Wall clock time and date at job start Wed Apr 1 2020 04:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28850 * 124.98031 * 2 1 4 4 C 1.32204 * 110.15119 * 179.97438 * 3 2 1 5 5 C 1.47712 * 126.67625 * 179.97438 * 4 3 2 6 6 O 1.21575 * 119.99856 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00016 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99696 * 180.02562 * 7 5 4 9 9 C 1.50709 * 109.46833 * 180.02562 * 8 7 5 10 10 C 1.29449 * 117.69537 * 94.99991 * 9 8 7 11 11 C 1.50325 * 123.64901 * 180.86107 * 10 9 8 12 12 N 1.47005 * 109.16543 * 349.01458 * 11 10 9 13 13 C 1.36938 * 121.37736 * 222.97026 * 12 11 10 14 14 H 1.08005 * 120.00057 * 155.97127 * 13 12 11 15 15 C 1.38803 * 120.00105 * 335.96875 * 13 12 11 16 16 N 1.31624 * 120.00096 * 344.52849 * 15 13 12 17 17 Si 1.86795 * 120.00177 * 164.52141 * 15 13 12 18 18 H 1.48499 * 109.47161 * 60.00004 * 17 15 13 19 19 H 1.48502 * 109.47345 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47201 * 300.00385 * 17 15 13 21 21 C 1.47341 * 117.24991 * 42.95352 * 12 11 10 22 22 C 1.49972 * 117.68599 * 274.73511 * 9 8 7 23 23 C 1.40495 * 106.64541 * 359.97438 * 4 3 2 24 24 C 1.34317 * 124.98115 * 180.02562 * 2 1 3 25 25 C 1.50639 * 128.91713 * 0.19105 * 24 2 1 26 26 C 1.53394 * 108.37420 * 163.24838 * 25 24 2 27 27 C 1.53108 * 109.62154 * 50.02777 * 26 25 24 28 28 C 1.50375 * 129.43312 * 180.13781 * 23 4 3 29 29 H 1.08993 * 109.47313 * 269.97126 * 1 2 3 30 30 H 1.09002 * 109.47095 * 29.97860 * 1 2 3 31 31 H 1.09004 * 109.47296 * 149.97243 * 1 2 3 32 32 H 0.96992 * 120.00197 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.46817 * 299.99359 * 8 7 5 34 34 H 1.08995 * 109.47769 * 59.99543 * 8 7 5 35 35 H 1.07999 * 118.17567 * 0.87235 * 10 9 8 36 36 H 1.08995 * 109.52304 * 108.92227 * 11 10 9 37 37 H 1.08999 * 109.52260 * 229.11446 * 11 10 9 38 38 H 0.96998 * 120.00319 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.78186 * 57.80134 * 21 12 11 40 40 H 1.09000 * 109.78299 * 178.62093 * 21 12 11 41 41 H 1.08999 * 109.31316 * 281.28737 * 22 9 8 42 42 H 1.08997 * 109.31788 * 40.72134 * 22 9 8 43 43 H 1.08999 * 109.64100 * 43.53983 * 25 24 2 44 44 H 1.08994 * 109.69308 * 282.98790 * 25 24 2 45 45 H 1.09005 * 109.44577 * 289.98580 * 26 25 24 46 46 H 1.09008 * 109.43841 * 170.06070 * 26 25 24 47 47 H 1.08999 * 109.46611 * 49.97053 * 27 26 25 48 48 H 1.08995 * 109.46595 * 169.95323 * 27 26 25 49 49 H 1.08995 * 109.70623 * 44.00587 * 28 23 4 50 50 H 1.09003 * 109.70335 * 283.39987 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2036 1.0557 0.0000 4 6 3.4816 0.7174 0.0006 5 6 4.6377 1.6368 0.0002 6 8 5.7688 1.1911 0.0003 7 7 4.4386 2.9698 -0.0002 8 6 5.5853 3.8816 -0.0011 9 6 5.0941 5.3063 -0.0009 10 6 4.9932 5.9077 1.1410 11 6 4.5012 7.3194 1.2983 12 7 4.4216 7.9532 -0.0257 13 6 4.8543 9.2364 -0.2292 14 1 5.1541 9.5550 -1.2166 15 6 4.9076 10.1276 0.8336 16 7 4.2710 9.8556 1.9531 17 14 5.8830 11.7127 0.6753 18 1 5.3356 12.5212 -0.4436 19 1 5.7820 12.4846 1.9400 20 1 7.3075 11.3925 0.4039 21 6 3.8574 7.1506 -1.1250 22 6 4.7623 5.9293 -1.3241 23 6 3.5262 -0.6869 0.0015 24 6 2.2350 -1.1005 -0.0005 25 6 1.8172 -2.5478 -0.0050 26 6 3.0235 -3.3980 -0.4233 27 6 4.2438 -3.0064 0.4144 28 6 4.7173 -1.6047 0.0053 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5143 32 1 3.5363 3.3253 -0.0007 33 1 6.1898 3.7059 0.8887 34 1 6.1892 3.7052 -0.8912 35 1 5.2787 5.3651 2.0301 36 1 3.5131 7.3117 1.7584 37 1 5.1931 7.8782 1.9285 38 1 4.3085 10.4782 2.6960 39 1 2.8486 6.8285 -0.8666 40 1 3.8334 7.7429 -2.0396 41 1 5.6836 6.2356 -1.8195 42 1 4.2468 5.1987 -1.9475 43 1 1.0026 -2.6917 -0.7148 44 1 1.4910 -2.8391 0.9933 45 1 3.2384 -3.2287 -1.4785 46 1 2.7971 -4.4523 -0.2638 47 1 3.9741 -3.0054 1.4705 48 1 5.0461 -3.7244 0.2452 49 1 5.4570 -1.2440 0.7199 50 1 5.1562 -1.6413 -0.9918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001181909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:01 Heat of formation + Delta-G solvation = 69.090097 kcal Electronic energy + Delta-G solvation = -29740.643052 eV Core-core repulsion = 25769.822384 eV Total energy + Delta-G solvation = -3970.820668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.02202 -39.32665 -37.66442 -37.24118 -34.85285 -34.00749 -32.79616 -30.88303 -30.62203 -30.06365 -29.68022 -28.00287 -26.52665 -24.40813 -23.95293 -22.81926 -22.47563 -22.15301 -21.00864 -20.04714 -19.19491 -17.78156 -17.47550 -16.75527 -16.53436 -15.75765 -15.56532 -15.14883 -15.03517 -14.78780 -14.23406 -14.13172 -13.98625 -13.85262 -13.69222 -13.59672 -13.42355 -13.21646 -13.07568 -12.84507 -12.81527 -12.27686 -12.19024 -11.98399 -11.53071 -11.31937 -11.26324 -11.14120 -10.97240 -10.88529 -10.81982 -10.71293 -10.37614 -10.30818 -9.99410 -9.80706 -9.56107 -9.30062 -8.86054 -8.71809 -8.65530 -8.01900 -6.72675 -5.77990 -3.16795 1.49282 1.92404 2.20560 2.66739 3.40327 3.45826 3.47410 3.47941 3.60894 4.08748 4.16085 4.47077 4.49698 4.51013 4.69336 4.73250 4.84023 4.93742 5.00720 5.10300 5.15878 5.22576 5.26252 5.34354 5.39246 5.44201 5.55953 5.62239 5.63266 5.78076 5.83437 5.88574 5.99650 6.05129 6.09486 6.12019 6.22024 6.33802 6.38271 6.51621 6.57362 6.62271 6.76782 6.90806 7.20674 7.29280 7.36469 7.57862 7.74892 7.84718 7.86280 8.34170 8.39857 9.21174 9.83992 10.42341 11.32443 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.002029 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.522175 B =13793.579287 C =14379.786475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.275 5.275 3 N -0.263 5.263 4 C -0.007 4.007 5 C 0.600 3.400 6 O -0.537 6.537 7 N -0.707 5.707 8 C 0.158 3.842 9 C -0.165 4.165 10 C -0.124 4.124 11 C 0.194 3.806 12 N -0.595 5.595 13 C -0.245 4.245 14 H 0.068 0.932 15 C -0.002 4.002 16 N -0.910 5.910 17 Si 0.906 3.094 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.144 3.856 22 C -0.090 4.090 23 C -0.144 4.144 24 C 0.003 3.997 25 C -0.044 4.044 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.042 4.042 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.407 0.593 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.791 -28.004 -3.560 29.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.062 5.062 3 N -0.099 5.099 4 C -0.166 4.166 5 C 0.384 3.616 6 O -0.413 6.413 7 N -0.358 5.358 8 C 0.035 3.965 9 C -0.166 4.166 10 C -0.145 4.145 11 C 0.069 3.931 12 N -0.319 5.319 13 C -0.375 4.375 14 H 0.086 0.914 15 C -0.200 4.200 16 N -0.556 5.556 17 Si 0.735 3.265 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.211 1.211 21 C 0.017 3.983 22 C -0.129 4.129 23 C -0.154 4.154 24 C -0.122 4.122 25 C -0.083 4.083 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.080 4.080 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.242 0.758 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.822 -27.218 -3.417 28.525 hybrid contribution 0.347 0.457 0.088 0.581 sum -7.475 -26.761 -3.328 27.984 Atomic orbital electron populations 1.22163 0.73383 1.05414 1.04519 1.45017 1.07497 1.02710 1.50991 1.73859 1.02693 1.13181 1.20170 1.21614 0.90865 0.93575 1.10527 1.16902 0.86474 0.81568 0.76613 1.90764 1.22617 1.77033 1.50897 1.46057 1.11156 1.04975 1.73611 1.20498 0.87381 0.86646 1.01951 1.20486 1.06188 0.93687 0.96245 1.23279 0.95602 0.99508 0.96123 1.19755 0.99086 0.86023 0.88187 1.44126 1.71507 1.11496 1.04721 1.19142 1.36336 0.86484 0.95504 0.91411 1.24991 0.99774 0.97810 0.97413 1.70002 1.43279 1.37320 1.04951 0.86315 0.80261 0.83078 0.76798 1.20949 1.21654 1.21067 1.20992 0.93607 0.91227 0.92427 1.20786 1.00556 0.97935 0.93617 1.19873 0.94578 0.92442 1.08516 1.21062 0.90732 0.91152 1.09287 1.20178 0.98885 0.86879 1.02363 1.21563 0.94164 0.98796 1.00695 1.21675 0.97510 0.96735 0.99941 1.19976 0.93831 0.91532 1.02620 0.89627 0.88297 0.88830 0.75765 0.91494 0.91418 0.88765 0.94129 0.88894 0.93572 0.95854 0.92493 0.91696 0.92888 0.90543 0.90067 0.91319 0.90952 0.91741 0.91178 0.89783 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.17 59.84 0.67 1.12 16 2 N -0.28 -2.81 3.69 -63.99 -0.24 -3.04 16 3 N -0.26 -3.52 11.71 33.28 0.39 -3.13 16 4 C -0.01 -0.10 7.12 -82.99 -0.59 -0.69 16 5 C 0.60 9.71 7.82 -12.39 -0.10 9.62 16 6 O -0.54 -9.80 15.81 5.30 0.08 -9.72 16 7 N -0.71 -10.91 5.55 -62.47 -0.35 -11.26 16 8 C 0.16 2.55 5.66 -5.19 -0.03 2.52 16 9 C -0.17 -2.98 5.22 -100.98 -0.53 -3.50 16 10 C -0.12 -2.45 9.47 -35.78 -0.34 -2.79 16 11 C 0.19 4.68 5.23 -5.10 -0.03 4.65 16 12 N -0.60 -15.07 3.01 -173.56 -0.52 -15.59 16 13 C -0.25 -6.77 9.71 -15.06 -0.15 -6.92 16 14 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 15 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 16 N -0.91 -26.38 11.08 55.49 0.61 -25.77 16 17 Si 0.91 21.89 29.58 -169.99 -5.03 16.87 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.14 3.04 6.59 -3.43 -0.02 3.01 16 22 C -0.09 -1.63 5.95 -28.08 -0.17 -1.79 16 23 C -0.14 -1.79 5.99 -104.88 -0.63 -2.42 16 24 C 0.00 0.03 6.71 -82.48 -0.55 -0.52 16 25 C -0.04 -0.26 5.89 -27.71 -0.16 -0.43 16 26 C -0.11 -0.66 5.89 -26.47 -0.16 -0.82 16 27 C -0.12 -0.88 5.91 -26.41 -0.16 -1.04 16 28 C -0.04 -0.44 5.54 -27.78 -0.15 -0.60 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.24 7.52 -51.93 -0.39 -0.15 16 32 H 0.41 6.06 8.20 -40.82 -0.33 5.72 16 33 H 0.07 1.10 7.78 -51.93 -0.40 0.69 16 34 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 35 H 0.09 1.69 7.73 -52.49 -0.41 1.28 16 36 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 2.48 6.41 -51.93 -0.33 2.15 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.31 7.73 -51.93 -0.40 -0.09 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 46 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16 47 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -33.44 399.58 -10.32 -43.76 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.12 Total: 2.60 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.18 Total: -0.74 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.10 Total: -58.78 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.44 -10.32 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001181909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.852 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds