Wall clock time and date at job start Wed Apr 1 2020 02:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.68423 * 2 1 4 4 C 1.53278 * 109.54689 * 120.35818 * 2 1 3 5 5 C 1.53166 * 109.42895 * 170.01931 * 4 2 1 6 6 C 1.53380 * 109.22162 * 290.65204 * 5 4 2 7 7 C 1.51117 * 108.24199 * 48.86928 * 6 5 4 8 8 N 1.30554 * 127.08712 * 163.90469 * 7 6 5 9 9 C 1.33461 * 109.67899 * 179.83172 * 8 7 6 10 10 C 1.36827 * 107.83716 * 0.37421 * 9 8 7 11 11 C 1.46759 * 126.91355 * 179.88195 * 10 9 8 12 12 O 1.21683 * 120.00353 * 202.27775 * 11 10 9 13 13 N 1.34774 * 119.99979 * 22.55867 * 11 10 9 14 14 C 1.46505 * 120.00253 * 183.12594 * 13 11 10 15 15 C 1.50700 * 109.47168 * 179.97438 * 14 13 11 16 16 C 1.29457 * 117.69235 * 94.74151 * 15 14 13 17 17 C 1.50314 * 123.65249 * 180.58826 * 16 15 14 18 18 N 1.47008 * 109.20437 * 349.49587 * 17 16 15 19 19 C 1.36938 * 121.37394 * 222.72218 * 18 17 16 20 20 H 1.08002 * 119.99776 * 146.29676 * 19 18 17 21 21 C 1.38809 * 120.00029 * 326.28857 * 19 18 17 22 22 N 1.31615 * 119.99972 * 349.20448 * 21 19 18 23 23 Si 1.86805 * 119.99900 * 169.19623 * 21 19 18 24 24 H 1.48502 * 109.46841 * 94.97601 * 23 21 19 25 25 H 1.48499 * 109.47351 * 214.97853 * 23 21 19 26 26 H 1.48506 * 109.47144 * 334.97741 * 23 21 19 27 27 C 1.47334 * 117.24604 * 42.73931 * 18 17 16 28 28 C 1.49971 * 117.69404 * 274.99874 * 15 14 13 29 29 N 1.34873 * 123.91754 * 343.94979 * 7 6 5 30 30 H 1.08993 * 109.47273 * 156.72676 * 1 2 3 31 31 H 1.08999 * 109.46977 * 276.73096 * 1 2 3 32 32 H 1.09002 * 109.47118 * 36.71948 * 1 2 3 33 33 H 1.09002 * 109.49531 * 50.02564 * 4 2 1 34 34 H 1.08996 * 109.47021 * 290.00289 * 4 2 1 35 35 H 1.09001 * 109.51058 * 170.73100 * 5 4 2 36 36 H 1.08995 * 109.51392 * 50.57914 * 5 4 2 37 37 H 1.09003 * 109.71274 * 289.18438 * 6 5 4 38 38 H 1.08996 * 109.70693 * 168.55694 * 6 5 4 39 39 H 1.07999 * 126.07837 * 180.26352 * 9 8 7 40 40 H 0.96996 * 120.00383 * 3.11780 * 13 11 10 41 41 H 1.08997 * 109.47083 * 299.99982 * 14 13 11 42 42 H 1.09001 * 109.46869 * 59.99053 * 14 13 11 43 43 H 1.07996 * 118.17089 * 0.85474 * 16 15 14 44 44 H 1.09005 * 109.67258 * 229.47505 * 17 16 15 45 45 H 1.08998 * 109.39158 * 109.34389 * 17 16 15 46 46 H 0.97013 * 119.99620 * 179.97438 * 22 21 19 47 47 H 1.09011 * 109.77473 * 178.61764 * 27 18 17 48 48 H 1.08999 * 109.77899 * 57.81497 * 27 18 17 49 49 H 1.09002 * 109.31307 * 281.28918 * 28 15 14 50 50 H 1.08998 * 109.31314 * 40.71924 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0429 -0.7300 1.2464 5 6 3.5539 -0.9481 1.1234 6 6 3.8273 -1.9792 0.0213 7 6 3.0393 -1.5808 -1.2051 8 7 3.2120 -2.0105 -2.4258 9 6 2.3219 -1.4332 -3.2356 10 6 1.5543 -0.5887 -2.4807 11 6 0.4512 0.2572 -2.9511 12 8 0.1180 1.2355 -2.3087 13 7 -0.1965 -0.0526 -4.0917 14 6 -1.2518 0.8289 -4.5974 15 6 -1.8107 0.2608 -5.8764 16 6 -2.8703 -0.4785 -5.7939 17 6 -3.5313 -1.1223 -6.9804 18 7 -2.9468 -0.5772 -8.2143 19 6 -3.7301 -0.2398 -9.2857 20 1 -3.4558 0.5952 -9.9134 21 6 -4.8765 -0.9709 -9.5650 22 7 -5.1006 -2.1076 -8.9404 23 14 -6.1014 -0.3414 -10.8271 24 1 -5.8134 -0.9584 -12.1468 25 1 -7.4784 -0.7006 -10.4026 26 1 -5.9861 1.1352 -10.9352 27 6 -1.4835 -0.4095 -8.2507 28 6 -1.0969 0.5868 -7.1545 29 7 2.0207 -0.6968 -1.1908 30 1 -0.3633 -0.9440 -0.4060 31 1 -0.3633 0.1204 1.0206 32 1 -0.3633 0.8238 -0.6144 33 1 1.5425 -1.6944 1.3348 34 1 1.8332 -0.1293 2.1313 35 1 3.9470 -1.3157 2.0714 36 1 4.0383 -0.0056 0.8686 37 1 3.5118 -2.9674 0.3558 38 1 4.8915 -1.9924 -0.2139 39 1 2.2260 -1.6013 -4.2981 40 1 0.0360 -0.8590 -4.5778 41 1 -2.0468 0.9065 -3.8559 42 1 -0.8372 1.8184 -4.7903 43 1 -3.3058 -0.6381 -4.8186 44 1 -4.6013 -0.9150 -6.9617 45 1 -3.3684 -2.1995 -6.9452 46 1 -5.9020 -2.6183 -9.1354 47 1 -1.1807 -0.0229 -9.2240 48 1 -0.9977 -1.3677 -8.0664 49 1 -1.3669 1.5942 -7.4713 50 1 -0.0207 0.5404 -6.9882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000716743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:47 Heat of formation + Delta-G solvation = 56.431721 kcal Electronic energy + Delta-G solvation = -30126.174348 eV Core-core repulsion = 26154.804771 eV Total energy + Delta-G solvation = -3971.369576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.72812 -39.50027 -37.75782 -37.43168 -35.05449 -33.95647 -32.97492 -31.06120 -30.98023 -29.94773 -29.50983 -27.59144 -26.63998 -24.39673 -23.23044 -23.07407 -22.69375 -22.22069 -21.14135 -20.36805 -19.35981 -18.19998 -17.60368 -16.54533 -15.99553 -15.82605 -15.66646 -15.41568 -15.09911 -15.02116 -14.88439 -14.45779 -14.16805 -13.89821 -13.77107 -13.66117 -13.45646 -13.22546 -13.08534 -12.57229 -12.54582 -12.27603 -12.05391 -11.92960 -11.61795 -11.60288 -11.57310 -11.39432 -11.04717 -10.93264 -10.78502 -10.58034 -10.39067 -10.36142 -9.91934 -9.89947 -9.88209 -9.62259 -9.04888 -8.67263 -8.58479 -8.14930 -6.63118 -5.83540 -3.32319 1.19003 2.17089 2.61358 2.66251 3.17533 3.35037 3.42219 3.44413 3.49363 3.88166 4.05808 4.17883 4.21141 4.45881 4.61503 4.73969 4.79072 4.86677 4.98706 5.08831 5.12757 5.20103 5.23291 5.29882 5.30946 5.38008 5.39932 5.48084 5.54165 5.56195 5.71093 5.75967 5.84378 5.97916 6.01372 6.07053 6.14578 6.32651 6.35793 6.43859 6.50894 6.73871 6.84475 6.86879 7.09784 7.17308 7.27437 7.46327 7.69017 7.74823 7.78717 8.12848 8.41498 9.17105 9.77326 10.41153 11.26173 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026469 B = 0.002052 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.569743 B =13639.017629 C =13946.393057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 H 0.096 0.904 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.035 4.035 7 C 0.225 3.775 8 N -0.491 5.491 9 C 0.034 3.966 10 C -0.078 4.078 11 C 0.590 3.410 12 O -0.544 6.544 13 N -0.705 5.705 14 C 0.160 3.840 15 C -0.166 4.166 16 C -0.122 4.122 17 C 0.196 3.804 18 N -0.592 5.592 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.008 3.992 22 N -0.905 5.905 23 Si 0.904 3.096 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.143 3.857 28 C -0.091 4.091 29 N -0.417 5.417 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.180 0.820 40 H 0.405 0.595 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.255 0.745 47 H 0.058 0.942 48 H 0.023 0.977 49 H 0.064 0.936 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.957 1.820 21.427 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.033 3.967 3 H 0.114 0.886 4 C -0.171 4.171 5 C -0.166 4.166 6 C -0.074 4.074 7 C -0.038 4.038 8 N -0.209 5.209 9 C -0.121 4.121 10 C -0.195 4.195 11 C 0.376 3.624 12 O -0.424 6.424 13 N -0.355 5.355 14 C 0.038 3.962 15 C -0.166 4.166 16 C -0.143 4.143 17 C 0.071 3.929 18 N -0.316 5.316 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.203 1.203 27 C 0.017 3.983 28 C -0.130 4.130 29 N -0.099 5.099 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.197 0.803 40 H 0.240 0.760 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.041 0.959 49 H 0.082 0.918 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.051 1.973 21.739 27.094 hybrid contribution -1.267 0.426 -0.656 1.489 sum 14.783 2.399 21.083 25.861 Atomic orbital electron populations 1.22608 0.92331 1.05208 1.03871 1.21661 0.96657 0.96354 0.82018 0.88634 1.22072 0.96319 1.01922 0.96771 1.21728 0.95855 0.99785 0.99218 1.20281 0.99490 0.99682 0.87943 1.23454 0.91482 0.93028 0.95787 1.69938 1.25045 1.26244 0.99717 1.22733 0.94094 0.95383 0.99856 1.20635 1.04636 1.08475 0.85727 1.16764 0.80491 0.83945 0.81158 1.90638 1.67254 1.28831 1.55634 1.45914 1.37492 1.27533 1.24532 1.20510 0.89024 0.92876 0.93776 1.20482 0.99249 1.02939 0.93965 1.23284 0.95445 0.94973 1.00560 1.19675 0.96972 0.94806 0.81439 1.44003 0.99946 1.75666 1.11958 1.19079 1.04843 1.08912 1.05433 0.91844 1.25251 1.00534 0.95001 0.98388 1.69976 1.27203 1.13162 1.44477 0.86262 0.80671 0.78511 0.81219 1.21322 1.21561 1.20323 1.20984 0.86342 0.95140 0.95840 1.20767 0.97316 1.00952 0.93940 1.45357 1.25358 1.32122 1.07030 0.92431 0.91126 0.87314 0.90470 0.89092 0.89690 0.90997 0.88918 0.88348 0.80321 0.75996 0.91419 0.91307 0.88813 0.90115 0.93796 0.93548 0.92377 0.95894 0.91752 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 8.22 37.16 0.31 -1.51 16 2 C 0.14 1.23 3.27 -67.82 -0.22 1.01 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -0.77 5.14 -26.50 -0.14 -0.91 16 5 C -0.13 -0.63 5.96 -26.45 -0.16 -0.79 16 6 C -0.04 -0.24 6.33 -27.48 -0.17 -0.41 16 7 C 0.22 2.48 7.63 -155.32 -1.19 1.29 16 8 N -0.49 -6.42 11.20 -10.35 -0.12 -6.53 16 9 C 0.03 0.41 11.39 -17.35 -0.20 0.22 16 10 C -0.08 -0.99 6.58 -82.35 -0.54 -1.54 16 11 C 0.59 8.07 7.11 -12.82 -0.09 7.98 16 12 O -0.54 -8.50 13.09 5.20 0.07 -8.43 16 13 N -0.70 -9.02 5.52 -62.77 -0.35 -9.36 16 14 C 0.16 2.27 5.66 -5.19 -0.03 2.24 16 15 C -0.17 -2.71 5.23 -100.99 -0.53 -3.24 16 16 C -0.12 -2.22 9.47 -35.79 -0.34 -2.56 16 17 C 0.20 4.51 5.16 -5.10 -0.03 4.48 16 18 N -0.59 -14.51 2.97 -173.68 -0.52 -15.03 16 19 C -0.25 -6.84 9.62 -15.06 -0.14 -6.98 16 20 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 21 C 0.01 0.21 5.07 -17.43 -0.09 0.12 16 22 N -0.90 -25.78 11.52 55.49 0.64 -25.14 16 23 Si 0.90 21.42 29.57 -169.99 -5.03 16.40 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.14 2.90 6.58 -3.54 -0.02 2.88 16 28 C -0.09 -1.52 5.95 -28.18 -0.17 -1.69 16 29 N -0.42 -4.75 2.97 -102.72 -0.31 -5.05 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 32 H 0.11 1.37 4.85 -51.94 -0.25 1.11 16 33 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.18 1.80 7.90 -52.49 -0.41 1.39 16 40 H 0.40 4.70 7.89 -40.82 -0.32 4.38 16 41 H 0.07 0.98 7.79 -51.93 -0.40 0.58 16 42 H 0.07 0.99 8.11 -51.93 -0.42 0.56 16 43 H 0.09 1.53 7.74 -52.49 -0.41 1.12 16 44 H 0.08 2.06 7.01 -51.93 -0.36 1.69 16 45 H 0.04 1.09 8.12 -51.93 -0.42 0.66 16 46 H 0.25 7.02 8.31 -40.81 -0.34 6.68 16 47 H 0.06 1.16 7.96 -51.92 -0.41 0.74 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -32.01 393.39 -11.44 -43.45 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.02 Total: 3.18 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -3.75 Total: 0.58 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.64 Total: -61.11 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.07 Total: -8.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.01 -11.44 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000716743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.880 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds