Wall clock time and date at job start Wed Apr 1 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.58286 * 2 1 4 4 C 1.53262 * 109.58191 * 239.60005 * 2 1 3 5 5 C 1.53048 * 109.48951 * 190.01324 * 4 2 1 6 6 C 1.53385 * 109.26983 * 69.26547 * 5 4 2 7 7 C 1.51115 * 108.24861 * 311.20573 * 6 5 4 8 8 N 1.30547 * 127.09198 * 195.97081 * 7 6 5 9 9 C 1.33453 * 109.68544 * 179.97438 * 8 7 6 10 10 C 1.36835 * 107.83465 * 0.02562 * 9 8 7 11 11 C 1.46762 * 126.90955 * 180.02562 * 10 9 8 12 12 O 1.21687 * 119.99330 * 157.72345 * 11 10 9 13 13 N 1.34770 * 120.00666 * 337.72753 * 11 10 9 14 14 C 1.46498 * 120.00363 * 185.62551 * 13 11 10 15 15 C 1.50700 * 109.47177 * 179.97438 * 14 13 11 16 16 C 1.29458 * 117.69174 * 95.00213 * 15 14 13 17 17 C 1.50323 * 123.65421 * 180.85622 * 16 15 14 18 18 N 1.47000 * 109.16344 * 349.02593 * 17 16 15 19 19 C 1.36943 * 121.37335 * 222.96882 * 18 17 16 20 20 H 1.08001 * 119.99655 * 166.03632 * 19 18 17 21 21 C 1.38808 * 120.00121 * 346.03451 * 19 18 17 22 22 N 1.31626 * 119.99678 * 345.76861 * 21 19 18 23 23 Si 1.86794 * 120.00322 * 165.77227 * 21 19 18 24 24 H 1.48504 * 109.46835 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47341 * 119.99812 * 23 21 19 26 26 H 1.48503 * 109.46935 * 240.00277 * 23 21 19 27 27 C 1.47340 * 117.25485 * 42.94601 * 18 17 16 28 28 C 1.49959 * 117.69847 * 274.73896 * 15 14 13 29 29 N 1.34871 * 123.91795 * 16.00493 * 7 6 5 30 30 H 1.09011 * 109.46948 * 323.30583 * 1 2 3 31 31 H 1.09000 * 109.47323 * 203.30529 * 1 2 3 32 32 H 1.09001 * 109.47051 * 83.29954 * 1 2 3 33 33 H 1.09007 * 109.47309 * 309.95674 * 4 2 1 34 34 H 1.08998 * 109.47676 * 69.97598 * 4 2 1 35 35 H 1.08999 * 109.45272 * 309.35197 * 5 4 2 36 36 H 1.08999 * 109.57247 * 189.24812 * 5 4 2 37 37 H 1.09001 * 109.70511 * 191.51913 * 6 5 4 38 38 H 1.08997 * 109.71021 * 70.89994 * 6 5 4 39 39 H 1.07997 * 126.08455 * 180.02562 * 9 8 7 40 40 H 0.97006 * 119.99879 * 5.62473 * 13 11 10 41 41 H 1.08997 * 109.47223 * 300.00149 * 14 13 11 42 42 H 1.09005 * 109.46912 * 59.99669 * 14 13 11 43 43 H 1.08004 * 118.17389 * 0.83508 * 16 15 14 44 44 H 1.08998 * 109.51567 * 108.93015 * 17 16 15 45 45 H 1.08995 * 109.52273 * 229.11635 * 17 16 15 46 46 H 0.97003 * 119.99953 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.77892 * 57.80520 * 27 18 17 48 48 H 1.08995 * 109.78353 * 178.56738 * 27 18 17 49 49 H 1.08996 * 109.32120 * 281.29294 * 28 15 14 50 50 H 1.09001 * 109.31408 * 40.72175 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7307 -1.2455 5 6 3.5534 -0.9496 -1.1227 6 6 3.8276 -1.9787 -0.0190 7 6 3.0395 -1.5792 1.2069 8 7 3.2111 -2.0087 2.4277 9 6 2.3241 -1.4272 3.2377 10 6 1.5536 -0.5868 2.4811 11 6 0.4509 0.2601 2.9508 12 8 0.1150 1.2351 2.3048 13 7 -0.1897 -0.0419 4.0974 14 6 -1.3676 0.7288 4.5034 15 6 -1.8920 0.1935 5.8108 16 6 -1.5023 0.7762 6.8992 17 6 -1.9263 0.3420 8.2744 18 7 -3.0193 -0.6339 8.1568 19 6 -4.1158 -0.5785 8.9753 20 1 -4.9995 -1.1504 8.7336 21 6 -4.0914 0.2127 10.1156 22 7 -2.9475 0.6835 10.5655 23 14 -5.6817 0.6091 11.0116 24 1 -6.8198 -0.0363 10.3091 25 1 -5.6062 0.0980 12.4039 26 1 -5.8835 2.0802 11.0345 27 6 -2.8868 -1.6739 7.1215 28 6 -2.8332 -0.9728 5.7592 29 7 2.0208 -0.6955 1.1917 30 1 -0.3633 0.8241 0.6141 31 1 -0.3634 -0.9438 0.4066 32 1 -0.3633 0.1199 -1.0207 33 1 1.5436 -1.6954 -1.3329 34 1 1.8339 -0.1309 -2.1311 35 1 4.0375 -0.0064 -0.8694 36 1 3.9471 -1.3181 -2.0700 37 1 4.8919 -1.9908 0.2161 38 1 3.5130 -2.9677 -0.3521 39 1 2.2310 -1.5907 4.3012 40 1 0.1292 -0.7695 4.6540 41 1 -1.0925 1.7766 4.6235 42 1 -2.1401 0.6413 3.7393 43 1 -0.8350 1.6212 6.8144 44 1 -1.0816 -0.1173 8.7879 45 1 -2.2704 1.2079 8.8399 46 1 -2.9305 1.2367 11.3622 47 1 -1.9709 -2.2419 7.2844 48 1 -3.7468 -2.3424 7.1579 49 1 -3.8294 -0.6207 5.4915 50 1 -2.4893 -1.6805 5.0049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000716742.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:43 Heat of formation + Delta-G solvation = 63.748907 kcal Electronic energy + Delta-G solvation = -30168.613287 eV Core-core repulsion = 26197.561007 eV Total energy + Delta-G solvation = -3971.052279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.72732 -39.48540 -37.75976 -37.43636 -35.08454 -33.95762 -33.00586 -31.10139 -30.98558 -29.87214 -29.43525 -27.59481 -26.67203 -24.44068 -23.23179 -23.05842 -22.66489 -22.22410 -21.10677 -20.34992 -19.35789 -18.18892 -17.62522 -16.54767 -16.02281 -15.82170 -15.62286 -15.53324 -15.09150 -14.99619 -14.89966 -14.44436 -14.15786 -13.92097 -13.69094 -13.60598 -13.40616 -13.28811 -13.07208 -12.56887 -12.54307 -12.20549 -12.03634 -11.94439 -11.62233 -11.60872 -11.58519 -11.40809 -11.02446 -10.91810 -10.78744 -10.58480 -10.35214 -10.25273 -9.88958 -9.87445 -9.85003 -9.62469 -9.02721 -8.77225 -8.57340 -8.02955 -6.88472 -5.77630 -3.15286 1.19532 2.17594 2.64072 2.68423 3.18251 3.36766 3.44080 3.45876 3.51846 3.88252 4.05732 4.17710 4.21315 4.46690 4.61982 4.74191 4.79200 4.87025 4.98894 5.11968 5.13074 5.19878 5.23168 5.30785 5.33611 5.36481 5.40044 5.48079 5.55161 5.56198 5.70745 5.76714 5.88003 5.98572 6.01858 6.06834 6.15058 6.30509 6.35915 6.46084 6.51724 6.69195 6.83029 6.84728 7.16751 7.29741 7.38677 7.48498 7.67182 7.75151 7.88432 8.13916 8.35684 9.17721 9.80412 10.32761 11.28283 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028224 B = 0.002059 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.817366 B =13593.825562 C =13948.935687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 H 0.096 0.904 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.035 4.035 7 C 0.224 3.776 8 N -0.491 5.491 9 C 0.033 3.967 10 C -0.077 4.077 11 C 0.590 3.410 12 O -0.543 6.543 13 N -0.705 5.705 14 C 0.162 3.838 15 C -0.175 4.175 16 C -0.117 4.117 17 C 0.175 3.825 18 N -0.599 5.599 19 C -0.232 4.232 20 H 0.074 0.926 21 C -0.013 4.013 22 N -0.916 5.916 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.144 3.856 28 C -0.088 4.088 29 N -0.417 5.417 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.179 0.821 40 H 0.404 0.596 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.126 0.874 46 H 0.253 0.747 47 H 0.025 0.975 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.178 -3.194 -24.150 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.033 3.967 3 H 0.114 0.886 4 C -0.171 4.171 5 C -0.166 4.166 6 C -0.074 4.074 7 C -0.038 4.038 8 N -0.209 5.209 9 C -0.122 4.122 10 C -0.194 4.194 11 C 0.376 3.624 12 O -0.423 6.423 13 N -0.355 5.355 14 C 0.039 3.961 15 C -0.176 4.176 16 C -0.138 4.138 17 C 0.051 3.949 18 N -0.322 5.322 19 C -0.361 4.361 20 H 0.092 0.908 21 C -0.209 4.209 22 N -0.564 5.564 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.017 3.983 28 C -0.128 4.128 29 N -0.098 5.098 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.196 0.804 40 H 0.239 0.761 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.054 0.946 45 H 0.143 0.857 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.379 -2.877 -24.359 27.475 hybrid contribution -1.176 0.537 0.592 1.422 sum 11.203 -2.340 -23.768 26.380 Atomic orbital electron populations 1.22620 0.92341 1.05235 1.03863 1.21658 0.96666 0.96383 0.81989 0.88633 1.22044 0.96329 1.01891 0.96787 1.21707 0.95868 0.99814 0.99207 1.20278 0.99492 0.99664 0.87940 1.23448 0.91501 0.93057 0.95792 1.69927 1.25107 1.26177 0.99718 1.22728 0.94094 0.95531 0.99804 1.20637 1.04623 1.08426 0.85715 1.16769 0.80518 0.83759 0.81318 1.90634 1.67268 1.28156 1.56262 1.45914 1.30142 1.36867 1.22566 1.20494 0.85596 0.94680 0.95283 1.20434 1.03121 1.01292 0.92775 1.23363 0.96052 0.96659 0.97696 1.20300 0.89802 0.95860 0.88981 1.44264 1.21103 1.29204 1.37633 1.19368 0.91301 1.24218 1.01227 0.90804 1.24835 0.97047 1.01949 0.97033 1.69906 1.22922 1.39498 1.24062 0.86090 0.82760 0.77945 0.79252 1.20458 1.21837 1.21634 1.20975 0.98740 0.90873 0.87738 1.20760 0.97684 0.95008 0.99300 1.45351 1.25265 1.32194 1.07039 0.87237 0.92467 0.91153 0.90501 0.89091 0.91001 0.89688 0.88346 0.88941 0.80352 0.76052 0.91353 0.91555 0.88771 0.94586 0.85692 0.93634 0.95731 0.92539 0.91792 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 8.22 37.15 0.31 -1.50 16 2 C 0.14 1.23 3.27 -67.82 -0.22 1.01 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -0.77 5.13 -26.57 -0.14 -0.90 16 5 C -0.13 -0.64 5.96 -26.51 -0.16 -0.79 16 6 C -0.03 -0.24 6.33 -27.48 -0.17 -0.41 16 7 C 0.22 2.48 7.64 -155.33 -1.19 1.29 16 8 N -0.49 -6.44 11.20 -10.36 -0.12 -6.55 16 9 C 0.03 0.41 11.38 -17.36 -0.20 0.21 16 10 C -0.08 -0.99 6.59 -82.35 -0.54 -1.53 16 11 C 0.59 8.17 7.12 -12.82 -0.09 8.08 16 12 O -0.54 -8.60 13.07 5.20 0.07 -8.53 16 13 N -0.70 -9.17 5.53 -62.78 -0.35 -9.52 16 14 C 0.16 2.34 5.67 -5.19 -0.03 2.31 16 15 C -0.18 -2.93 5.22 -101.00 -0.53 -3.45 16 16 C -0.12 -2.18 9.47 -35.78 -0.34 -2.52 16 17 C 0.18 4.08 5.44 -5.10 -0.03 4.05 16 18 N -0.60 -14.63 3.03 -173.56 -0.53 -15.15 16 19 C -0.23 -6.23 9.82 -15.06 -0.15 -6.38 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.36 5.16 -17.43 -0.09 -0.45 16 22 N -0.92 -25.82 10.31 55.49 0.57 -25.25 16 23 Si 0.91 21.55 29.58 -169.99 -5.03 16.52 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.14 2.86 6.59 -3.43 -0.02 2.84 16 28 C -0.09 -1.50 5.95 -28.09 -0.17 -1.66 16 29 N -0.42 -4.76 2.97 -102.73 -0.31 -5.07 16 30 H 0.11 1.38 4.84 -51.94 -0.25 1.12 16 31 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.07 0.53 7.95 -51.93 -0.41 0.11 16 33 H 0.08 0.46 8.09 -51.93 -0.42 0.03 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.18 1.82 7.78 -52.49 -0.41 1.42 16 40 H 0.40 4.74 7.75 -40.82 -0.32 4.43 16 41 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 42 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 43 H 0.09 1.60 7.73 -52.48 -0.41 1.19 16 44 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.13 3.30 5.54 -51.93 -0.29 3.01 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 1.10 7.94 -51.93 -0.41 0.68 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -31.64 391.08 -11.47 -43.12 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.93 Total: 4.35 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -3.75 Total: 0.19 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.72 Total: -61.55 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.64 -11.47 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000716742.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.864 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds