Wall clock time and date at job start Wed Apr 1 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.68391 * 2 1 4 4 C 1.53258 * 109.58652 * 120.32209 * 2 1 3 5 5 C 1.53166 * 109.45104 * 169.99792 * 4 2 1 6 6 C 1.53375 * 109.22372 * 290.66977 * 5 4 2 7 7 C 1.51123 * 108.23431 * 48.87706 * 6 5 4 8 8 N 1.30558 * 127.08386 * 163.88601 * 7 6 5 9 9 C 1.33452 * 109.67873 * 179.81075 * 8 7 6 10 10 C 1.36831 * 107.83960 * 0.42558 * 9 8 7 11 11 C 1.46763 * 126.91555 * 179.82670 * 10 9 8 12 12 O 1.21686 * 119.99961 * 196.75218 * 11 10 9 13 13 N 1.34775 * 119.99902 * 16.74852 * 11 10 9 14 14 C 1.47165 * 120.70864 * 154.46212 * 13 11 10 15 15 C 1.53885 * 108.03459 * 132.73400 * 14 13 11 16 16 H 1.09003 * 112.09506 * 181.90711 * 15 14 13 17 17 C 1.54542 * 107.82835 * 306.50037 * 15 14 13 18 18 C 1.54832 * 104.74346 * 88.94297 * 17 15 14 19 19 C 1.54545 * 104.74298 * 0.02562 * 18 17 15 20 20 H 1.09001 * 112.67639 * 146.80851 * 19 18 17 21 21 C 1.47164 * 120.70941 * 334.43310 * 13 11 10 22 22 N 1.48304 * 104.35594 * 24.82659 * 19 18 17 23 23 C 1.36938 * 128.07834 * 139.08510 * 22 19 18 24 24 H 1.07998 * 119.99870 * 36.76745 * 23 22 19 25 25 C 1.38809 * 120.00120 * 216.77504 * 23 22 19 26 26 N 1.31619 * 120.00044 * 180.54536 * 25 23 22 27 27 Si 1.86801 * 119.99946 * 0.53604 * 25 23 22 28 28 H 1.48500 * 109.47454 * 276.38817 * 27 25 23 29 29 H 1.48497 * 109.47054 * 36.38896 * 27 25 23 30 30 H 1.48507 * 109.46870 * 156.38838 * 27 25 23 31 31 N 1.34868 * 123.92546 * 343.94200 * 7 6 5 32 32 H 1.09003 * 109.46746 * 185.30177 * 1 2 3 33 33 H 1.09003 * 109.47044 * 305.29723 * 1 2 3 34 34 H 1.08995 * 109.47381 * 65.30004 * 1 2 3 35 35 H 1.08994 * 109.47087 * 50.01129 * 4 2 1 36 36 H 1.08996 * 109.48022 * 289.99156 * 4 2 1 37 37 H 1.09005 * 109.51199 * 170.74386 * 5 4 2 38 38 H 1.09005 * 109.50900 * 50.59455 * 5 4 2 39 39 H 1.08997 * 109.71050 * 289.19141 * 6 5 4 40 40 H 1.08996 * 109.71048 * 168.55610 * 6 5 4 41 41 H 1.08004 * 126.07985 * 180.25973 * 9 8 7 42 42 H 1.09006 * 109.75055 * 13.09566 * 14 13 11 43 43 H 1.08997 * 109.74767 * 252.37302 * 14 13 11 44 44 H 1.08999 * 110.36109 * 207.90907 * 17 15 14 45 45 H 1.09001 * 110.36687 * 330.22407 * 17 15 14 46 46 H 1.08998 * 110.30398 * 241.24337 * 18 17 15 47 47 H 1.09006 * 110.60943 * 118.90978 * 18 17 15 48 48 H 1.08997 * 109.75123 * 346.90097 * 21 13 11 49 49 H 1.08997 * 109.74390 * 107.58896 * 21 13 11 50 50 H 0.97008 * 120.00027 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0438 -0.7290 1.2464 5 6 3.5547 -0.9474 1.1230 6 6 3.8275 -1.9790 0.0212 7 6 3.0392 -1.5808 -1.2051 8 7 3.2116 -2.0109 -2.4257 9 6 2.3212 -1.4342 -3.2353 10 6 1.5542 -0.5888 -2.4807 11 6 0.4516 0.2578 -2.9512 12 8 0.0528 1.1769 -2.2606 13 7 -0.1191 0.0173 -4.1483 14 6 -1.5073 0.4265 -4.4147 15 6 -1.5403 1.1405 -5.7775 16 1 -2.5378 1.5028 -6.0266 17 6 -0.4866 2.2705 -5.7453 18 6 0.8223 1.6028 -6.2334 19 6 0.4334 0.1337 -6.5141 20 1 0.9931 -0.2980 -7.3439 21 6 0.6329 -0.6595 -5.2170 22 7 -1.0234 0.1847 -6.7873 23 6 -1.7277 -0.4964 -7.7440 24 1 -1.4546 -1.5105 -7.9960 25 6 -2.7925 0.1165 -8.3900 26 7 -3.4761 -0.5419 -9.3019 27 14 -3.2553 1.8757 -7.9650 28 1 -4.1278 1.8815 -6.7633 29 1 -2.0241 2.6579 -7.6865 30 1 -3.9819 2.4861 -9.1073 31 7 2.0208 -0.6968 -1.1910 32 1 -0.3633 -1.0233 0.0950 33 1 -0.3633 0.5938 0.8388 34 1 -0.3634 0.4294 -0.9336 35 1 1.5434 -1.6932 1.3354 36 1 1.8346 -0.1278 2.1312 37 1 3.9482 -1.3144 2.0710 38 1 4.0391 -0.0049 0.8673 39 1 3.5119 -2.9669 0.3564 40 1 4.8917 -1.9925 -0.2143 41 1 2.2249 -1.6025 -4.2978 42 1 -1.8471 1.1071 -3.6340 43 1 -2.1513 -0.4524 -4.4436 44 1 -0.7766 3.0787 -6.4167 45 1 -0.3638 2.6459 -4.7294 46 1 1.5846 1.6518 -5.4559 47 1 1.1801 2.0810 -7.1452 48 1 1.6919 -0.6886 -4.9606 49 1 0.2571 -1.6745 -5.3457 50 1 -4.2205 -0.1136 -9.7531 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029316743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:50 Heat of formation + Delta-G solvation = 105.996530 kcal Electronic energy + Delta-G solvation = -32411.002001 eV Core-core repulsion = 28441.781717 eV Total energy + Delta-G solvation = -3969.220285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.64506 -40.26892 -38.21189 -37.31029 -34.28281 -33.78190 -32.46042 -31.47348 -30.78283 -29.94341 -29.40575 -27.32952 -26.49648 -24.53035 -23.87131 -23.03426 -22.64193 -21.87000 -20.44724 -20.00644 -19.34623 -18.79936 -17.47567 -16.83055 -16.51314 -16.03859 -15.90253 -15.31932 -15.26373 -14.88191 -14.69630 -14.49112 -14.21254 -13.79978 -13.50335 -13.40072 -13.33531 -13.09249 -12.98009 -12.61834 -12.46087 -12.28783 -11.92677 -11.78224 -11.65191 -11.51489 -11.50036 -11.27054 -11.08883 -10.89975 -10.63448 -10.51951 -10.32591 -10.20424 -9.87964 -9.86767 -9.70995 -9.61212 -9.46607 -8.69003 -8.48055 -8.25006 -6.94960 -6.03211 -3.54618 1.30119 2.35554 2.77142 3.23137 3.28433 3.30905 3.38679 3.43288 4.01565 4.19258 4.27620 4.34296 4.42718 4.61365 4.68042 4.85299 4.92409 5.00304 5.07252 5.15148 5.22454 5.32291 5.36607 5.37871 5.41102 5.42824 5.50602 5.54296 5.59353 5.60685 5.66932 5.69432 5.76959 5.82898 5.94022 6.11651 6.12673 6.14084 6.25427 6.32363 6.36839 6.42642 6.51652 6.53079 6.64375 6.78367 6.95120 7.02998 7.63634 7.75073 7.89015 8.22465 8.24656 8.69054 9.55411 10.17603 11.11135 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023223 B = 0.003285 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.407742 B = 8521.341126 C = 9018.254543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.138 3.862 3 H 0.093 0.907 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.034 4.034 7 C 0.220 3.780 8 N -0.492 5.492 9 C 0.012 3.988 10 C -0.074 4.074 11 C 0.593 3.407 12 O -0.534 6.534 13 N -0.586 5.586 14 C 0.108 3.892 15 C 0.117 3.883 16 H 0.081 0.919 17 C -0.130 4.130 18 C -0.124 4.124 19 C 0.138 3.862 20 H 0.093 0.907 21 C 0.075 3.925 22 N -0.596 5.596 23 C -0.245 4.245 24 H 0.088 0.912 25 C 0.033 3.967 26 N -0.910 5.910 27 Si 0.888 3.112 28 H -0.285 1.285 29 H -0.255 1.255 30 H -0.304 1.304 31 N -0.417 5.417 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.201 0.799 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.094 0.906 49 H 0.074 0.926 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.923 0.554 20.017 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C 0.036 3.964 3 H 0.111 0.889 4 C -0.170 4.170 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.042 4.042 8 N -0.211 5.211 9 C -0.141 4.141 10 C -0.191 4.191 11 C 0.383 3.617 12 O -0.416 6.416 13 N -0.317 5.317 14 C -0.016 4.016 15 C 0.010 3.990 16 H 0.099 0.901 17 C -0.169 4.169 18 C -0.163 4.163 19 C 0.030 3.970 20 H 0.111 0.889 21 C -0.049 4.049 22 N -0.319 5.319 23 C -0.373 4.373 24 H 0.106 0.894 25 C -0.167 4.167 26 N -0.552 5.552 27 Si 0.720 3.280 28 H -0.214 1.214 29 H -0.180 1.180 30 H -0.233 1.233 31 N -0.098 5.098 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.217 0.783 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.111 0.889 49 H 0.092 0.908 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.977 0.483 20.003 23.849 hybrid contribution -1.133 1.402 0.468 1.862 sum 11.845 1.884 20.471 23.726 Atomic orbital electron populations 1.23210 0.92478 1.02687 1.08980 1.21590 0.96897 0.96057 0.81859 0.88933 1.22053 0.96216 1.01813 0.96951 1.21726 0.95909 0.99769 0.99147 1.20257 0.99429 0.99568 0.88034 1.23439 0.91437 0.93450 0.95852 1.69986 1.25212 1.26169 0.99697 1.23800 0.93883 0.95759 1.00662 1.20720 1.04617 1.08220 0.85552 1.16735 0.80604 0.82834 0.81512 1.90415 1.65594 1.29664 1.55908 1.47522 1.14209 1.58697 1.11233 1.22406 0.80204 1.00005 0.98945 1.22283 0.97211 0.91034 0.88437 0.90121 1.22718 0.95765 0.98071 1.00343 1.22541 0.96681 0.97193 0.99891 1.21930 0.87757 0.93413 0.93874 0.88904 1.23192 0.95661 0.97383 0.88623 1.45352 1.00968 1.51018 1.34512 1.18549 1.11959 0.95821 1.10938 0.89424 1.25381 0.98787 0.97556 0.94993 1.69723 1.21578 1.37633 1.26268 0.86865 0.78714 0.86419 0.75975 1.21354 1.17964 1.23254 1.45342 1.25143 1.32264 1.07068 0.93162 0.91266 0.84812 0.90625 0.89283 0.89839 0.91052 0.89080 0.88430 0.78307 0.90300 0.90973 0.91793 0.91882 0.92672 0.92039 0.88853 0.90796 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.60 8.90 37.16 0.33 -2.27 16 2 C 0.14 1.51 3.28 -67.82 -0.22 1.28 16 3 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -0.98 5.26 -26.51 -0.14 -1.12 16 5 C -0.13 -0.80 5.96 -26.45 -0.16 -0.96 16 6 C -0.03 -0.28 6.33 -27.48 -0.17 -0.45 16 7 C 0.22 2.78 7.63 -155.32 -1.19 1.59 16 8 N -0.49 -7.20 11.20 -10.35 -0.12 -7.32 16 9 C 0.01 0.17 10.26 -17.36 -0.18 -0.01 16 10 C -0.07 -1.11 6.58 -82.35 -0.54 -1.65 16 11 C 0.59 9.64 6.74 -12.82 -0.09 9.55 16 12 O -0.53 -9.33 12.61 5.20 0.07 -9.27 16 13 N -0.59 -9.66 2.25 -173.37 -0.39 -10.05 16 14 C 0.11 1.95 5.94 -3.22 -0.02 1.94 16 15 C 0.12 2.38 2.82 -65.65 -0.19 2.19 16 16 H 0.08 1.79 3.32 -51.93 -0.17 1.62 16 17 C -0.13 -2.39 5.91 -24.96 -0.15 -2.54 16 18 C -0.12 -2.08 6.21 -24.95 -0.15 -2.24 16 19 C 0.14 2.46 4.28 -65.95 -0.28 2.18 16 20 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 21 C 0.08 1.16 4.52 -3.50 -0.02 1.14 16 22 N -0.60 -13.14 2.47 -152.90 -0.38 -13.52 16 23 C -0.25 -6.49 10.81 -15.06 -0.16 -6.65 16 24 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 25 C 0.03 0.93 5.50 -17.43 -0.10 0.83 16 26 N -0.91 -27.11 13.97 55.49 0.78 -26.34 16 27 Si 0.89 21.51 24.66 -169.99 -4.19 17.32 16 28 H -0.29 -6.76 6.73 56.52 0.38 -6.38 16 29 H -0.25 -5.84 4.68 56.52 0.26 -5.57 16 30 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 31 N -0.42 -5.52 3.00 -102.73 -0.31 -5.82 16 32 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.14 2.03 3.12 -57.02 -0.18 1.86 16 35 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.20 2.55 4.56 -52.48 -0.24 2.31 16 42 H 0.08 1.37 7.21 -51.93 -0.37 0.99 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.06 1.21 6.44 -51.93 -0.33 0.88 16 45 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 46 H 0.05 0.85 7.83 -51.93 -0.41 0.44 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.09 1.23 4.04 -51.93 -0.21 1.02 16 49 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -31.54 362.05 -10.03 -41.57 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.53 Total: 5.15 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -3.42 Total: 2.82 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.42 Total: -63.06 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.19 Total: 17.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.54 -10.03 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029316743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.570 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds