54 16 25 C 0.04 0.60 6.03 86.65 0.52 1.12 16 26 C -0.12 -1.27 7.06 31.80 0.22 -1.05 16 27 C -0.13 -1.54 6.93 31.46 0.22 -1.32 16 28 C 0.03 0.56 6.34 86.43 0.55 1.11 16 29 N -0.53 -14.31 8.11 -192.32 -1.56 -15.87 16 30 C 0.18 5.00 10.76 85.03 0.91 5.91 16 31 H 0.05 1.56 6.86 -2.39 -0.02 1.54 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.08 2.23 8.00 -2.39 -0.02 2.21 16 35 H 0.10 2.51 7.83 -2.39 -0.02 2.49 16 36 H 0.37 17.28 6.54 -92.71 -0.61 16.67 16 37 H 0.25 14.44 6.77 -92.71 -0.63 13.81 16 38 H 0.07 2.45 6.09 -2.39 -0.01 2.44 16 39 H 0.07 2.31 7.32 -2.39 -0.02 2.29 16 40 H 0.15 4.20 4.57 -2.91 -0.01 4.18 16 41 H 0.16 3.31 8.01 -2.91 -0.02 3.28 16 42 H 0.10 1.39 8.11 -2.38 -0.02 1.37 16 43 H 0.05 0.86 7.99 -2.39 -0.02 0.84 16 44 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 1.51 6.48 -2.39 -0.02 1.49 16 49 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.17 4.37 7.86 -2.91 -0.02 4.35 16 Total: -1.00 -65.89 392.26 0.53 -65.36 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.49 Total: 38.09 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 7.06 Total: 8.03 kcal Atomic # 7 Polarization: -133.39 SS G_CDS: -9.01 Total: -142.40 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.06 Total: -20.61 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -65.89 0.53 -65.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989561785.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.493 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds