Wall clock time and date at job start Wed Apr 1 2020 02:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.38593 * 2 1 4 4 C 1.53033 * 109.42614 * 240.13097 * 2 1 3 5 5 C 1.53373 * 109.74211 * 168.19669 * 4 2 1 6 6 C 1.50938 * 108.20850 * 50.64657 * 5 4 2 7 7 N 1.30131 * 128.28608 * 163.16549 * 6 5 4 8 8 N 1.40317 * 108.12238 * 180.30675 * 7 6 5 9 9 H 0.96997 * 126.00501 * 179.97438 * 8 7 6 10 10 C 1.35195 * 107.99440 * 359.95961 * 8 7 6 11 11 C 1.34572 * 107.61667 * 359.95966 * 10 8 7 12 12 C 1.50883 * 128.32501 * 180.13161 * 11 10 8 13 13 H 1.08999 * 109.72241 * 283.16317 * 12 11 10 14 14 C 1.50702 * 109.72011 * 43.76675 * 12 11 10 15 15 O 1.21286 * 120.00032 * 119.99384 * 14 12 11 16 16 N 1.34779 * 120.00089 * 300.00343 * 14 12 11 17 17 C 1.46495 * 119.99846 * 179.97438 * 16 14 12 18 18 C 1.50698 * 109.46948 * 179.97438 * 17 16 14 19 19 C 1.29455 * 117.69711 * 94.99967 * 18 17 16 20 20 C 1.50318 * 123.65583 * 180.85472 * 19 18 17 21 21 N 1.47013 * 109.16769 * 349.03286 * 20 19 18 22 22 C 1.36933 * 121.38622 * 222.92454 * 21 20 19 23 23 H 1.08003 * 120.00337 * 156.01302 * 22 21 20 24 24 C 1.38811 * 120.00091 * 336.01076 * 22 21 20 25 25 N 1.31613 * 119.99927 * 344.51523 * 24 22 21 26 26 Si 1.86800 * 120.00052 * 164.50822 * 24 22 21 27 27 H 1.48504 * 109.46540 * 90.00612 * 26 24 22 28 28 H 1.48502 * 109.47216 * 210.00171 * 26 24 22 29 29 H 1.48498 * 109.47260 * 330.00435 * 26 24 22 30 30 C 1.47340 * 117.23874 * 42.95295 * 21 20 19 31 31 C 1.49975 * 117.69611 * 275.02273 * 18 17 16 32 32 H 1.09001 * 109.46924 * 300.12402 * 1 2 3 33 33 H 1.09002 * 109.47418 * 60.11986 * 1 2 3 34 34 H 1.09001 * 109.47349 * 180.11738 * 1 2 3 35 35 H 1.08994 * 109.42396 * 48.11284 * 4 2 1 36 36 H 1.08998 * 109.42741 * 288.27775 * 4 2 1 37 37 H 1.09002 * 109.71627 * 290.96567 * 5 4 2 38 38 H 1.09001 * 109.71411 * 170.32879 * 5 4 2 39 39 H 1.08001 * 126.19591 * 179.97438 * 10 8 7 40 40 H 0.97002 * 119.99592 * 359.97438 * 16 14 12 41 41 H 1.09003 * 109.47104 * 60.00306 * 17 16 14 42 42 H 1.08992 * 109.47257 * 299.99755 * 17 16 14 43 43 H 1.08000 * 118.17254 * 0.57870 * 19 18 17 44 44 H 1.09002 * 109.51892 * 108.93183 * 20 19 18 45 45 H 1.08994 * 109.52594 * 229.11943 * 20 19 18 46 46 H 0.97006 * 120.00424 * 179.97438 * 25 24 22 47 47 H 1.08997 * 109.77894 * 178.61019 * 30 21 20 48 48 H 1.09003 * 109.82164 * 57.82911 * 30 21 20 49 49 H 1.09002 * 109.31403 * 281.28707 * 31 18 17 50 50 H 1.09002 * 109.31147 * 40.71754 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0390 -0.7187 -1.2515 5 6 3.5439 -0.4720 -1.4147 6 6 4.2195 -0.7934 -0.1038 7 7 5.4827 -1.0112 0.1202 8 7 5.6440 -1.2769 1.4885 9 1 6.4814 -1.4747 1.9361 10 6 4.4271 -1.2083 2.0735 11 6 3.5306 -0.9103 1.1151 12 6 2.0403 -0.7206 1.2542 13 1 1.5529 -1.6913 1.3454 14 6 1.7455 0.1127 2.4748 15 8 1.1618 1.1698 2.3608 16 7 2.1306 -0.3165 3.6929 17 6 1.8445 0.4939 4.8793 18 6 2.3749 -0.2048 6.1047 19 6 3.5531 0.1287 6.5249 20 6 4.2184 -0.4941 7.7203 21 7 3.2355 -1.3081 8.4502 22 6 3.1611 -1.2804 9.8172 23 1 2.2402 -1.5490 10.3135 24 6 4.2692 -0.9072 10.5652 25 7 5.4603 -0.8757 10.0062 26 14 4.0699 -0.4494 12.3653 27 1 4.2227 -1.6648 13.2048 28 1 5.1068 0.5452 12.7409 29 1 2.7220 0.1352 12.5811 30 6 2.3343 -2.1555 7.6499 31 6 1.5009 -1.2379 6.7512 32 1 -0.3633 0.5158 0.8889 33 1 -0.3634 0.5120 -0.8911 34 1 -0.3634 -1.0277 0.0021 35 1 1.5123 -0.3391 -2.1270 36 1 1.8556 -1.7888 -1.1549 37 1 3.7195 0.5725 -1.6725 38 1 3.9392 -1.1164 -2.1999 39 1 4.2130 -1.3641 3.1205 40 1 2.5973 -1.1620 3.7840 41 1 0.7672 0.6287 4.9761 42 1 2.3249 1.4671 4.7791 43 1 4.0896 0.8942 5.9839 44 1 5.0420 -1.1271 7.3900 45 1 4.5999 0.2897 8.3745 46 1 6.2347 -0.6145 10.5288 47 1 1.6769 -2.7212 8.3101 48 1 2.9192 -2.8407 7.0362 49 1 0.7387 -0.7409 7.3513 50 1 1.0154 -1.8340 5.9784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000963126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:33 Heat of formation + Delta-G solvation = 64.298562 kcal Electronic energy + Delta-G solvation = -30570.703991 eV Core-core repulsion = 26599.675546 eV Total energy + Delta-G solvation = -3971.028445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.89082 -39.77128 -37.98372 -36.93958 -34.97106 -33.20093 -32.68126 -31.47198 -30.71220 -29.82806 -29.76959 -27.41080 -26.41531 -24.46265 -23.98875 -22.82854 -21.82034 -21.07054 -21.01181 -20.46985 -19.08659 -17.99061 -17.74876 -17.20053 -15.97786 -15.76855 -15.32876 -15.31806 -15.02402 -14.89900 -14.39760 -14.30442 -13.95960 -13.84106 -13.64950 -13.44128 -13.24394 -13.04963 -12.94342 -12.46154 -12.25744 -12.21533 -12.03645 -11.76716 -11.63151 -11.41479 -11.30030 -11.11243 -10.97089 -10.79825 -10.77744 -10.69856 -10.46670 -10.37629 -9.89649 -9.83276 -9.65292 -9.61003 -8.97010 -8.75783 -8.66007 -8.13086 -6.81954 -5.86710 -3.25352 1.66931 2.35284 2.55299 2.60150 2.79595 3.33602 3.40935 3.43227 3.53122 4.14535 4.43889 4.44700 4.51645 4.63958 4.74853 5.00773 5.03433 5.13916 5.19915 5.22957 5.29027 5.32660 5.34928 5.44449 5.51859 5.54393 5.63325 5.69662 5.76281 5.77386 5.82090 5.89613 5.95603 6.00714 6.10195 6.22546 6.24080 6.26175 6.37645 6.40557 6.50729 6.66288 6.78794 7.05590 7.07854 7.17609 7.24519 7.44491 7.55289 7.65742 7.75024 8.25760 8.31037 9.12621 9.75344 10.32809 11.23832 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.002489 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.245295 B =11246.940492 C =12234.220300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 H 0.082 0.918 4 C -0.111 4.111 5 C -0.040 4.040 6 C 0.091 3.909 7 N -0.288 5.288 8 N -0.478 5.478 9 H 0.442 0.558 10 C 0.073 3.927 11 C -0.236 4.236 12 C -0.021 4.021 13 H 0.102 0.898 14 C 0.521 3.479 15 O -0.538 6.538 16 N -0.723 5.723 17 C 0.156 3.844 18 C -0.165 4.165 19 C -0.127 4.127 20 C 0.195 3.805 21 N -0.595 5.595 22 C -0.246 4.246 23 H 0.069 0.931 24 C -0.001 4.001 25 N -0.910 5.910 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.280 1.280 30 C 0.144 3.856 31 C -0.091 4.091 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.176 0.824 40 H 0.396 0.604 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.093 0.907 46 H 0.254 0.746 47 H 0.057 0.943 48 H 0.022 0.978 49 H 0.065 0.935 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -1.598 -21.886 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.088 4.088 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.078 4.078 7 N -0.111 5.111 8 N -0.186 5.186 9 H 0.287 0.713 10 C -0.074 4.074 11 C -0.248 4.248 12 C -0.044 4.044 13 H 0.119 0.881 14 C 0.306 3.694 15 O -0.415 6.415 16 N -0.375 5.375 17 C 0.034 3.966 18 C -0.166 4.166 19 C -0.148 4.148 20 C 0.070 3.930 21 N -0.318 5.318 22 C -0.376 4.376 23 H 0.086 0.914 24 C -0.199 4.199 25 N -0.555 5.555 26 Si 0.734 3.266 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.205 1.205 30 C 0.017 3.983 31 C -0.130 4.130 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.192 0.808 40 H 0.232 0.768 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.058 0.942 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.040 0.960 49 H 0.083 0.917 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.297 -0.854 -22.343 22.769 hybrid contribution 0.050 -0.185 1.874 1.884 sum -4.247 -1.039 -20.469 20.931 Atomic orbital electron populations 1.21905 0.94378 1.01521 1.02956 1.20949 0.96111 0.99966 0.91759 0.89969 1.21666 0.93969 1.01241 0.98001 1.20165 0.94221 1.02472 0.91083 1.22305 0.90480 0.98549 0.96493 1.77021 1.18081 1.23050 0.92905 1.46335 1.08699 1.57336 1.06188 0.71301 1.22202 0.85653 1.00298 0.99215 1.19637 0.95420 1.16620 0.93144 1.19790 0.91358 0.99522 0.93693 0.88061 1.20530 0.78174 0.86378 0.84272 1.90668 1.41370 1.23242 1.86217 1.46361 1.59908 1.24828 1.06437 1.20457 1.00488 0.93390 0.82298 1.20525 0.97072 1.01728 0.97234 1.23289 0.95462 0.97322 0.98699 1.19747 0.89904 0.94514 0.88878 1.44121 1.38970 1.46506 1.02195 1.19171 0.95525 1.41820 0.81061 0.91355 1.24982 0.94832 1.02047 0.98011 1.69996 0.97637 1.51875 1.36031 0.86261 0.77319 0.78103 0.84898 1.21403 1.21545 1.20502 1.20949 0.92525 0.91685 0.93095 1.20767 0.97709 0.96393 0.98119 0.91009 0.92623 0.93113 0.90522 0.91346 0.89686 0.89850 0.80752 0.76815 0.91541 0.91719 0.88863 0.94246 0.88891 0.93594 0.92429 0.96026 0.91678 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.95 37.16 0.33 -1.00 16 2 C -0.07 -0.64 1.77 -90.40 -0.16 -0.80 16 3 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 4 C -0.11 -0.79 5.18 -26.52 -0.14 -0.92 16 5 C -0.04 -0.32 6.31 -27.57 -0.17 -0.50 16 6 C 0.09 0.99 7.10 -82.35 -0.58 0.41 16 7 N -0.29 -3.47 12.68 33.75 0.43 -3.04 16 8 N -0.48 -4.83 7.37 30.35 0.22 -4.61 16 9 H 0.44 3.30 8.96 -182.44 -1.64 1.67 16 10 C 0.07 0.74 10.99 -17.37 -0.19 0.55 16 11 C -0.24 -2.51 5.41 -104.98 -0.57 -3.08 16 12 C -0.02 -0.21 2.33 -92.63 -0.22 -0.43 16 13 H 0.10 0.87 8.13 -51.93 -0.42 0.44 16 14 C 0.52 6.60 6.85 -10.98 -0.08 6.52 16 15 O -0.54 -8.56 14.25 5.55 0.08 -8.48 16 16 N -0.72 -8.64 4.96 -61.48 -0.30 -8.95 16 17 C 0.16 2.20 5.66 -5.20 -0.03 2.17 16 18 C -0.16 -2.63 5.22 -100.99 -0.53 -3.16 16 19 C -0.13 -2.26 9.47 -35.78 -0.34 -2.60 16 20 C 0.19 4.37 5.23 -5.10 -0.03 4.34 16 21 N -0.59 -14.22 3.01 -173.67 -0.52 -14.74 16 22 C -0.25 -6.56 9.71 -15.06 -0.15 -6.70 16 23 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 24 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 25 N -0.91 -25.50 11.08 55.49 0.61 -24.88 16 26 Si 0.90 21.29 29.58 -169.99 -5.03 16.27 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 30 C 0.14 2.80 6.58 -3.53 -0.02 2.78 16 31 C -0.09 -1.48 5.95 -28.18 -0.17 -1.65 16 32 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.18 1.51 5.93 -52.49 -0.31 1.20 16 40 H 0.40 4.08 6.14 -40.82 -0.25 3.83 16 41 H 0.07 0.97 8.11 -51.93 -0.42 0.54 16 42 H 0.06 0.97 7.78 -51.93 -0.40 0.57 16 43 H 0.09 1.50 7.74 -52.49 -0.41 1.09 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 2.37 6.41 -51.93 -0.33 2.04 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -31.87 390.75 -10.84 -42.72 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -9.10 Total: 4.01 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -3.12 Total: -4.19 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.44 Total: -56.22 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.87 -10.84 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000963126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.014 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds