Wall clock time and date at job start Wed Apr 1 2020 03:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.36762 * 2 1 4 4 C 1.54384 * 110.32383 * 237.82079 * 2 1 3 5 5 N 1.48566 * 104.59309 * 264.95507 * 4 2 1 6 6 C 1.39002 * 110.99928 * 200.95751 * 5 4 2 7 7 C 1.39135 * 119.70774 * 299.85623 * 6 5 4 8 8 C 1.38299 * 119.09899 * 179.75037 * 7 6 5 9 9 C 1.38888 * 118.50140 * 0.51342 * 8 7 6 10 10 C 1.38015 * 119.32943 * 359.72742 * 9 8 7 11 11 N 1.31976 * 120.85902 * 0.02562 * 10 9 8 12 12 C 1.48555 * 104.22059 * 320.51831 * 5 4 2 13 13 C 1.54260 * 110.32653 * 122.18090 * 2 1 3 14 14 H 1.09005 * 110.31940 * 359.90205 * 13 2 1 15 15 C 1.50695 * 110.32344 * 237.79169 * 13 2 1 16 16 O 1.21273 * 120.00223 * 0.02562 * 15 13 2 17 17 N 1.34776 * 119.99729 * 179.97438 * 15 13 2 18 18 C 1.47022 * 125.65036 * 359.97438 * 17 15 13 19 19 C 1.54325 * 107.27445 * 178.95858 * 18 17 15 20 20 C 1.55159 * 102.94327 * 337.81062 * 19 18 17 21 21 H 1.08995 * 110.99833 * 277.38907 * 20 19 18 22 22 N 1.46494 * 111.00296 * 153.57012 * 20 19 18 23 23 C 1.36945 * 119.99612 * 86.45755 * 22 20 19 24 24 H 1.07999 * 120.00077 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.99637 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00227 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99854 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46819 * 59.99973 * 27 25 23 29 29 H 1.48494 * 109.47285 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47086 * 300.00269 * 27 25 23 31 31 C 1.47425 * 125.64968 * 179.97438 * 17 15 13 32 32 H 1.08995 * 109.47006 * 297.81825 * 1 2 3 33 33 H 1.09002 * 109.47198 * 57.81865 * 1 2 3 34 34 H 1.08997 * 109.47385 * 177.81949 * 1 2 3 35 35 H 1.09003 * 110.41119 * 23.73186 * 4 2 1 36 36 H 1.08996 * 110.41382 * 146.06107 * 4 2 1 37 37 H 1.07998 * 120.45277 * 359.97438 * 7 6 5 38 38 H 1.07995 * 120.74848 * 180.21802 * 8 7 6 39 39 H 1.08001 * 120.33073 * 179.70725 * 9 8 7 40 40 H 1.08002 * 119.57189 * 180.02562 * 10 9 8 41 41 H 1.09008 * 110.41134 * 280.70047 * 12 5 4 42 42 H 1.08997 * 110.41115 * 158.26245 * 12 5 4 43 43 H 1.09002 * 109.88327 * 59.54431 * 18 17 15 44 44 H 1.08999 * 109.88379 * 298.38013 * 18 17 15 45 45 H 1.08990 * 110.72370 * 219.44234 * 19 18 17 46 46 H 1.09008 * 110.87130 * 96.24047 * 19 18 17 47 47 H 0.96995 * 120.00290 * 266.72646 * 22 20 19 48 48 H 0.97005 * 120.00046 * 179.97438 * 26 25 23 49 49 H 1.09003 * 110.36295 * 85.26960 * 31 17 15 50 50 H 1.08994 * 110.36780 * 322.94660 * 31 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7710 -1.2253 5 7 2.3148 -2.1467 -0.7225 6 6 3.2138 -2.8211 -1.5405 7 6 2.9053 -3.0273 -2.8814 8 6 3.8113 -3.6952 -3.6850 9 6 4.9954 -4.1460 -3.1160 10 6 5.2344 -3.9112 -1.7772 11 7 4.3537 -3.2664 -1.0352 12 6 2.8806 -1.9422 0.6357 13 6 2.0658 -0.7704 1.2243 14 1 1.2388 -1.1471 1.8262 15 6 2.9540 0.1195 2.0551 16 8 3.1512 1.2668 1.7152 17 7 3.5282 -0.3593 3.1764 18 6 3.3739 -1.7233 3.7029 19 6 4.2306 -1.8202 4.9828 20 6 5.2660 -0.6799 4.7951 21 1 6.0954 -1.0050 4.1671 22 7 5.7502 -0.1922 6.0888 23 6 6.8074 -0.8105 6.7015 24 1 7.2839 -1.6579 6.2312 25 6 7.2665 -0.3479 7.9271 26 7 6.6855 0.6845 8.5006 27 14 8.7082 -1.1917 8.7633 28 1 9.9019 -1.1205 7.8828 29 1 9.0015 -0.5112 10.0501 30 1 8.3675 -2.6139 9.0212 31 6 4.4153 0.3978 4.0782 32 1 -0.3633 0.4796 0.9089 33 1 -0.3634 0.5473 -0.8698 34 1 -0.3634 -1.0269 -0.0391 35 1 1.3213 -0.7859 -2.0209 36 1 2.9930 -0.3214 -1.5817 37 1 1.9727 -2.6674 -3.2901 38 1 3.6006 -3.8667 -4.7302 39 1 5.7215 -4.6752 -3.7152 40 1 6.1540 -4.2596 -1.3308 41 1 3.9361 -1.6771 0.5719 42 1 2.7490 -2.8388 1.2413 43 1 3.7243 -2.4468 2.9667 44 1 2.3273 -1.9121 3.9421 45 1 4.7288 -2.7878 5.0411 46 1 3.6228 -1.6468 5.8710 47 1 5.3195 0.5663 6.5133 48 1 7.0062 1.0075 9.3572 49 1 3.8278 0.9613 4.8031 50 1 5.0563 1.0678 3.5053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018859716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:47 Heat of formation + Delta-G solvation = 14.469617 kcal Electronic energy + Delta-G solvation = -30357.291742 eV Core-core repulsion = 26384.102552 eV Total energy + Delta-G solvation = -3973.189190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.08484 -41.06957 -39.47240 -38.43097 -35.97685 -34.68578 -33.51225 -33.29614 -31.64661 -30.99057 -30.40426 -28.99421 -27.15391 -25.87475 -25.06264 -24.27368 -23.84354 -22.25413 -21.76206 -21.38251 -20.06669 -19.30190 -18.71258 -18.07666 -17.46187 -17.24305 -16.88388 -16.72710 -16.38605 -16.14707 -15.80622 -15.39085 -15.10284 -15.04368 -14.70949 -14.50507 -14.39119 -14.24589 -14.16041 -13.96679 -13.47192 -13.43081 -13.24141 -13.02948 -13.00410 -12.93330 -12.72038 -12.59811 -12.34850 -12.16260 -12.00451 -11.94035 -11.76723 -11.72928 -11.62243 -11.10254 -10.94597 -10.88728 -10.74298 -10.39425 -9.73066 -9.21438 -9.06614 -7.95889 -5.26423 0.17804 0.38565 1.46738 1.48590 1.51289 1.57220 1.83208 2.52583 2.57209 2.91326 3.22364 3.34403 3.41909 3.53326 3.67946 3.69215 3.85586 3.99540 4.06211 4.06723 4.14943 4.20438 4.23180 4.23544 4.27830 4.29630 4.37983 4.48329 4.60412 4.61352 4.66979 4.75815 4.77918 4.80406 4.83139 4.84941 4.96420 5.00159 5.08368 5.16058 5.21978 5.22764 5.30505 5.38318 5.39999 5.51834 5.53251 5.57153 6.11294 6.24484 6.46776 7.01534 7.04357 7.31357 8.02099 8.26900 9.27179 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.002551 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.832686 B =10972.865748 C =12610.303485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 H 0.082 0.918 4 C 0.052 3.948 5 N -0.450 5.450 6 C 0.273 3.727 7 C -0.184 4.184 8 C -0.057 4.057 9 C -0.194 4.194 10 C 0.102 3.898 11 N -0.548 5.548 12 C 0.068 3.932 13 C -0.101 4.101 14 H 0.130 0.870 15 C 0.530 3.470 16 O -0.583 6.583 17 N -0.609 5.609 18 C 0.106 3.894 19 C -0.143 4.143 20 C 0.167 3.833 21 H 0.057 0.943 22 N -0.728 5.728 23 C -0.242 4.242 24 H 0.080 0.920 25 C -0.073 4.073 26 N -0.969 5.969 27 Si 0.974 3.026 28 H -0.279 1.279 29 H -0.297 1.297 30 H -0.274 1.274 31 C 0.109 3.891 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.037 0.963 37 H 0.153 0.847 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.047 0.953 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.374 0.626 48 H 0.252 0.748 49 H 0.060 0.940 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.939 -11.154 -27.091 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 H 0.100 0.900 4 C -0.073 4.073 5 N -0.167 5.167 6 C 0.042 3.958 7 C -0.206 4.206 8 C -0.083 4.083 9 C -0.215 4.215 10 C -0.055 4.055 11 N -0.262 5.262 12 C -0.059 4.059 13 C -0.123 4.123 14 H 0.147 0.853 15 C 0.320 3.680 16 O -0.463 6.463 17 N -0.341 5.341 18 C -0.016 4.016 19 C -0.184 4.184 20 C 0.057 3.943 21 H 0.075 0.925 22 N -0.368 5.368 23 C -0.373 4.373 24 H 0.097 0.903 25 C -0.266 4.266 26 N -0.619 5.619 27 Si 0.803 3.197 28 H -0.205 1.205 29 H -0.224 1.224 30 H -0.200 1.200 31 C -0.015 4.015 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.056 0.944 37 H 0.171 0.829 38 H 0.185 0.815 39 H 0.179 0.821 40 H 0.185 0.815 41 H 0.065 0.935 42 H 0.119 0.881 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.207 0.793 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.064 -10.794 -26.383 31.357 hybrid contribution 1.493 0.515 0.459 1.645 sum -11.570 -10.279 -25.924 30.193 Atomic orbital electron populations 1.21770 0.91527 1.03054 1.02580 1.21943 0.98341 0.99305 0.91154 0.89984 1.23324 1.00819 0.84760 0.98443 1.62654 1.35882 1.15864 1.02346 1.20309 0.88278 0.95811 0.91388 1.21829 1.02661 1.03712 0.92411 1.21899 0.92241 0.92741 1.01387 1.22371 0.99690 1.03140 0.96273 1.22955 0.97416 0.93190 0.91904 1.67575 1.02859 1.14483 1.41288 1.22790 0.96529 0.97504 0.89118 1.22194 0.98038 0.94976 0.97062 0.85255 1.20675 0.80037 0.87676 0.79642 1.90646 1.63785 1.20758 1.71118 1.48466 1.47446 1.14561 1.23676 1.22279 1.01460 0.82185 0.95693 1.23198 0.97856 1.00763 0.96553 1.21405 0.93911 0.92352 0.86661 0.92521 1.42384 1.37486 1.37447 1.19500 1.19552 1.06939 1.10045 1.00792 0.90251 1.25581 1.02708 0.99343 0.98930 1.69816 1.45052 1.28528 1.18523 0.85204 0.79327 0.77916 0.77254 1.20546 1.22371 1.20020 1.22209 0.92225 0.94971 0.92144 0.92732 0.90827 0.90942 0.86324 0.94399 0.82897 0.81486 0.82121 0.81546 0.93453 0.88076 0.89596 0.88961 0.89827 0.91534 0.79335 0.93968 0.92151 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.90 71.98 0.64 -1.22 16 2 C -0.09 -1.73 3.24 -9.90 -0.03 -1.77 16 3 H 0.08 2.07 6.46 -2.38 -0.02 2.06 16 4 C 0.05 0.92 5.45 86.45 0.47 1.39 16 5 N -0.45 -8.89 5.41 -687.89 -3.72 -12.61 16 6 C 0.27 5.68 6.23 133.07 0.83 6.51 16 7 C -0.18 -2.75 9.41 22.50 0.21 -2.54 16 8 C -0.06 -0.64 10.17 22.44 0.23 -0.42 16 9 C -0.19 -2.42 10.10 22.37 0.23 -2.19 16 10 C 0.10 1.82 11.17 84.62 0.95 2.76 16 11 N -0.55 -12.73 8.49 -193.27 -1.64 -14.37 16 12 C 0.07 1.51 4.12 86.45 0.36 1.87 16 13 C -0.10 -2.21 2.54 -10.65 -0.03 -2.24 16 14 H 0.13 2.29 7.71 -2.38 -0.02 2.27 16 15 C 0.53 16.27 7.07 87.66 0.62 16.89 16 16 O -0.58 -22.37 15.51 -3.01 -0.05 -22.42 16 17 N -0.61 -18.68 3.33 -811.84 -2.70 -21.38 16 18 C 0.11 2.63 6.16 86.73 0.53 3.16 16 19 C -0.14 -4.53 6.65 31.78 0.21 -4.32 16 20 C 0.17 6.56 3.68 46.38 0.17 6.73 16 21 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 22 N -0.73 -36.37 5.28 -316.41 -1.67 -38.04 16 23 C -0.24 -13.16 9.98 84.03 0.84 -12.33 16 24 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 25 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 26 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 27 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 29 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 30 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 31 C 0.11 4.02 6.53 86.85 0.57 4.59 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.12 1.44 7.73 -2.39 -0.02 1.42 16 36 H 0.04 0.80 7.98 -2.39 -0.02 0.78 16 37 H 0.15 1.61 7.88 -2.91 -0.02 1.59 16 38 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 39 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.05 1.32 6.96 -2.38 -0.02 1.30 16 42 H 0.10 2.07 7.16 -2.39 -0.02 2.05 16 43 H 0.09 1.88 6.29 -2.39 -0.02 1.86 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 47 H 0.37 20.23 7.71 -92.71 -0.71 19.51 16 48 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 49 H 0.06 2.33 8.00 -2.39 -0.02 2.31 16 50 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 Total: -1.00 -72.62 398.04 0.01 -72.60 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.22 Total: 34.14 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 7.26 Total: 13.18 kcal Atomic # 7 Polarization: -135.70 SS G_CDS: -9.45 Total: -145.15 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -72.62 0.01 -72.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018859716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.074 kcal (2) G-P(sol) polarization free energy of solvation -72.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds