Wall clock time and date at job start Wed Apr 1 2020 04:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28850 * 124.98031 * 2 1 4 4 C 1.32204 * 110.15119 * 179.97438 * 3 2 1 5 5 C 1.47712 * 126.67625 * 179.97438 * 4 3 2 6 6 O 1.21575 * 119.99856 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00016 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99696 * 180.02562 * 7 5 4 9 9 C 1.50709 * 109.46833 * 180.02562 * 8 7 5 10 10 C 1.29449 * 117.69537 * 94.99991 * 9 8 7 11 11 C 1.50325 * 123.64901 * 180.86107 * 10 9 8 12 12 N 1.47005 * 109.16543 * 349.01458 * 11 10 9 13 13 C 1.36938 * 121.37736 * 222.97026 * 12 11 10 14 14 H 1.08005 * 120.00057 * 155.97127 * 13 12 11 15 15 C 1.38803 * 120.00105 * 335.96875 * 13 12 11 16 16 N 1.31624 * 120.00096 * 344.52849 * 15 13 12 17 17 Si 1.86795 * 120.00177 * 164.52141 * 15 13 12 18 18 H 1.48499 * 109.47161 * 60.00004 * 17 15 13 19 19 H 1.48502 * 109.47345 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47201 * 300.00385 * 17 15 13 21 21 C 1.47341 * 117.24991 * 42.95352 * 12 11 10 22 22 C 1.49972 * 117.68599 * 274.73511 * 9 8 7 23 23 C 1.40495 * 106.64541 * 359.97438 * 4 3 2 24 24 C 1.34317 * 124.98115 * 180.02562 * 2 1 3 25 25 C 1.50639 * 128.91713 * 0.19105 * 24 2 1 26 26 C 1.53394 * 108.37420 * 163.24838 * 25 24 2 27 27 C 1.53108 * 109.62154 * 50.02777 * 26 25 24 28 28 C 1.50375 * 129.43312 * 180.13781 * 23 4 3 29 29 H 1.08993 * 109.47313 * 269.97126 * 1 2 3 30 30 H 1.09002 * 109.47095 * 29.97860 * 1 2 3 31 31 H 1.09004 * 109.47296 * 149.97243 * 1 2 3 32 32 H 0.96992 * 120.00197 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.46817 * 299.99359 * 8 7 5 34 34 H 1.08995 * 109.47769 * 59.99543 * 8 7 5 35 35 H 1.07999 * 118.17567 * 0.87235 * 10 9 8 36 36 H 1.08995 * 109.52304 * 108.92227 * 11 10 9 37 37 H 1.08999 * 109.52260 * 229.11446 * 11 10 9 38 38 H 0.96998 * 120.00319 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.78186 * 57.80134 * 21 12 11 40 40 H 1.09000 * 109.78299 * 178.62093 * 21 12 11 41 41 H 1.08999 * 109.31316 * 281.28737 * 22 9 8 42 42 H 1.08997 * 109.31788 * 40.72134 * 22 9 8 43 43 H 1.08999 * 109.64100 * 43.53983 * 25 24 2 44 44 H 1.08994 * 109.69308 * 282.98790 * 25 24 2 45 45 H 1.09005 * 109.44577 * 289.98580 * 26 25 24 46 46 H 1.09008 * 109.43841 * 170.06070 * 26 25 24 47 47 H 1.08999 * 109.46611 * 49.97053 * 27 26 25 48 48 H 1.08995 * 109.46595 * 169.95323 * 27 26 25 49 49 H 1.08995 * 109.70623 * 44.00587 * 28 23 4 50 50 H 1.09003 * 109.70335 * 283.39987 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2036 1.0557 0.0000 4 6 3.4816 0.7174 0.0006 5 6 4.6377 1.6368 0.0002 6 8 5.7688 1.1911 0.0003 7 7 4.4386 2.9698 -0.0002 8 6 5.5853 3.8816 -0.0011 9 6 5.0941 5.3063 -0.0009 10 6 4.9932 5.9077 1.1410 11 6 4.5012 7.3194 1.2983 12 7 4.4216 7.9532 -0.0257 13 6 4.8543 9.2364 -0.2292 14 1 5.1541 9.5550 -1.2166 15 6 4.9076 10.1276 0.8336 16 7 4.2710 9.8556 1.9531 17 14 5.8830 11.7127 0.6753 18 1 5.3356 12.5212 -0.4436 19 1 5.7820 12.4846 1.9400 20 1 7.3075 11.3925 0.4039 21 6 3.8574 7.1506 -1.1250 22 6 4.7623 5.9293 -1.3241 23 6 3.5262 -0.6869 0.0015 24 6 2.2350 -1.1005 -0.0005 25 6 1.8172 -2.5478 -0.0050 26 6 3.0235 -3.3980 -0.4233 27 6 4.2438 -3.0064 0.4144 28 6 4.7173 -1.6047 0.0053 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5143 32 1 3.5363 3.3253 -0.0007 33 1 6.1898 3.7059 0.8887 34 1 6.1892 3.7052 -0.8912 35 1 5.2787 5.3651 2.0301 36 1 3.5131 7.3117 1.7584 37 1 5.1931 7.8782 1.9285 38 1 4.3085 10.4782 2.6960 39 1 2.8486 6.8285 -0.8666 40 1 3.8334 7.7429 -2.0396 41 1 5.6836 6.2356 -1.8195 42 1 4.2468 5.1987 -1.9475 43 1 1.0026 -2.6917 -0.7148 44 1 1.4910 -2.8391 0.9933 45 1 3.2384 -3.2287 -1.4785 46 1 2.7971 -4.4523 -0.2638 47 1 3.9741 -3.0054 1.4705 48 1 5.0461 -3.7244 0.2452 49 1 5.4570 -1.2440 0.7199 50 1 5.1562 -1.6413 -0.9918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001181909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:00 Heat of formation + Delta-G solvation = 48.401506 kcal Electronic energy + Delta-G solvation = -29741.540176 eV Core-core repulsion = 25769.822384 eV Total energy + Delta-G solvation = -3971.717793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.84772 -40.63252 -39.30593 -37.86136 -36.42858 -34.83468 -34.44946 -32.64084 -31.45956 -31.23962 -30.78418 -29.17600 -27.84376 -25.94580 -24.77487 -24.42493 -23.59736 -22.87405 -22.68942 -21.13644 -19.96394 -19.50482 -18.59087 -17.63080 -17.46857 -17.23688 -17.05055 -16.81066 -16.17313 -15.82024 -15.59948 -15.39771 -15.24712 -14.95679 -14.72028 -14.56212 -14.45581 -14.35388 -14.00651 -13.91134 -13.73365 -13.55982 -13.32430 -13.29033 -12.95473 -12.86226 -12.78555 -12.59450 -12.27283 -12.13469 -11.83383 -11.73758 -11.72599 -11.66799 -11.59790 -11.31375 -11.12979 -10.68992 -10.29981 -9.97438 -9.69235 -9.56890 -8.76899 -7.89000 -5.30768 0.48700 1.08799 1.12899 1.46510 1.49630 1.55952 1.57432 2.32219 2.37935 2.50736 3.27764 3.31845 3.55538 3.59329 3.80197 3.88657 3.94238 4.04158 4.08446 4.24793 4.31105 4.35742 4.40755 4.45891 4.50554 4.60097 4.61803 4.65916 4.67611 4.70481 4.78562 4.81878 4.88530 4.98659 5.05788 5.07088 5.16455 5.18507 5.24278 5.29898 5.34308 5.38253 5.45066 5.46997 5.50197 5.59975 5.73406 5.90898 6.13186 6.32661 6.41104 6.87587 7.11921 7.12301 7.81640 8.36322 9.19610 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.002029 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.522175 B =13793.579287 C =14379.786475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.269 5.269 3 N -0.284 5.284 4 C -0.041 4.041 5 C 0.599 3.401 6 O -0.566 6.566 7 N -0.703 5.703 8 C 0.167 3.833 9 C -0.140 4.140 10 C -0.142 4.142 11 C 0.206 3.794 12 N -0.615 5.615 13 C -0.258 4.258 14 H 0.071 0.929 15 C -0.056 4.056 16 N -0.940 5.940 17 Si 0.970 3.030 18 H -0.274 1.274 19 H -0.294 1.294 20 H -0.280 1.280 21 C 0.140 3.860 22 C -0.084 4.084 23 C -0.172 4.172 24 C 0.017 3.983 25 C -0.043 4.043 26 C -0.112 4.112 27 C -0.116 4.116 28 C -0.041 4.041 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.411 0.589 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.014 0.986 37 H 0.059 0.941 38 H 0.250 0.750 39 H 0.025 0.975 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.057 0.943 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 -30.729 -4.785 32.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.056 5.056 3 N -0.121 5.121 4 C -0.198 4.198 5 C 0.385 3.615 6 O -0.444 6.444 7 N -0.353 5.353 8 C 0.045 3.955 9 C -0.141 4.141 10 C -0.162 4.162 11 C 0.081 3.919 12 N -0.339 5.339 13 C -0.388 4.388 14 H 0.089 0.911 15 C -0.250 4.250 16 N -0.587 5.587 17 Si 0.798 3.202 18 H -0.200 1.200 19 H -0.220 1.220 20 H -0.206 1.206 21 C 0.014 3.986 22 C -0.122 4.122 23 C -0.182 4.182 24 C -0.109 4.109 25 C -0.081 4.081 26 C -0.150 4.150 27 C -0.154 4.154 28 C -0.079 4.079 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.246 0.754 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.076 0.924 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.216 -29.951 -4.668 31.683 hybrid contribution 0.659 1.229 0.410 1.453 sum -8.558 -28.722 -4.259 30.271 Atomic orbital electron populations 1.22635 0.70527 1.07289 1.06141 1.45532 1.09045 1.02135 1.48917 1.73782 1.02480 1.14760 1.21096 1.21483 0.90911 0.94293 1.13112 1.17180 0.86811 0.81716 0.75788 1.90735 1.23891 1.77483 1.52273 1.45931 1.10962 1.04822 1.73615 1.20323 0.87606 0.85364 1.02248 1.20600 1.03531 0.94314 0.95609 1.22974 0.98016 0.97465 0.97744 1.19395 0.97093 0.88042 0.87356 1.44404 1.72037 1.11488 1.05933 1.19488 1.35999 0.87591 0.95693 0.91105 1.25774 1.00930 1.01064 0.97269 1.70167 1.44674 1.38294 1.05523 0.85293 0.78841 0.79408 0.76626 1.19979 1.22030 1.20632 1.21165 0.94174 0.91931 0.91303 1.20721 1.00273 0.97227 0.93998 1.20196 0.96388 0.91862 1.09797 1.21672 0.89755 0.92855 1.06664 1.20421 0.99692 0.83690 1.04318 1.21586 0.93159 1.00348 0.99877 1.21661 0.98891 0.94579 1.00266 1.19953 0.93058 0.93548 1.01387 0.88087 0.88182 0.85323 0.75355 0.91603 0.90835 0.87073 0.96861 0.92284 0.94092 0.95645 0.92028 0.91451 0.89912 0.87673 0.88165 0.91891 0.88129 0.91664 0.90004 0.92405 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 11.17 127.77 1.43 1.96 16 2 N -0.27 -4.93 3.69 -356.38 -1.31 -6.24 16 3 N -0.28 -7.39 11.71 -48.62 -0.57 -7.96 16 4 C -0.04 -1.21 7.12 42.14 0.30 -0.91 16 5 C 0.60 19.75 7.82 86.75 0.68 20.43 16 6 O -0.57 -21.27 15.81 -3.95 -0.06 -21.33 16 7 N -0.70 -21.53 5.55 -469.82 -2.61 -24.13 16 8 C 0.17 5.29 5.66 85.64 0.48 5.77 16 9 C -0.14 -4.94 5.22 -15.13 -0.08 -5.02 16 10 C -0.14 -5.65 9.47 27.11 0.26 -5.39 16 11 C 0.21 10.32 5.23 85.42 0.45 10.77 16 12 N -0.61 -31.67 3.01 -703.01 -2.11 -33.78 16 13 C -0.26 -14.43 9.71 84.03 0.82 -13.62 16 14 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 15 C -0.06 -3.16 5.01 84.86 0.43 -2.73 16 16 N -0.94 -56.31 11.08 21.65 0.24 -56.07 16 17 Si 0.97 45.68 29.58 68.60 2.03 47.71 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 C 0.14 5.83 6.59 86.32 0.57 6.40 16 22 C -0.08 -2.90 5.95 29.72 0.18 -2.73 16 23 C -0.17 -4.22 5.99 -20.03 -0.12 -4.34 16 24 C 0.02 0.30 6.71 41.54 0.28 0.58 16 25 C -0.04 -0.33 5.89 29.96 0.18 -0.15 16 26 C -0.11 -0.91 5.89 30.76 0.18 -0.73 16 27 C -0.12 -1.51 5.91 30.80 0.18 -1.32 16 28 C -0.04 -0.90 5.54 29.92 0.17 -0.73 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.13 0.04 7.52 -2.38 -0.02 0.03 16 32 H 0.41 12.07 8.20 -92.71 -0.76 11.31 16 33 H 0.07 2.13 7.78 -2.39 -0.02 2.11 16 34 H 0.07 2.28 8.11 -2.39 -0.02 2.26 16 35 H 0.11 4.02 7.73 -2.91 -0.02 4.00 16 36 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 3.32 6.41 -2.39 -0.02 3.30 16 38 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 2.48 7.96 -2.39 -0.02 2.46 16 41 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.11 0.28 7.73 -2.39 -0.02 0.26 16 44 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 0.61 8.12 -2.38 -0.02 0.59 16 46 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 47 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 1.51 7.68 -2.39 -0.02 1.49 16 50 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.83 399.58 2.15 -73.67 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.18 Total: 19.91 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.37 Total: 8.24 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -6.36 Total: -128.19 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.83 2.15 -73.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001181909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.073 kcal (2) G-P(sol) polarization free energy of solvation -75.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds