Wall clock time and date at job start Wed Apr 1 2020 03:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40299 * 126.09302 * 2 1 4 4 C 1.31065 * 108.27490 * 179.90724 * 3 2 1 5 5 C 1.39301 * 108.07497 * 359.97438 * 4 3 2 6 6 C 1.34324 * 126.09374 * 179.97438 * 2 1 3 7 7 C 1.50824 * 128.03149 * 0.22718 * 6 2 1 8 8 C 1.53365 * 108.38222 * 163.36526 * 7 6 2 9 9 H 1.09001 * 109.46041 * 289.93480 * 8 7 6 10 10 C 1.50697 * 109.46631 * 169.95113 * 8 7 6 11 11 O 1.21276 * 120.00112 * 336.13709 * 10 8 7 12 12 N 1.34776 * 119.99726 * 156.13179 * 10 8 7 13 13 C 1.46355 * 120.77788 * 185.31023 * 12 10 8 14 14 C 1.53888 * 108.15981 * 132.71168 * 13 12 10 15 15 H 1.08992 * 112.57947 * 182.37191 * 14 13 12 16 16 C 1.54552 * 107.82912 * 306.65481 * 14 13 12 17 17 C 1.54280 * 104.85117 * 89.06508 * 16 14 13 18 18 C 1.54965 * 104.80643 * 359.81504 * 17 16 14 19 19 H 1.08998 * 112.25382 * 146.60870 * 18 17 16 20 20 C 1.47168 * 120.71181 * 5.61420 * 12 10 8 21 21 N 1.48304 * 104.15280 * 24.98914 * 18 17 16 22 22 C 1.36945 * 128.07549 * 139.04329 * 21 18 17 23 23 H 1.07996 * 119.99483 * 195.83200 * 22 21 18 24 24 C 1.38807 * 119.99835 * 15.83019 * 22 21 18 25 25 N 1.31618 * 120.00229 * 9.30188 * 24 22 21 26 26 Si 1.86802 * 119.99985 * 189.30233 * 24 22 21 27 27 H 1.48492 * 109.47157 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.47065 * 300.00508 * 26 24 22 29 29 H 1.48498 * 109.46761 * 60.00063 * 26 24 22 30 30 C 1.53106 * 109.50709 * 49.93916 * 8 7 6 31 31 C 1.50844 * 127.89842 * 180.08976 * 5 4 3 32 32 H 1.08998 * 109.47346 * 90.02365 * 1 2 3 33 33 H 1.09000 * 109.47290 * 210.02522 * 1 2 3 34 34 H 1.08999 * 109.47182 * 330.02454 * 1 2 3 35 35 H 1.07998 * 125.96587 * 180.02562 * 4 3 2 36 36 H 1.09002 * 109.68185 * 43.64475 * 7 6 2 37 37 H 1.08998 * 109.68388 * 283.08782 * 7 6 2 38 38 H 1.09001 * 109.56147 * 13.10992 * 13 12 10 39 39 H 1.09002 * 109.80706 * 252.45598 * 13 12 10 40 40 H 1.08994 * 110.35933 * 207.91425 * 16 14 13 41 41 H 1.09005 * 110.35828 * 330.11127 * 16 14 13 42 42 H 1.08999 * 110.35885 * 118.84710 * 17 16 14 43 43 H 1.08993 * 110.36234 * 241.15666 * 17 16 14 44 44 H 1.08996 * 109.75350 * 107.60937 * 20 12 10 45 45 H 1.08994 * 109.79215 * 346.89704 * 20 12 10 46 46 H 0.96996 * 120.00249 * 179.97438 * 25 24 22 47 47 H 1.08998 * 109.46646 * 49.72911 * 30 8 7 48 48 H 1.08997 * 109.46945 * 169.70754 * 30 8 7 49 49 H 1.09003 * 109.68221 * 43.72702 * 31 5 4 50 50 H 1.09002 * 109.68043 * 283.17149 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5393 0.7327 0.0020 5 6 3.5455 -0.6603 0.0039 6 6 2.2563 -1.0854 0.0005 7 6 1.8437 -2.5361 -0.0036 8 6 3.0541 -3.3820 -0.4179 9 1 3.2705 -3.2139 -1.4729 10 6 2.7478 -4.8404 -0.1943 11 8 1.9063 -5.1660 0.6161 12 7 3.4090 -5.7830 -0.8949 13 6 3.0464 -7.1960 -0.7768 14 6 2.9420 -7.7845 -2.1949 15 1 2.6335 -8.8298 -2.1925 16 6 1.9760 -6.8928 -3.0074 17 6 2.8733 -5.8040 -3.6315 18 6 4.3028 -6.1356 -3.1337 19 1 5.0654 -5.8831 -3.8704 20 6 4.5166 -5.4146 -1.7911 21 7 4.2591 -7.5903 -2.8484 22 6 5.2145 -8.5332 -3.1197 23 1 4.9597 -9.5824 -3.0955 24 6 6.5101 -8.1404 -3.4259 25 7 6.8687 -6.8826 -3.2782 26 14 7.7448 -9.3968 -4.0475 27 1 9.0468 -8.7286 -4.2992 28 1 7.9241 -10.4612 -3.0276 29 1 7.2450 -9.9994 -5.3093 30 6 4.2696 -2.9812 0.4223 31 6 4.7400 -1.5816 0.0085 32 1 -0.3634 -0.0004 -1.0276 33 1 -0.3634 -0.8897 0.5142 34 1 -0.3633 0.8902 0.5134 35 1 4.4106 1.3707 0.0029 36 1 1.0312 -2.6847 -0.7148 37 1 1.5166 -2.8276 0.9945 38 1 2.0858 -7.2851 -0.2694 39 1 3.8124 -7.7280 -0.2126 40 1 1.4880 -7.4759 -3.7883 41 1 1.2319 -6.4427 -2.3501 42 1 2.8264 -5.8517 -4.7195 43 1 2.5716 -4.8171 -3.2810 44 1 5.4645 -5.7261 -1.3526 45 1 4.5206 -4.3361 -1.9488 46 1 7.7742 -6.6082 -3.4917 47 1 3.9957 -2.9746 1.4773 48 1 5.0750 -3.6977 0.2608 49 1 5.4817 -1.2175 0.7194 50 1 5.1762 -1.6219 -0.9896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029440447.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:18 Heat of formation + Delta-G solvation = 59.595768 kcal Electronic energy + Delta-G solvation = -31981.001870 eV Core-core repulsion = 28009.769497 eV Total energy + Delta-G solvation = -3971.232373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.56912 -41.60372 -39.57596 -37.13059 -35.36974 -34.57827 -34.19001 -32.30733 -31.20426 -31.03000 -30.62205 -27.86771 -27.46876 -25.91303 -25.35996 -24.46259 -23.33295 -21.86755 -21.34741 -21.04161 -20.20185 -19.54647 -18.73299 -17.77766 -17.46656 -16.98319 -16.78392 -16.49748 -16.17619 -15.66094 -15.31512 -15.21885 -15.05829 -14.66857 -14.60688 -14.41799 -14.31570 -14.26284 -13.78929 -13.66566 -13.51945 -13.29546 -13.19398 -13.16801 -12.93336 -12.73743 -12.66670 -12.55047 -12.49779 -11.99982 -11.86346 -11.77979 -11.70425 -11.46332 -11.43771 -11.37696 -11.09969 -10.83443 -10.48312 -10.18398 -9.67597 -9.12905 -8.64963 -7.82492 -5.16452 0.89581 1.52039 1.53240 1.57802 1.58728 1.69554 1.86688 2.16582 2.54049 3.36053 3.37223 3.52664 3.60771 3.76654 3.78824 3.94885 4.12355 4.14292 4.17835 4.25385 4.31321 4.35246 4.37758 4.40343 4.46605 4.52097 4.56722 4.63419 4.65146 4.68211 4.75930 4.85501 4.91915 4.96091 5.02592 5.05589 5.06933 5.10700 5.16680 5.19573 5.32155 5.38146 5.40352 5.41133 5.58499 5.65865 5.78116 5.88027 6.11995 6.27548 6.62630 6.75990 7.12289 7.24233 7.75907 8.55652 9.28941 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.003183 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.104414 B = 8794.399888 C = 9574.869789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.374 5.374 3 N -0.333 5.333 4 C 0.051 3.949 5 C -0.252 4.252 6 C 0.082 3.918 7 C -0.028 4.028 8 C -0.090 4.090 9 H 0.106 0.894 10 C 0.518 3.482 11 O -0.587 6.587 12 N -0.588 5.588 13 C 0.109 3.891 14 C 0.129 3.871 15 H 0.081 0.919 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.162 3.838 19 H 0.087 0.913 20 C 0.119 3.881 21 N -0.604 5.604 22 C -0.238 4.238 23 H 0.072 0.928 24 C -0.046 4.046 25 N -0.929 5.929 26 Si 0.966 3.034 27 H -0.295 1.295 28 H -0.285 1.285 29 H -0.284 1.284 30 C -0.104 4.104 31 C -0.030 4.030 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.206 0.794 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.250 0.750 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 12.459 4.444 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.156 5.156 3 N -0.155 5.155 4 C -0.133 4.133 5 C -0.263 4.263 6 C -0.047 4.047 7 C -0.067 4.067 8 C -0.111 4.111 9 H 0.124 0.876 10 C 0.307 3.693 11 O -0.468 6.468 12 N -0.318 5.318 13 C -0.016 4.016 14 C 0.021 3.979 15 H 0.099 0.901 16 C -0.152 4.152 17 C -0.166 4.166 18 C 0.055 3.945 19 H 0.104 0.896 20 C -0.005 4.005 21 N -0.326 5.326 22 C -0.367 4.367 23 H 0.089 0.911 24 C -0.241 4.241 25 N -0.576 5.576 26 Si 0.796 3.204 27 H -0.221 1.221 28 H -0.211 1.211 29 H -0.211 1.211 30 C -0.142 4.142 31 C -0.068 4.068 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.223 0.777 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.108 0.892 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.722 13.249 4.778 17.701 hybrid contribution 1.503 -1.560 -0.243 2.180 sum -9.219 11.689 4.535 15.562 Atomic orbital electron populations 1.22150 0.72657 1.05625 1.04588 1.48462 1.07559 1.02969 1.56590 1.77437 1.02384 1.08538 1.27146 1.23998 0.95577 0.94768 0.98964 1.20173 0.94528 0.94234 1.17378 1.20955 0.91528 0.90622 1.01607 1.20001 0.97178 0.85761 1.03755 1.21224 0.97235 0.89536 1.03135 0.87614 1.20822 0.80338 0.88475 0.79666 1.90606 1.36257 1.83496 1.36489 1.47969 1.33959 1.06705 1.43157 1.22012 0.99607 0.81350 0.98671 1.22150 0.87268 0.97881 0.90593 0.90145 1.22377 0.96898 0.97061 0.98834 1.22620 0.96193 0.98169 0.99582 1.21902 0.94719 0.83605 0.94287 0.89562 1.22325 0.87518 0.99249 0.91378 1.45336 1.15338 1.04582 1.67358 1.19182 0.88701 0.88231 1.40551 0.91071 1.25406 0.97862 0.98119 1.02750 1.69946 1.18201 1.15888 1.53533 0.85356 0.78406 0.78486 0.78157 1.22069 1.21122 1.21080 1.21509 0.95640 0.97889 0.99203 1.19946 0.93773 0.90476 1.02598 0.89510 0.88036 0.88473 0.77694 0.89120 0.89200 0.90042 0.94344 0.91767 0.91617 0.92543 0.91210 0.93232 0.89125 0.94116 0.91720 0.91268 0.89213 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 11.32 127.77 1.45 2.73 16 2 N -0.37 -8.45 4.00 -356.02 -1.43 -9.87 16 3 N -0.33 -8.41 12.59 -57.28 -0.72 -9.14 16 4 C 0.05 1.12 12.00 85.06 1.02 2.14 16 5 C -0.25 -5.72 5.91 -20.14 -0.12 -5.84 16 6 C 0.08 1.91 6.73 41.64 0.28 2.19 16 7 C -0.03 -0.63 4.83 30.01 0.14 -0.48 16 8 C -0.09 -2.25 1.64 -11.38 -0.02 -2.27 16 9 H 0.11 2.54 6.45 -2.39 -0.02 2.53 16 10 C 0.52 16.60 6.79 87.66 0.60 17.19 16 11 O -0.59 -21.67 15.37 -3.02 -0.05 -21.71 16 12 N -0.59 -20.48 2.23 -817.04 -1.82 -22.30 16 13 C 0.11 4.04 5.84 86.71 0.51 4.55 16 14 C 0.13 4.87 4.32 45.47 0.20 5.07 16 15 H 0.08 2.95 8.14 -2.39 -0.02 2.94 16 16 C -0.11 -3.66 6.18 31.56 0.20 -3.46 16 17 C -0.13 -4.24 6.21 31.70 0.20 -4.05 16 18 C 0.16 6.67 3.13 45.62 0.14 6.82 16 19 H 0.09 4.13 6.42 -2.39 -0.02 4.12 16 20 C 0.12 4.40 5.03 86.55 0.44 4.84 16 21 N -0.60 -27.60 2.81 -635.92 -1.78 -29.39 16 22 C -0.24 -12.20 10.37 84.03 0.87 -11.33 16 23 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 24 C -0.05 -2.39 5.41 84.86 0.46 -1.93 16 25 N -0.93 -49.02 10.39 21.65 0.23 -48.80 16 26 Si 0.97 42.91 29.56 68.60 2.03 44.94 16 27 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 30 C -0.10 -2.47 4.96 30.75 0.15 -2.32 16 31 C -0.03 -0.60 6.28 30.01 0.19 -0.41 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.13 7.90 -2.39 -0.02 1.11 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.21 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 2.20 7.52 -2.39 -0.02 2.18 16 38 H 0.08 2.88 7.14 -2.39 -0.02 2.86 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.99 7.84 -2.38 -0.02 1.97 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.04 7.84 -2.39 -0.02 2.02 16 44 H 0.05 2.21 7.77 -2.39 -0.02 2.19 16 45 H 0.09 2.82 5.42 -2.39 -0.01 2.80 16 46 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 47 H 0.06 1.59 8.11 -2.39 -0.02 1.57 16 48 H 0.07 1.77 7.41 -2.39 -0.02 1.76 16 49 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -63.60 382.54 4.09 -59.51 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.94 Total: 23.33 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 6.69 Total: 13.43 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -5.53 Total: -119.50 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -63.60 4.09 -59.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029440447.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.110 kcal (2) G-P(sol) polarization free energy of solvation -63.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds