Wall clock time and date at job start Wed Apr 1 2020 02:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.68423 * 2 1 4 4 C 1.53278 * 109.54689 * 120.35818 * 2 1 3 5 5 C 1.53166 * 109.42895 * 170.01931 * 4 2 1 6 6 C 1.53380 * 109.22162 * 290.65204 * 5 4 2 7 7 C 1.51117 * 108.24199 * 48.86928 * 6 5 4 8 8 N 1.30554 * 127.08712 * 163.90469 * 7 6 5 9 9 C 1.33461 * 109.67899 * 179.83172 * 8 7 6 10 10 C 1.36827 * 107.83716 * 0.37421 * 9 8 7 11 11 C 1.46759 * 126.91355 * 179.88195 * 10 9 8 12 12 O 1.21683 * 120.00353 * 202.27775 * 11 10 9 13 13 N 1.34774 * 119.99979 * 22.55867 * 11 10 9 14 14 C 1.46505 * 120.00253 * 183.12594 * 13 11 10 15 15 C 1.50700 * 109.47168 * 179.97438 * 14 13 11 16 16 C 1.29457 * 117.69235 * 94.74151 * 15 14 13 17 17 C 1.50314 * 123.65249 * 180.58826 * 16 15 14 18 18 N 1.47008 * 109.20437 * 349.49587 * 17 16 15 19 19 C 1.36938 * 121.37394 * 222.72218 * 18 17 16 20 20 H 1.08002 * 119.99776 * 146.29676 * 19 18 17 21 21 C 1.38809 * 120.00029 * 326.28857 * 19 18 17 22 22 N 1.31615 * 119.99972 * 349.20448 * 21 19 18 23 23 Si 1.86805 * 119.99900 * 169.19623 * 21 19 18 24 24 H 1.48502 * 109.46841 * 94.97601 * 23 21 19 25 25 H 1.48499 * 109.47351 * 214.97853 * 23 21 19 26 26 H 1.48506 * 109.47144 * 334.97741 * 23 21 19 27 27 C 1.47334 * 117.24604 * 42.73931 * 18 17 16 28 28 C 1.49971 * 117.69404 * 274.99874 * 15 14 13 29 29 N 1.34873 * 123.91754 * 343.94979 * 7 6 5 30 30 H 1.08993 * 109.47273 * 156.72676 * 1 2 3 31 31 H 1.08999 * 109.46977 * 276.73096 * 1 2 3 32 32 H 1.09002 * 109.47118 * 36.71948 * 1 2 3 33 33 H 1.09002 * 109.49531 * 50.02564 * 4 2 1 34 34 H 1.08996 * 109.47021 * 290.00289 * 4 2 1 35 35 H 1.09001 * 109.51058 * 170.73100 * 5 4 2 36 36 H 1.08995 * 109.51392 * 50.57914 * 5 4 2 37 37 H 1.09003 * 109.71274 * 289.18438 * 6 5 4 38 38 H 1.08996 * 109.70693 * 168.55694 * 6 5 4 39 39 H 1.07999 * 126.07837 * 180.26352 * 9 8 7 40 40 H 0.96996 * 120.00383 * 3.11780 * 13 11 10 41 41 H 1.08997 * 109.47083 * 299.99982 * 14 13 11 42 42 H 1.09001 * 109.46869 * 59.99053 * 14 13 11 43 43 H 1.07996 * 118.17089 * 0.85474 * 16 15 14 44 44 H 1.09005 * 109.67258 * 229.47505 * 17 16 15 45 45 H 1.08998 * 109.39158 * 109.34389 * 17 16 15 46 46 H 0.97013 * 119.99620 * 179.97438 * 22 21 19 47 47 H 1.09011 * 109.77473 * 178.61764 * 27 18 17 48 48 H 1.08999 * 109.77899 * 57.81497 * 27 18 17 49 49 H 1.09002 * 109.31307 * 281.28918 * 28 15 14 50 50 H 1.08998 * 109.31314 * 40.71924 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0429 -0.7300 1.2464 5 6 3.5539 -0.9481 1.1234 6 6 3.8273 -1.9792 0.0213 7 6 3.0393 -1.5808 -1.2051 8 7 3.2120 -2.0105 -2.4258 9 6 2.3219 -1.4332 -3.2356 10 6 1.5543 -0.5887 -2.4807 11 6 0.4512 0.2572 -2.9511 12 8 0.1180 1.2355 -2.3087 13 7 -0.1965 -0.0526 -4.0917 14 6 -1.2518 0.8289 -4.5974 15 6 -1.8107 0.2608 -5.8764 16 6 -2.8703 -0.4785 -5.7939 17 6 -3.5313 -1.1223 -6.9804 18 7 -2.9468 -0.5772 -8.2143 19 6 -3.7301 -0.2398 -9.2857 20 1 -3.4558 0.5952 -9.9134 21 6 -4.8765 -0.9709 -9.5650 22 7 -5.1006 -2.1076 -8.9404 23 14 -6.1014 -0.3414 -10.8271 24 1 -5.8134 -0.9584 -12.1468 25 1 -7.4784 -0.7006 -10.4026 26 1 -5.9861 1.1352 -10.9352 27 6 -1.4835 -0.4095 -8.2507 28 6 -1.0969 0.5868 -7.1545 29 7 2.0207 -0.6968 -1.1908 30 1 -0.3633 -0.9440 -0.4060 31 1 -0.3633 0.1204 1.0206 32 1 -0.3633 0.8238 -0.6144 33 1 1.5425 -1.6944 1.3348 34 1 1.8332 -0.1293 2.1313 35 1 3.9470 -1.3157 2.0714 36 1 4.0383 -0.0056 0.8686 37 1 3.5118 -2.9674 0.3558 38 1 4.8915 -1.9924 -0.2139 39 1 2.2260 -1.6013 -4.2981 40 1 0.0360 -0.8590 -4.5778 41 1 -2.0468 0.9065 -3.8559 42 1 -0.8372 1.8184 -4.7903 43 1 -3.3058 -0.6381 -4.8186 44 1 -4.6013 -0.9150 -6.9617 45 1 -3.3684 -2.1995 -6.9452 46 1 -5.9020 -2.6183 -9.1354 47 1 -1.1807 -0.0229 -9.2240 48 1 -0.9977 -1.3677 -8.0664 49 1 -1.3669 1.5942 -7.4713 50 1 -0.0207 0.5404 -6.9882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000716743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:46 Heat of formation + Delta-G solvation = 37.780063 kcal Electronic energy + Delta-G solvation = -30126.983144 eV Core-core repulsion = 26154.804771 eV Total energy + Delta-G solvation = -3972.178373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.56536 -40.62445 -39.28027 -38.08369 -36.44641 -34.67509 -34.56154 -32.72020 -31.77733 -31.51374 -30.57328 -28.61190 -27.83351 -25.95251 -24.47191 -23.97615 -23.86819 -22.98126 -22.76926 -21.31549 -20.09455 -19.51505 -19.03640 -17.58044 -17.34025 -17.06856 -16.75168 -16.63366 -16.46229 -15.85158 -15.65733 -15.52541 -15.39544 -15.20124 -15.18440 -14.81253 -14.46771 -14.35750 -14.06019 -13.90554 -13.72454 -13.28544 -13.25214 -13.18280 -12.90748 -12.79661 -12.64249 -12.61123 -12.23853 -12.12623 -12.07048 -12.02702 -11.76305 -11.66256 -11.52102 -11.24399 -10.90602 -10.73610 -10.67922 -10.13589 -9.69911 -9.47187 -8.61908 -7.89619 -5.41709 0.26556 1.07083 1.46014 1.47146 1.52971 1.57050 1.75331 2.19431 2.42414 2.49480 3.24469 3.27848 3.48274 3.56372 3.63023 3.64327 3.78262 3.88016 3.96821 4.04349 4.15320 4.28392 4.32604 4.43047 4.43574 4.53867 4.57832 4.63100 4.70671 4.73233 4.84775 4.85773 4.90394 4.92478 4.94397 5.04515 5.09032 5.12861 5.18333 5.19801 5.26856 5.34221 5.46118 5.47473 5.48574 5.63506 5.75233 6.07152 6.14312 6.38316 6.40967 6.86525 7.09181 7.14135 7.80883 8.40152 9.17697 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026469 B = 0.002052 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.569743 B =13639.017629 C =13946.393057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.128 3.872 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.121 4.121 6 C -0.037 4.037 7 C 0.227 3.773 8 N -0.523 5.523 9 C 0.031 3.969 10 C -0.100 4.100 11 C 0.593 3.407 12 O -0.565 6.565 13 N -0.698 5.698 14 C 0.172 3.828 15 C -0.138 4.138 16 C -0.140 4.140 17 C 0.208 3.792 18 N -0.613 5.613 19 C -0.263 4.263 20 H 0.064 0.936 21 C -0.046 4.046 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.138 3.862 28 C -0.084 4.084 29 N -0.421 5.421 30 H 0.040 0.960 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.194 0.806 40 H 0.412 0.588 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.015 0.985 46 H 0.251 0.749 47 H 0.058 0.942 48 H 0.025 0.975 49 H 0.065 0.935 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.824 2.617 23.365 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.027 3.973 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.159 4.159 6 C -0.076 4.076 7 C -0.036 4.036 8 N -0.242 5.242 9 C -0.123 4.123 10 C -0.217 4.217 11 C 0.381 3.619 12 O -0.446 6.446 13 N -0.349 5.349 14 C 0.050 3.950 15 C -0.138 4.138 16 C -0.160 4.160 17 C 0.083 3.917 18 N -0.337 5.337 19 C -0.394 4.394 20 H 0.082 0.918 21 C -0.242 4.242 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.194 1.194 27 C 0.013 3.987 28 C -0.123 4.123 29 N -0.102 5.102 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.211 0.789 40 H 0.248 0.752 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.131 0.869 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.043 0.957 49 H 0.083 0.917 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.946 2.782 23.682 29.844 hybrid contribution -1.738 0.182 -1.247 2.147 sum 16.208 2.964 22.435 27.836 Atomic orbital electron populations 1.22490 0.93136 1.03015 1.04634 1.21883 0.96053 0.96618 0.82756 0.89145 1.22100 0.96825 1.01879 0.95644 1.21738 0.95161 0.99173 0.99817 1.20558 0.99415 1.00892 0.86740 1.24322 0.90967 0.91785 0.96495 1.69964 1.25942 1.27426 1.00836 1.23066 0.93709 0.94892 1.00672 1.20576 1.05056 1.09290 0.86826 1.16841 0.80490 0.83721 0.80880 1.90646 1.67963 1.29802 1.56206 1.45726 1.37063 1.27578 1.24504 1.20292 0.89360 0.93029 0.92359 1.20588 0.97774 1.00527 0.94933 1.22939 0.96695 0.97013 0.99392 1.19318 0.95575 0.93756 0.83096 1.44290 1.01724 1.75754 1.11954 1.19394 1.05359 1.08716 1.05888 0.91820 1.26000 1.02370 0.95321 1.00506 1.70132 1.27519 1.14359 1.46042 0.85261 0.78103 0.78275 0.78809 1.21077 1.21874 1.19391 1.21154 0.83970 0.96228 0.97359 1.20698 0.99385 0.99599 0.92613 1.45583 1.25360 1.32197 1.07107 0.94059 0.88711 0.89990 0.90423 0.86682 0.86687 0.91316 0.87550 0.87368 0.78865 0.75164 0.91441 0.90688 0.86867 0.93654 0.96713 0.94025 0.92372 0.95675 0.91686 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 8.22 71.98 0.59 -2.74 16 2 C 0.13 2.15 3.27 45.10 0.15 2.30 16 3 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.13 -1.09 5.14 30.74 0.16 -0.93 16 5 C -0.12 -0.79 5.96 30.78 0.18 -0.61 16 6 C -0.04 -0.41 6.33 30.11 0.19 -0.22 16 7 C 0.23 4.68 7.63 138.30 1.06 5.73 16 8 N -0.52 -13.16 11.20 -186.67 -2.09 -15.25 16 9 C 0.03 0.74 11.39 84.11 0.96 1.70 16 10 C -0.10 -2.51 6.58 40.14 0.26 -2.24 16 11 C 0.59 15.77 7.11 86.47 0.62 16.38 16 12 O -0.56 -17.38 13.09 -4.30 -0.06 -17.44 16 13 N -0.70 -16.89 5.52 -470.73 -2.60 -19.49 16 14 C 0.17 4.56 5.66 85.63 0.48 5.05 16 15 C -0.14 -4.30 5.23 -15.14 -0.08 -4.38 16 16 C -0.14 -5.10 9.47 27.10 0.26 -4.84 16 17 C 0.21 9.91 5.16 85.42 0.44 10.35 16 18 N -0.61 -30.59 2.97 -703.40 -2.09 -32.68 16 19 C -0.26 -14.47 9.62 84.03 0.81 -13.66 16 20 H 0.06 3.42 7.85 -2.91 -0.02 3.40 16 21 C -0.05 -2.57 5.07 84.86 0.43 -2.14 16 22 N -0.94 -55.19 11.52 21.65 0.25 -54.94 16 23 Si 0.97 44.80 29.57 68.60 2.03 46.83 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 C 0.14 5.52 6.58 86.25 0.57 6.08 16 28 C -0.08 -2.66 5.95 29.65 0.18 -2.49 16 29 N -0.42 -9.15 2.97 -478.90 -1.42 -10.57 16 30 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 31 H 0.09 1.26 7.94 -2.39 -0.02 1.24 16 32 H 0.08 2.05 4.85 -2.56 -0.01 2.04 16 33 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 34 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 37 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.19 3.71 7.90 -2.91 -0.02 3.69 16 40 H 0.41 8.93 7.89 -92.71 -0.73 8.19 16 41 H 0.07 1.85 7.79 -2.39 -0.02 1.83 16 42 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 43 H 0.11 3.66 7.74 -2.91 -0.02 3.64 16 44 H 0.05 2.44 7.01 -2.38 -0.02 2.42 16 45 H 0.02 0.79 8.12 -2.39 -0.02 0.77 16 46 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 47 H 0.06 2.29 7.96 -2.38 -0.02 2.27 16 48 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -71.65 393.39 1.49 -70.17 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.21 Total: 20.02 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 7.25 Total: 13.35 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -7.95 Total: -132.92 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.06 Total: -17.44 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.65 1.49 -70.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000716743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.948 kcal (2) G-P(sol) polarization free energy of solvation -71.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds