Wall clock time and date at job start Wed Apr 1 2020 03:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.36762 * 2 1 4 4 C 1.54384 * 110.32383 * 237.82079 * 2 1 3 5 5 N 1.48566 * 104.59309 * 264.95507 * 4 2 1 6 6 C 1.39002 * 110.99928 * 200.95751 * 5 4 2 7 7 C 1.39135 * 119.70774 * 299.85623 * 6 5 4 8 8 C 1.38299 * 119.09899 * 179.75037 * 7 6 5 9 9 C 1.38888 * 118.50140 * 0.51342 * 8 7 6 10 10 C 1.38015 * 119.32943 * 359.72742 * 9 8 7 11 11 N 1.31976 * 120.85902 * 0.02562 * 10 9 8 12 12 C 1.48555 * 104.22059 * 320.51831 * 5 4 2 13 13 C 1.54260 * 110.32653 * 122.18090 * 2 1 3 14 14 H 1.09005 * 110.31940 * 359.90205 * 13 2 1 15 15 C 1.50695 * 110.32344 * 237.79169 * 13 2 1 16 16 O 1.21273 * 120.00223 * 0.02562 * 15 13 2 17 17 N 1.34776 * 119.99729 * 179.97438 * 15 13 2 18 18 C 1.47022 * 125.65036 * 359.97438 * 17 15 13 19 19 C 1.54325 * 107.27445 * 178.95858 * 18 17 15 20 20 C 1.55159 * 102.94327 * 337.81062 * 19 18 17 21 21 H 1.08995 * 110.99833 * 277.38907 * 20 19 18 22 22 N 1.46494 * 111.00296 * 153.57012 * 20 19 18 23 23 C 1.36945 * 119.99612 * 86.45755 * 22 20 19 24 24 H 1.07999 * 120.00077 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.99637 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00227 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99854 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46819 * 59.99973 * 27 25 23 29 29 H 1.48494 * 109.47285 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47086 * 300.00269 * 27 25 23 31 31 C 1.47425 * 125.64968 * 179.97438 * 17 15 13 32 32 H 1.08995 * 109.47006 * 297.81825 * 1 2 3 33 33 H 1.09002 * 109.47198 * 57.81865 * 1 2 3 34 34 H 1.08997 * 109.47385 * 177.81949 * 1 2 3 35 35 H 1.09003 * 110.41119 * 23.73186 * 4 2 1 36 36 H 1.08996 * 110.41382 * 146.06107 * 4 2 1 37 37 H 1.07998 * 120.45277 * 359.97438 * 7 6 5 38 38 H 1.07995 * 120.74848 * 180.21802 * 8 7 6 39 39 H 1.08001 * 120.33073 * 179.70725 * 9 8 7 40 40 H 1.08002 * 119.57189 * 180.02562 * 10 9 8 41 41 H 1.09008 * 110.41134 * 280.70047 * 12 5 4 42 42 H 1.08997 * 110.41115 * 158.26245 * 12 5 4 43 43 H 1.09002 * 109.88327 * 59.54431 * 18 17 15 44 44 H 1.08999 * 109.88379 * 298.38013 * 18 17 15 45 45 H 1.08990 * 110.72370 * 219.44234 * 19 18 17 46 46 H 1.09008 * 110.87130 * 96.24047 * 19 18 17 47 47 H 0.96995 * 120.00290 * 266.72646 * 22 20 19 48 48 H 0.97005 * 120.00046 * 179.97438 * 26 25 23 49 49 H 1.09003 * 110.36295 * 85.26960 * 31 17 15 50 50 H 1.08994 * 110.36780 * 322.94660 * 31 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7710 -1.2253 5 7 2.3148 -2.1467 -0.7225 6 6 3.2138 -2.8211 -1.5405 7 6 2.9053 -3.0273 -2.8814 8 6 3.8113 -3.6952 -3.6850 9 6 4.9954 -4.1460 -3.1160 10 6 5.2344 -3.9112 -1.7772 11 7 4.3537 -3.2664 -1.0352 12 6 2.8806 -1.9422 0.6357 13 6 2.0658 -0.7704 1.2243 14 1 1.2388 -1.1471 1.8262 15 6 2.9540 0.1195 2.0551 16 8 3.1512 1.2668 1.7152 17 7 3.5282 -0.3593 3.1764 18 6 3.3739 -1.7233 3.7029 19 6 4.2306 -1.8202 4.9828 20 6 5.2660 -0.6799 4.7951 21 1 6.0954 -1.0050 4.1671 22 7 5.7502 -0.1922 6.0888 23 6 6.8074 -0.8105 6.7015 24 1 7.2839 -1.6579 6.2312 25 6 7.2665 -0.3479 7.9271 26 7 6.6855 0.6845 8.5006 27 14 8.7082 -1.1917 8.7633 28 1 9.9019 -1.1205 7.8828 29 1 9.0015 -0.5112 10.0501 30 1 8.3675 -2.6139 9.0212 31 6 4.4153 0.3978 4.0782 32 1 -0.3633 0.4796 0.9089 33 1 -0.3634 0.5473 -0.8698 34 1 -0.3634 -1.0269 -0.0391 35 1 1.3213 -0.7859 -2.0209 36 1 2.9930 -0.3214 -1.5817 37 1 1.9727 -2.6674 -3.2901 38 1 3.6006 -3.8667 -4.7302 39 1 5.7215 -4.6752 -3.7152 40 1 6.1540 -4.2596 -1.3308 41 1 3.9361 -1.6771 0.5719 42 1 2.7490 -2.8388 1.2413 43 1 3.7243 -2.4468 2.9667 44 1 2.3273 -1.9121 3.9421 45 1 4.7288 -2.7878 5.0411 46 1 3.6228 -1.6468 5.8710 47 1 5.3195 0.5663 6.5133 48 1 7.0062 1.0075 9.3572 49 1 3.8278 0.9613 4.8031 50 1 5.0563 1.0678 3.5053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018859716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:48 Heat of formation + Delta-G solvation = 35.074496 kcal Electronic energy + Delta-G solvation = -30356.398247 eV Core-core repulsion = 26384.102552 eV Total energy + Delta-G solvation = -3972.295695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22792 -40.04722 -38.44541 -37.12965 -34.16931 -33.92359 -32.71589 -31.72870 -30.59646 -29.66169 -29.45350 -27.51324 -26.42086 -24.55980 -23.64767 -23.40322 -22.72905 -21.46225 -20.58371 -20.04044 -19.01919 -17.78896 -17.31912 -17.04180 -16.62277 -16.21460 -15.90905 -15.67669 -15.22940 -14.90950 -14.49652 -14.28709 -13.97557 -13.69054 -13.61863 -13.50766 -13.40972 -13.25287 -13.03243 -12.72535 -12.39471 -12.37855 -12.21280 -12.06547 -11.89066 -11.55142 -11.21992 -11.14820 -11.10169 -10.90041 -10.83512 -10.68468 -10.31747 -10.30987 -10.08315 -10.07404 -9.82506 -9.74779 -9.58668 -8.95790 -8.49510 -8.41130 -7.05266 -5.82497 -3.13130 0.82789 0.99597 2.68730 3.03689 3.29733 3.41433 3.46233 3.47071 3.61161 4.01773 4.27553 4.42073 4.52200 4.54699 4.58390 4.75874 4.81980 4.85505 4.93959 5.02901 5.05928 5.08321 5.28548 5.30273 5.35344 5.40840 5.42245 5.50751 5.54011 5.55802 5.60244 5.66006 5.71800 5.77361 5.81314 5.87100 5.92020 5.98993 6.03800 6.15401 6.17497 6.22854 6.31042 6.38398 6.56141 6.61958 6.84148 6.91954 7.64900 7.71332 7.72096 8.26722 8.35056 9.46471 10.00489 10.35485 11.39657 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.002551 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.832686 B =10972.865748 C =12610.303485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.107 0.893 4 C 0.047 3.953 5 N -0.454 5.454 6 C 0.302 3.698 7 C -0.182 4.182 8 C -0.057 4.057 9 C -0.201 4.201 10 C 0.126 3.874 11 N -0.514 5.514 12 C 0.060 3.940 13 C -0.111 4.111 14 H 0.108 0.892 15 C 0.533 3.467 16 O -0.544 6.544 17 N -0.608 5.608 18 C 0.098 3.902 19 C -0.154 4.154 20 C 0.172 3.828 21 H 0.063 0.937 22 N -0.715 5.715 23 C -0.244 4.244 24 H 0.072 0.928 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.909 3.091 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.285 1.285 31 C 0.099 3.901 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.157 0.843 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.386 0.614 48 H 0.257 0.743 49 H 0.069 0.931 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 -8.648 -24.653 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.125 0.875 4 C -0.079 4.079 5 N -0.172 5.172 6 C 0.070 3.930 7 C -0.205 4.205 8 C -0.083 4.083 9 C -0.222 4.222 10 C -0.032 4.032 11 N -0.228 5.228 12 C -0.067 4.067 13 C -0.133 4.133 14 H 0.126 0.874 15 C 0.321 3.679 16 O -0.422 6.422 17 N -0.342 5.342 18 C -0.025 4.025 19 C -0.196 4.196 20 C 0.060 3.940 21 H 0.081 0.919 22 N -0.355 5.355 23 C -0.375 4.375 24 H 0.090 0.910 25 C -0.206 4.206 26 N -0.578 5.578 27 Si 0.740 3.260 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.212 1.212 31 C -0.024 4.024 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.174 0.826 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.221 0.779 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.844 -8.227 -23.888 27.904 hybrid contribution 1.076 -0.256 -0.147 1.116 sum -10.767 -8.483 -24.035 27.669 Atomic orbital electron populations 1.21815 0.93621 1.02203 1.02024 1.21964 0.96722 1.00799 0.91332 0.87481 1.23315 1.00992 0.85304 0.98240 1.62560 1.35948 1.15750 1.02962 1.20061 0.87964 0.94712 0.90232 1.21556 1.01651 1.03994 0.93272 1.21457 0.92935 0.93969 0.99973 1.22029 0.99099 1.04187 0.96925 1.22606 0.97142 0.92676 0.90733 1.67649 1.01929 1.13382 1.39859 1.22957 0.98119 0.97662 0.87969 1.22168 0.98484 0.95606 0.97007 0.87435 1.19944 0.80300 0.87686 0.79965 1.90662 1.62443 1.18803 1.70300 1.48403 1.47943 1.14024 1.23784 1.22207 1.00220 0.83160 0.96946 1.23409 0.98737 1.02101 0.95326 1.21284 0.93188 0.90808 0.88680 0.91918 1.42247 1.37654 1.37605 1.18025 1.19163 1.06970 1.10443 1.00938 0.91029 1.24769 0.99761 0.98265 0.97850 1.69652 1.43236 1.26652 1.18279 0.86244 0.82336 0.78676 0.78765 1.21177 1.21659 1.21170 1.22532 0.92247 0.95410 0.92190 0.92315 0.92327 0.91988 0.88980 0.92601 0.84717 0.84761 0.84861 0.82574 0.90694 0.88702 0.91482 0.91977 0.90697 0.90535 0.77950 0.93307 0.91289 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.90 37.16 0.33 -0.81 16 2 C -0.09 -0.92 3.24 -89.24 -0.29 -1.21 16 3 H 0.11 1.33 6.46 -51.93 -0.34 0.99 16 4 C 0.05 0.45 5.45 -2.18 -0.01 0.44 16 5 N -0.45 -4.83 5.41 -168.78 -0.91 -5.74 16 6 C 0.30 3.32 6.23 -155.03 -0.97 2.36 16 7 C -0.18 -1.58 9.41 -39.23 -0.37 -1.95 16 8 C -0.06 -0.41 10.17 -39.32 -0.40 -0.81 16 9 C -0.20 -1.50 10.10 -39.42 -0.40 -1.90 16 10 C 0.13 1.18 11.17 -17.57 -0.20 0.99 16 11 N -0.51 -6.11 8.49 -12.44 -0.11 -6.21 16 12 C 0.06 0.69 4.12 -2.18 -0.01 0.68 16 13 C -0.11 -1.27 2.54 -90.39 -0.23 -1.50 16 14 H 0.11 1.10 7.71 -51.93 -0.40 0.70 16 15 C 0.53 8.15 7.07 -10.99 -0.08 8.07 16 16 O -0.54 -10.09 15.51 5.56 0.09 -10.00 16 17 N -0.61 -9.38 3.33 -170.53 -0.57 -9.95 16 18 C 0.10 1.30 6.16 -3.06 -0.02 1.28 16 19 C -0.15 -2.51 6.65 -24.89 -0.17 -2.68 16 20 C 0.17 3.33 3.68 -65.79 -0.24 3.09 16 21 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 22 N -0.71 -17.41 5.28 -51.36 -0.27 -17.68 16 23 C -0.24 -6.59 9.98 -15.06 -0.15 -6.74 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 27 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 31 C 0.10 1.77 6.53 -2.54 -0.02 1.76 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.68 7.73 -51.93 -0.40 0.28 16 36 H 0.06 0.59 7.98 -51.93 -0.41 0.17 16 37 H 0.13 0.92 7.88 -52.49 -0.41 0.51 16 38 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.07 1.03 6.96 -51.92 -0.36 0.67 16 42 H 0.09 1.06 7.16 -51.93 -0.37 0.68 16 43 H 0.07 0.81 6.29 -51.93 -0.33 0.48 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 47 H 0.39 10.03 7.71 -40.82 -0.31 9.72 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 50 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 LS Contribution 398.04 15.07 6.00 6.00 Total: -1.00 -32.35 398.04 -11.32 -43.67 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.95 Total: 9.16 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -3.30 Total: 0.69 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -1.13 Total: -66.49 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.35 -11.32 -43.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018859716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.746 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds