Wall clock time and date at job start Wed Apr 1 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46258 * 2 1 4 4 C 1.53138 * 109.45325 * 240.03318 * 2 1 3 5 5 C 1.53381 * 109.24793 * 170.18303 * 4 2 1 6 6 C 1.51096 * 108.19862 * 48.94378 * 5 4 2 7 7 N 1.29798 * 127.18082 * 164.30316 * 6 5 4 8 8 C 1.35891 * 108.85422 * 180.25305 * 7 6 5 9 9 C 1.47323 * 126.21209 * 179.85964 * 8 7 6 10 10 O 1.21623 * 119.99653 * 186.02285 * 9 8 7 11 11 N 1.34773 * 119.99864 * 6.02495 * 9 8 7 12 12 C 1.47161 * 120.70951 * 6.72292 * 11 9 8 13 13 C 1.55896 * 107.94959 * 132.45651 * 12 11 9 14 14 H 1.08996 * 112.45638 * 181.84699 * 13 12 11 15 15 C 1.54552 * 108.44145 * 307.13446 * 13 12 11 16 16 C 1.53733 * 104.95420 * 88.28640 * 15 13 12 17 17 C 1.54542 * 104.95321 * 359.97438 * 16 15 13 18 18 H 1.09008 * 112.17754 * 146.28852 * 17 16 15 19 19 C 1.47164 * 120.70715 * 186.74885 * 11 9 8 20 20 N 1.48300 * 104.35886 * 24.57990 * 17 16 15 21 21 C 1.36936 * 128.07801 * 139.08456 * 20 17 16 22 22 H 1.08006 * 120.00278 * 343.40775 * 21 20 17 23 23 C 1.38814 * 120.00349 * 163.41389 * 21 20 17 24 24 N 1.31622 * 119.99794 * 351.82408 * 23 21 20 25 25 Si 1.86795 * 120.00168 * 171.82532 * 23 21 20 26 26 H 1.48498 * 109.47420 * 269.99610 * 25 23 21 27 27 H 1.48505 * 109.47317 * 30.00185 * 25 23 21 28 28 H 1.48508 * 109.47348 * 149.99792 * 25 23 21 29 29 C 1.36577 * 107.57318 * 359.59929 * 8 7 6 30 30 N 1.34870 * 106.78929 * 0.19206 * 29 8 7 31 31 C 1.46576 * 127.50210 * 180.13643 * 30 29 8 32 32 H 1.09000 * 109.47387 * 300.02265 * 1 2 3 33 33 H 1.09004 * 109.47111 * 60.02035 * 1 2 3 34 34 H 1.08993 * 109.47120 * 180.02562 * 1 2 3 35 35 H 1.09005 * 109.50770 * 290.11765 * 4 2 1 36 36 H 1.08999 * 109.50787 * 50.20149 * 4 2 1 37 37 H 1.09009 * 109.71851 * 168.61870 * 5 4 2 38 38 H 1.09006 * 109.72263 * 289.22059 * 5 4 2 39 39 H 1.09005 * 109.75170 * 252.41079 * 12 11 9 40 40 H 1.09000 * 109.75382 * 13.14804 * 12 11 9 41 41 H 1.08995 * 110.36179 * 207.00479 * 15 13 12 42 42 H 1.09000 * 110.36171 * 329.21155 * 15 13 12 43 43 H 1.09000 * 110.41688 * 241.06700 * 16 15 13 44 44 H 1.08995 * 110.20580 * 118.81916 * 16 15 13 45 45 H 1.09003 * 109.75086 * 107.58704 * 19 11 9 46 46 H 1.08993 * 109.79141 * 346.87601 * 19 11 9 47 47 H 0.97003 * 120.00201 * 180.02562 * 24 23 21 48 48 H 1.08003 * 126.60373 * 180.15277 * 29 8 7 49 49 H 1.08998 * 109.58407 * 282.58050 * 31 30 29 50 50 H 1.09001 * 109.58456 * 42.99554 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2509 5 6 3.5538 -0.5081 -1.3756 6 6 4.1859 -0.8198 -0.0391 7 7 5.4427 -1.0356 0.2030 8 6 5.5979 -1.2849 1.5298 9 6 6.8667 -1.5817 2.2171 10 8 6.8628 -1.8958 3.3921 11 7 8.0317 -1.5053 1.5438 12 6 8.0714 -0.9866 0.1672 13 6 9.2315 0.0511 0.0781 14 1 9.3066 0.5079 -0.9087 15 6 9.0432 1.0927 1.2042 16 6 9.7776 0.5013 2.4184 17 6 10.3462 -0.8474 1.9225 18 1 11.3015 -1.0877 2.3892 19 6 9.2911 -1.9393 2.1693 20 7 10.4667 -0.6781 0.4541 21 6 11.4842 -1.0927 -0.3632 22 1 12.4396 -1.3658 0.0600 23 6 11.2877 -1.1621 -1.7356 24 7 10.0838 -0.9862 -2.2378 25 14 12.7319 -1.5049 -2.8697 26 1 13.3589 -0.2212 -3.2747 27 1 13.7318 -2.3417 -2.1588 28 1 12.2530 -2.2246 -4.0773 29 6 4.3648 -1.2044 2.1115 30 7 3.4886 -0.9132 1.1284 31 6 2.0406 -0.7220 1.2514 32 1 -0.3634 0.5142 0.8898 33 1 -0.3633 0.5135 -0.8902 34 1 -0.3633 -1.0276 0.0005 35 1 1.8280 -1.7873 -1.1683 36 1 1.5412 -0.3182 -2.1323 37 1 3.9576 -1.1748 -2.1377 38 1 3.7584 0.5275 -1.6474 39 1 8.2481 -1.8056 -0.5301 40 1 7.1265 -0.4977 -0.0697 41 1 9.4921 2.0443 0.9195 42 1 7.9841 1.2248 1.4255 43 1 9.0818 0.3395 3.2418 44 1 10.5861 1.1632 2.7285 45 1 9.6202 -2.8774 1.7223 46 1 9.1438 -2.0737 3.2408 47 1 9.9464 -1.0350 -3.1968 48 1 4.1354 -1.3472 3.1572 49 1 1.5502 -1.6915 1.3395 50 1 1.8252 -0.1198 2.1341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029357672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:36 Heat of formation + Delta-G solvation = 48.089843 kcal Electronic energy + Delta-G solvation = -31777.204187 eV Core-core repulsion = 27805.472879 eV Total energy + Delta-G solvation = -3971.731307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.44949 -41.27030 -39.21946 -38.04002 -35.36918 -34.50812 -34.08494 -32.63380 -31.91096 -31.03443 -29.80393 -28.13168 -27.23728 -25.68242 -25.30440 -24.73985 -23.47600 -22.40004 -21.30090 -20.94324 -20.18710 -20.00886 -18.80377 -17.75381 -17.38361 -17.07465 -16.73257 -16.68056 -16.34142 -15.65903 -15.57090 -15.36021 -14.97041 -14.83217 -14.68393 -14.60482 -14.51522 -14.27460 -13.97706 -13.55413 -13.38080 -13.26552 -13.13792 -13.06581 -12.85858 -12.71267 -12.54903 -12.40947 -12.00471 -11.97108 -11.89980 -11.74608 -11.64300 -11.50641 -11.45130 -11.17065 -11.11936 -10.86807 -10.67983 -10.27003 -9.72836 -9.36788 -8.60053 -7.79960 -5.17098 0.59984 1.40365 1.49742 1.50509 1.58710 1.67540 2.26484 2.52683 2.55589 3.20104 3.37324 3.45981 3.55853 3.62048 3.72422 3.90068 4.05296 4.10920 4.17025 4.23017 4.28747 4.36784 4.41139 4.42063 4.47855 4.55750 4.59413 4.67637 4.73894 4.80845 4.89661 4.91701 4.96108 5.01127 5.02345 5.10509 5.12018 5.14541 5.17566 5.21213 5.31486 5.35398 5.39064 5.43903 5.57526 5.64841 5.75284 5.89989 6.15994 6.28009 6.63993 6.90420 7.11060 7.31255 7.75651 8.57469 9.31137 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.003365 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.327111 B = 8319.435526 C = 9616.698361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.081 0.919 4 C -0.113 4.113 5 C -0.037 4.037 6 C 0.206 3.794 7 N -0.486 5.486 8 C -0.096 4.096 9 C 0.589 3.411 10 O -0.592 6.592 11 N -0.581 5.581 12 C 0.116 3.884 13 C 0.165 3.835 14 H 0.081 0.919 15 C -0.122 4.122 16 C -0.110 4.110 17 C 0.131 3.869 18 H 0.086 0.914 19 C 0.106 3.894 20 N -0.606 5.606 21 C -0.239 4.239 22 H 0.075 0.925 23 C -0.054 4.054 24 N -0.930 5.930 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.274 1.274 28 H -0.297 1.297 29 C 0.049 3.951 30 N -0.446 5.446 31 C 0.097 3.903 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.027 0.973 40 H 0.120 0.880 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.085 0.915 47 H 0.247 0.753 48 H 0.208 0.792 49 H 0.103 0.897 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.221 4.201 4.686 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.099 0.901 4 C -0.151 4.151 5 C -0.076 4.076 6 C -0.058 4.058 7 N -0.206 5.206 8 C -0.224 4.224 9 C 0.379 3.621 10 O -0.476 6.476 11 N -0.310 5.310 12 C -0.008 4.008 13 C 0.058 3.942 14 H 0.099 0.901 15 C -0.161 4.161 16 C -0.149 4.149 17 C 0.023 3.977 18 H 0.104 0.896 19 C -0.019 4.019 20 N -0.327 5.327 21 C -0.368 4.368 22 H 0.093 0.907 23 C -0.248 4.248 24 N -0.577 5.577 25 Si 0.803 3.197 26 H -0.214 1.214 27 H -0.200 1.200 28 H -0.223 1.223 29 C -0.093 4.093 30 N -0.126 5.126 31 C -0.023 4.023 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.046 0.954 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.103 0.897 47 H 0.057 0.943 48 H 0.224 0.776 49 H 0.121 0.879 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.614 3.997 4.476 23.396 hybrid contribution 0.726 -0.642 -0.235 0.997 sum -21.888 3.355 4.241 22.546 Atomic orbital electron populations 1.21726 0.91261 1.03137 1.03452 1.21477 0.98269 0.99827 0.92490 0.90069 1.21773 0.92307 1.01648 0.99392 1.20444 0.95575 1.03884 0.87667 1.24346 0.86643 1.03656 0.91160 1.70380 1.16871 1.18804 1.14527 1.20531 0.93974 1.16642 0.91219 1.17370 0.82865 0.76812 0.85068 1.90656 1.87543 1.53152 1.16200 1.48013 1.06158 1.60782 1.16088 1.23115 1.01656 0.97046 0.78944 1.22211 0.85131 0.90328 0.96580 0.90087 1.22347 0.98836 0.98452 0.96465 1.22254 0.99229 0.96460 0.96924 1.22121 0.95957 0.93617 0.86010 0.89590 1.22233 0.84584 0.97475 0.97580 1.45377 1.21098 1.64233 1.02030 1.19287 0.90833 1.38249 0.88419 0.90700 1.25591 0.98749 1.02137 0.98349 1.70067 1.20573 1.55965 1.11119 0.85164 0.78915 0.77372 0.78275 1.21439 1.19961 1.22348 1.22584 0.88097 1.02446 0.96131 1.45574 1.09912 1.50436 1.06706 1.22597 0.74092 1.03680 1.01900 0.91344 0.90844 0.91585 0.91101 0.87610 0.89030 0.88296 0.95450 0.86314 0.92364 0.92791 0.92002 0.91074 0.94225 0.89705 0.94329 0.77574 0.87883 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.51 9.17 71.98 0.66 0.15 16 2 C -0.10 -0.84 2.73 -10.67 -0.03 -0.86 16 3 H 0.08 0.77 8.11 -2.39 -0.02 0.76 16 4 C -0.11 -1.16 5.25 30.77 0.16 -1.00 16 5 C -0.04 -0.68 6.33 30.10 0.19 -0.49 16 6 C 0.21 5.56 7.64 138.05 1.05 6.61 16 7 N -0.49 -17.89 7.79 -176.08 -1.37 -19.26 16 8 C -0.10 -3.58 6.65 40.52 0.27 -3.31 16 9 C 0.59 25.42 7.68 86.63 0.67 26.09 16 10 O -0.59 -26.66 16.35 -4.10 -0.07 -26.72 16 11 N -0.58 -26.38 2.29 -815.05 -1.86 -28.24 16 12 C 0.12 5.66 5.42 87.26 0.47 6.13 16 13 C 0.16 8.20 3.21 46.18 0.15 8.35 16 14 H 0.08 4.57 6.42 -2.39 -0.02 4.55 16 15 C -0.12 -5.09 6.19 31.37 0.19 -4.90 16 16 C -0.11 -4.28 6.18 31.37 0.19 -4.09 16 17 C 0.13 5.73 4.27 45.45 0.19 5.92 16 18 H 0.09 3.53 8.14 -2.38 -0.02 3.51 16 19 C 0.11 4.70 5.95 86.53 0.51 5.21 16 20 N -0.61 -31.48 2.77 -633.08 -1.76 -33.23 16 21 C -0.24 -13.42 10.37 84.03 0.87 -12.55 16 22 H 0.08 4.08 7.84 -2.91 -0.02 4.05 16 23 C -0.05 -3.02 5.42 84.86 0.46 -2.56 16 24 N -0.93 -54.74 10.34 21.65 0.22 -54.51 16 25 Si 0.97 46.02 29.56 68.60 2.03 48.05 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 29 C 0.05 1.34 11.33 83.84 0.95 2.29 16 30 N -0.45 -9.68 3.11 -512.77 -1.60 -11.28 16 31 C 0.10 1.05 6.25 86.44 0.54 1.59 16 32 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 34 H 0.07 0.20 8.14 -2.39 -0.02 0.19 16 35 H 0.07 0.76 8.12 -2.38 -0.02 0.74 16 36 H 0.11 0.66 8.12 -2.39 -0.02 0.64 16 37 H 0.09 1.83 8.14 -2.38 -0.02 1.82 16 38 H 0.10 1.68 8.14 -2.38 -0.02 1.67 16 39 H 0.03 1.57 7.73 -2.38 -0.02 1.55 16 40 H 0.12 5.57 4.46 -4.45 -0.02 5.55 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.05 2.18 7.88 -2.39 -0.02 2.16 16 43 H 0.06 2.34 7.86 -2.39 -0.02 2.32 16 44 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 45 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 3.52 7.08 -2.39 -0.02 3.51 16 47 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 48 H 0.21 4.57 8.06 -2.91 -0.02 4.55 16 49 H 0.10 0.84 8.12 -2.39 -0.02 0.82 16 50 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -74.93 383.10 4.03 -70.90 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.92 Total: 21.73 kcal Atomic # 6 Polarization: 25.07 SS G_CDS: 7.51 Total: 32.58 kcal Atomic # 7 Polarization: -140.16 SS G_CDS: -6.36 Total: -146.53 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.07 Total: -26.72 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -74.93 4.03 -70.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029357672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.985 kcal (2) G-P(sol) polarization free energy of solvation -74.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds