Wall clock time and date at job start Wed Apr 1 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.38593 * 2 1 4 4 C 1.53033 * 109.42614 * 240.13097 * 2 1 3 5 5 C 1.53373 * 109.74211 * 168.19669 * 4 2 1 6 6 C 1.50938 * 108.20850 * 50.64657 * 5 4 2 7 7 N 1.30131 * 128.28608 * 163.16549 * 6 5 4 8 8 N 1.40317 * 108.12238 * 180.30675 * 7 6 5 9 9 H 0.96997 * 126.00501 * 179.97438 * 8 7 6 10 10 C 1.35195 * 107.99440 * 359.95961 * 8 7 6 11 11 C 1.34572 * 107.61667 * 359.95966 * 10 8 7 12 12 C 1.50883 * 128.32501 * 180.13161 * 11 10 8 13 13 H 1.08999 * 109.72241 * 283.16317 * 12 11 10 14 14 C 1.50702 * 109.72011 * 43.76675 * 12 11 10 15 15 O 1.21286 * 120.00032 * 119.99384 * 14 12 11 16 16 N 1.34779 * 120.00089 * 300.00343 * 14 12 11 17 17 C 1.46495 * 119.99846 * 179.97438 * 16 14 12 18 18 C 1.50698 * 109.46948 * 179.97438 * 17 16 14 19 19 C 1.29455 * 117.69711 * 94.99967 * 18 17 16 20 20 C 1.50318 * 123.65583 * 180.85472 * 19 18 17 21 21 N 1.47013 * 109.16769 * 349.03286 * 20 19 18 22 22 C 1.36933 * 121.38622 * 222.92454 * 21 20 19 23 23 H 1.08003 * 120.00337 * 156.01302 * 22 21 20 24 24 C 1.38811 * 120.00091 * 336.01076 * 22 21 20 25 25 N 1.31613 * 119.99927 * 344.51523 * 24 22 21 26 26 Si 1.86800 * 120.00052 * 164.50822 * 24 22 21 27 27 H 1.48504 * 109.46540 * 90.00612 * 26 24 22 28 28 H 1.48502 * 109.47216 * 210.00171 * 26 24 22 29 29 H 1.48498 * 109.47260 * 330.00435 * 26 24 22 30 30 C 1.47340 * 117.23874 * 42.95295 * 21 20 19 31 31 C 1.49975 * 117.69611 * 275.02273 * 18 17 16 32 32 H 1.09001 * 109.46924 * 300.12402 * 1 2 3 33 33 H 1.09002 * 109.47418 * 60.11986 * 1 2 3 34 34 H 1.09001 * 109.47349 * 180.11738 * 1 2 3 35 35 H 1.08994 * 109.42396 * 48.11284 * 4 2 1 36 36 H 1.08998 * 109.42741 * 288.27775 * 4 2 1 37 37 H 1.09002 * 109.71627 * 290.96567 * 5 4 2 38 38 H 1.09001 * 109.71411 * 170.32879 * 5 4 2 39 39 H 1.08001 * 126.19591 * 179.97438 * 10 8 7 40 40 H 0.97002 * 119.99592 * 359.97438 * 16 14 12 41 41 H 1.09003 * 109.47104 * 60.00306 * 17 16 14 42 42 H 1.08992 * 109.47257 * 299.99755 * 17 16 14 43 43 H 1.08000 * 118.17254 * 0.57870 * 19 18 17 44 44 H 1.09002 * 109.51892 * 108.93183 * 20 19 18 45 45 H 1.08994 * 109.52594 * 229.11943 * 20 19 18 46 46 H 0.97006 * 120.00424 * 179.97438 * 25 24 22 47 47 H 1.08997 * 109.77894 * 178.61019 * 30 21 20 48 48 H 1.09003 * 109.82164 * 57.82911 * 30 21 20 49 49 H 1.09002 * 109.31403 * 281.28707 * 31 18 17 50 50 H 1.09002 * 109.31147 * 40.71754 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0390 -0.7187 -1.2515 5 6 3.5439 -0.4720 -1.4147 6 6 4.2195 -0.7934 -0.1038 7 7 5.4827 -1.0112 0.1202 8 7 5.6440 -1.2769 1.4885 9 1 6.4814 -1.4747 1.9361 10 6 4.4271 -1.2083 2.0735 11 6 3.5306 -0.9103 1.1151 12 6 2.0403 -0.7206 1.2542 13 1 1.5529 -1.6913 1.3454 14 6 1.7455 0.1127 2.4748 15 8 1.1618 1.1698 2.3608 16 7 2.1306 -0.3165 3.6929 17 6 1.8445 0.4939 4.8793 18 6 2.3749 -0.2048 6.1047 19 6 3.5531 0.1287 6.5249 20 6 4.2184 -0.4941 7.7203 21 7 3.2355 -1.3081 8.4502 22 6 3.1611 -1.2804 9.8172 23 1 2.2402 -1.5490 10.3135 24 6 4.2692 -0.9072 10.5652 25 7 5.4603 -0.8757 10.0062 26 14 4.0699 -0.4494 12.3653 27 1 4.2227 -1.6648 13.2048 28 1 5.1068 0.5452 12.7409 29 1 2.7220 0.1352 12.5811 30 6 2.3343 -2.1555 7.6499 31 6 1.5009 -1.2379 6.7512 32 1 -0.3633 0.5158 0.8889 33 1 -0.3634 0.5120 -0.8911 34 1 -0.3634 -1.0277 0.0021 35 1 1.5123 -0.3391 -2.1270 36 1 1.8556 -1.7888 -1.1549 37 1 3.7195 0.5725 -1.6725 38 1 3.9392 -1.1164 -2.1999 39 1 4.2130 -1.3641 3.1205 40 1 2.5973 -1.1620 3.7840 41 1 0.7672 0.6287 4.9761 42 1 2.3249 1.4671 4.7791 43 1 4.0896 0.8942 5.9839 44 1 5.0420 -1.1271 7.3900 45 1 4.5999 0.2897 8.3745 46 1 6.2347 -0.6145 10.5288 47 1 1.6769 -2.7212 8.3101 48 1 2.9192 -2.8407 7.0362 49 1 0.7387 -0.7409 7.3513 50 1 1.0154 -1.8340 5.9784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000963126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:32 Heat of formation + Delta-G solvation = 44.942086 kcal Electronic energy + Delta-G solvation = -30571.543351 eV Core-core repulsion = 26599.675546 eV Total energy + Delta-G solvation = -3971.867804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.68188 -40.78711 -39.41436 -37.78520 -36.34511 -34.63091 -33.60184 -32.74364 -31.90063 -31.37737 -30.55535 -28.71220 -27.50898 -25.85417 -24.85142 -24.36903 -23.05538 -22.33076 -21.78592 -21.41663 -19.80574 -19.49727 -18.78411 -18.28001 -17.31790 -17.06840 -16.87863 -16.31607 -16.06272 -15.73687 -15.68691 -15.38850 -15.21471 -15.13018 -14.94104 -14.51491 -14.34118 -14.14360 -13.84958 -13.70734 -13.56213 -13.26873 -13.17788 -12.91627 -12.82300 -12.78081 -12.58583 -12.36956 -12.24828 -12.11013 -12.04293 -11.84106 -11.70985 -11.49825 -11.45548 -11.26124 -10.77635 -10.67881 -10.39611 -10.04457 -9.66910 -9.44603 -8.74995 -7.89623 -5.29923 0.87947 1.18014 1.45623 1.47862 1.53992 1.56578 1.78404 1.95534 2.49288 2.50436 3.28150 3.41806 3.62189 3.73549 3.75603 3.85882 3.94337 3.97407 4.07488 4.31104 4.37342 4.44783 4.50831 4.53965 4.56969 4.64628 4.68485 4.74478 4.78273 4.85066 4.88277 4.93011 4.99853 5.04288 5.11524 5.15020 5.19727 5.21978 5.31868 5.36914 5.42382 5.48369 5.55438 5.58874 5.61339 5.65172 5.77394 6.16614 6.33333 6.36038 6.57232 6.66891 7.13278 7.27478 7.83669 8.36501 9.18769 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.002489 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.245295 B =11246.940492 C =12234.220300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 H 0.058 0.942 4 C -0.102 4.102 5 C -0.042 4.042 6 C 0.083 3.917 7 N -0.318 5.318 8 N -0.477 5.477 9 H 0.451 0.549 10 C 0.072 3.928 11 C -0.248 4.248 12 C -0.014 4.014 13 H 0.123 0.877 14 C 0.521 3.479 15 O -0.571 6.571 16 N -0.714 5.714 17 C 0.167 3.833 18 C -0.136 4.136 19 C -0.143 4.143 20 C 0.206 3.794 21 N -0.615 5.615 22 C -0.256 4.256 23 H 0.069 0.931 24 C -0.053 4.053 25 N -0.938 5.938 26 Si 0.965 3.035 27 H -0.284 1.284 28 H -0.294 1.294 29 H -0.273 1.273 30 C 0.139 3.861 31 C -0.085 4.085 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.188 0.812 40 H 0.407 0.593 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.110 0.890 44 H 0.016 0.984 45 H 0.054 0.946 46 H 0.249 0.751 47 H 0.058 0.942 48 H 0.030 0.970 49 H 0.062 0.938 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 -2.393 -23.539 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.140 4.140 5 C -0.081 4.081 6 C -0.086 4.086 7 N -0.141 5.141 8 N -0.186 5.186 9 H 0.297 0.703 10 C -0.075 4.075 11 C -0.260 4.260 12 C -0.036 4.036 13 H 0.141 0.859 14 C 0.308 3.692 15 O -0.450 6.450 16 N -0.367 5.367 17 C 0.044 3.956 18 C -0.137 4.137 19 C -0.163 4.163 20 C 0.081 3.919 21 N -0.339 5.339 22 C -0.386 4.386 23 H 0.087 0.913 24 C -0.248 4.248 25 N -0.585 5.585 26 Si 0.793 3.207 27 H -0.211 1.211 28 H -0.221 1.221 29 H -0.198 1.198 30 C 0.014 3.986 31 C -0.123 4.123 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.205 0.795 40 H 0.244 0.756 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.128 0.872 44 H 0.033 0.967 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.076 0.924 48 H 0.048 0.952 49 H 0.080 0.920 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.043 -1.680 -24.015 24.820 hybrid contribution 0.547 0.026 2.364 2.426 sum -5.496 -1.654 -21.651 22.399 Atomic orbital electron populations 1.21853 0.93969 1.02305 1.02206 1.20935 0.96387 0.98857 0.92509 0.92361 1.21629 0.93212 1.01588 0.97528 1.20308 0.94714 1.02861 0.90201 1.22794 0.90249 0.97810 0.97716 1.76980 1.18950 1.24308 0.93880 1.46394 1.09272 1.57093 1.05844 0.70304 1.22448 0.85607 0.99731 0.99739 1.19774 0.95746 1.17139 0.93304 1.19810 0.91243 0.99960 0.92580 0.85930 1.21003 0.77244 0.86070 0.84855 1.90664 1.42892 1.24815 1.86674 1.46202 1.59806 1.24969 1.05720 1.20208 1.00319 0.93056 0.82034 1.20612 0.95770 1.00287 0.96996 1.22920 0.96693 0.98918 0.97807 1.19383 0.89701 0.93124 0.89674 1.44401 1.39768 1.47767 1.01975 1.19490 0.95420 1.40941 0.82717 0.91288 1.25693 0.94704 1.02771 1.01652 1.70148 0.98081 1.53148 1.37130 0.85313 0.77164 0.77545 0.80674 1.21111 1.22058 1.19776 1.21144 0.92196 0.92044 0.93255 1.20707 0.97041 0.96167 0.98423 0.93672 0.91487 0.91486 0.88506 0.90349 0.89517 0.88542 0.79529 0.75564 0.91262 0.92447 0.87221 0.96665 0.92761 0.94180 0.92379 0.95183 0.91974 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.95 71.98 0.64 -1.64 16 2 C -0.07 -1.12 1.77 -10.65 -0.02 -1.14 16 3 H 0.06 1.25 7.77 -2.39 -0.02 1.24 16 4 C -0.10 -1.15 5.18 30.73 0.16 -0.99 16 5 C -0.04 -0.59 6.31 30.05 0.19 -0.40 16 6 C 0.08 1.69 7.10 43.43 0.31 1.99 16 7 N -0.32 -7.35 12.68 -47.14 -0.60 -7.95 16 8 N -0.48 -9.19 7.37 -57.88 -0.43 -9.62 16 9 H 0.45 6.45 8.96 -213.18 -1.91 4.54 16 10 C 0.07 1.34 10.99 83.33 0.92 2.26 16 11 C -0.25 -4.82 5.41 -20.10 -0.11 -4.92 16 12 C -0.01 -0.25 2.33 -12.10 -0.03 -0.28 16 13 H 0.12 1.68 8.13 -2.39 -0.02 1.66 16 14 C 0.52 12.23 6.85 87.66 0.60 12.83 16 15 O -0.57 -17.58 14.25 -3.05 -0.04 -17.63 16 16 N -0.71 -15.34 4.96 -466.80 -2.32 -17.65 16 17 C 0.17 4.33 5.66 85.63 0.48 4.82 16 18 C -0.14 -4.07 5.22 -15.14 -0.08 -4.15 16 19 C -0.14 -5.00 9.47 27.10 0.26 -4.75 16 20 C 0.21 9.50 5.23 85.42 0.45 9.95 16 21 N -0.62 -29.59 3.01 -703.37 -2.12 -31.71 16 22 C -0.26 -13.73 9.71 84.03 0.82 -12.91 16 23 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16 24 C -0.05 -2.93 5.01 84.86 0.43 -2.50 16 25 N -0.94 -54.20 11.08 21.65 0.24 -53.96 16 26 Si 0.96 44.39 29.58 68.60 2.03 46.42 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 28 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 29 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 30 C 0.14 5.21 6.58 86.25 0.57 5.78 16 31 C -0.08 -2.54 5.95 29.66 0.18 -2.36 16 32 H 0.04 0.96 6.36 -2.39 -0.02 0.95 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.74 8.09 -2.39 -0.02 0.72 16 36 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.19 2.85 5.93 -2.91 -0.02 2.83 16 40 H 0.41 7.18 6.14 -92.71 -0.57 6.61 16 41 H 0.07 1.83 8.11 -2.39 -0.02 1.81 16 42 H 0.06 1.62 7.78 -2.39 -0.02 1.61 16 43 H 0.11 3.46 7.74 -2.91 -0.02 3.44 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.05 2.89 6.41 -2.39 -0.02 2.88 16 46 H 0.25 14.02 8.31 -92.70 -0.77 13.24 16 47 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16 48 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -70.26 390.75 1.01 -69.25 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -1.51 Total: 21.26 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.75 Total: 1.60 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -5.22 Total: -120.90 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.04 Total: -17.63 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -70.26 1.01 -69.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000963126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.190 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds