Wall clock time and date at job start Wed Apr 1 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47562 * 2 1 4 4 C 1.46495 * 120.00618 * 89.99468 * 3 2 1 5 5 C 1.53003 * 109.46960 * 90.00343 * 4 3 2 6 6 C 1.38466 * 119.99408 * 269.72998 * 3 2 1 7 7 C 1.39396 * 119.53997 * 4.71528 * 6 3 2 8 8 C 1.36862 * 119.37581 * 179.76980 * 7 6 3 9 9 C 1.40344 * 118.49120 * 0.49825 * 8 7 6 10 10 C 1.47546 * 120.47609 * 179.72220 * 9 8 7 11 11 O 1.21585 * 120.00363 * 172.45910 * 10 9 8 12 12 N 1.34778 * 119.99856 * 352.46255 * 10 9 8 13 13 C 1.47873 * 126.94404 * 4.63366 * 12 10 9 14 14 C 1.56014 * 105.10479 * 181.98169 * 13 12 10 15 15 H 1.08999 * 116.25173 * 159.68660 * 14 13 12 16 16 C 1.57078 * 99.60523 * 32.80741 * 14 13 12 17 17 C 1.49287 * 126.94790 * 184.32536 * 12 10 9 18 18 H 1.09001 * 116.14934 * 15.85589 * 17 12 10 19 19 C 1.55482 * 104.35439 * 246.78067 * 17 12 10 20 20 N 1.47875 * 105.17055 * 288.90210 * 19 17 12 21 21 C 1.36928 * 126.94424 * 181.92614 * 20 19 17 22 22 H 1.07999 * 119.99689 * 179.97438 * 21 20 19 23 23 C 1.38810 * 120.00426 * 359.97438 * 21 20 19 24 24 N 1.31620 * 119.99833 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00245 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47356 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46954 * 120.00288 * 25 23 21 28 28 H 1.48493 * 109.47407 * 240.00349 * 25 23 21 29 29 C 1.39565 * 119.05332 * 359.75002 * 9 8 7 30 30 N 1.31680 * 120.51649 * 359.97438 * 29 9 8 31 31 H 1.09004 * 109.47503 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46954 * 300.00189 * 1 2 3 33 33 H 1.08997 * 109.47213 * 60.00126 * 1 2 3 34 34 H 1.08996 * 109.47182 * 239.99772 * 2 1 3 35 35 H 1.09003 * 109.47170 * 119.99415 * 2 1 3 36 36 H 1.08995 * 109.47731 * 210.00303 * 4 3 2 37 37 H 1.09005 * 109.46999 * 330.00854 * 4 3 2 38 38 H 1.08998 * 109.46995 * 60.00109 * 5 4 3 39 39 H 1.08994 * 109.47085 * 180.02562 * 5 4 3 40 40 H 1.09008 * 109.47162 * 300.00391 * 5 4 3 41 41 H 1.07992 * 120.31302 * 0.02562 * 7 6 3 42 42 H 1.08000 * 120.75019 * 180.25306 * 8 7 6 43 43 H 1.08995 * 110.31733 * 300.89519 * 13 12 10 44 44 H 1.09006 * 110.30888 * 63.07494 * 13 12 10 45 45 H 1.08996 * 112.36964 * 64.27648 * 16 14 13 46 46 H 1.09005 * 112.36991 * 191.71503 * 16 14 13 47 47 H 1.09001 * 110.35033 * 169.93753 * 19 17 12 48 48 H 1.09000 * 110.30160 * 47.83866 * 19 17 12 49 49 H 0.96995 * 119.99925 * 179.97438 * 24 23 21 50 50 H 1.07998 * 119.74282 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2686 5 6 3.7075 1.8315 1.7103 6 6 2.2545 2.0319 -1.1992 7 6 1.9314 1.4003 -2.3991 8 6 2.1618 2.0484 -3.5823 9 6 2.7293 3.3314 -3.5433 10 6 3.0020 4.0673 -4.7928 11 8 3.3643 5.2271 -4.7486 12 7 2.8495 3.4539 -5.9831 13 6 2.3295 2.0900 -6.2199 14 6 2.4198 1.8828 -7.7636 15 1 2.4128 0.8503 -8.1127 16 6 3.7042 2.7344 -8.0677 17 6 3.1654 4.0162 -7.3294 18 1 3.7987 4.9033 -7.3430 19 6 1.7811 4.1555 -8.0235 20 7 1.3520 2.7702 -8.3126 21 6 0.2070 2.3802 -8.9541 22 1 0.0043 1.3304 -9.1067 23 6 -0.6934 3.3340 -9.4085 24 7 -0.4461 4.6134 -9.2230 25 14 -2.2552 2.8020 -10.2843 26 1 -2.2967 1.3198 -10.3658 27 1 -3.4370 3.2890 -9.5284 28 1 -2.2738 3.3741 -11.6545 29 6 3.0326 3.9011 -2.3059 30 7 2.7896 3.2451 -1.1902 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0956 3.1411 1.1383 37 1 1.5817 1.6878 2.0283 38 1 4.3883 2.2155 0.9506 39 1 3.8891 2.3450 2.6544 40 1 3.8745 0.7622 1.8407 41 1 1.4995 0.4105 -2.3950 42 1 1.9161 1.5815 -4.5247 43 1 2.9459 1.3548 -5.7027 44 1 1.2937 2.0171 -5.8882 45 1 4.5960 2.3236 -7.5944 46 1 3.8481 2.9015 -9.1352 47 1 1.8766 4.7231 -8.9492 48 1 1.0698 4.6402 -7.3548 49 1 -1.0751 5.2800 -9.5408 50 1 3.4692 4.8879 -2.2629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032813747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:54 Heat of formation + Delta-G solvation = 91.034365 kcal Electronic energy + Delta-G solvation = -30808.481560 eV Core-core repulsion = 26838.612467 eV Total energy + Delta-G solvation = -3969.869093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.76813 -39.81140 -37.94187 -36.95042 -33.91265 -33.05224 -32.26966 -31.28462 -31.05733 -29.16124 -28.69541 -28.24874 -25.43287 -24.58808 -24.35203 -23.24708 -22.91350 -21.08962 -20.67167 -19.80785 -18.92311 -17.51661 -17.39371 -16.81958 -16.27862 -15.73004 -15.40768 -15.11334 -14.92302 -14.67845 -14.50500 -14.05178 -13.90351 -13.64873 -13.49711 -13.36862 -13.26680 -12.89357 -12.76785 -12.46059 -12.11580 -12.01411 -11.97944 -11.84238 -11.68314 -11.39383 -11.30403 -11.19302 -11.02905 -10.88911 -10.68353 -10.60168 -10.22177 -10.07807 -10.03758 -9.77959 -9.71149 -9.64374 -9.22230 -8.70149 -8.04857 -7.64505 -6.93532 -5.77885 -3.12822 1.04222 1.40796 2.66994 3.26475 3.35942 3.40676 3.43008 3.44311 4.10744 4.36464 4.40250 4.59520 4.76632 4.82211 4.84110 4.94612 4.99955 5.07077 5.11996 5.13696 5.15664 5.21935 5.24111 5.36047 5.39476 5.49055 5.53614 5.55753 5.59314 5.72438 5.75887 5.77725 5.83953 5.87611 5.98252 6.02234 6.09530 6.21873 6.27718 6.39620 6.43235 6.54733 6.57720 6.69474 6.78444 7.21697 7.41991 7.49993 7.72241 8.04045 8.08686 8.14884 8.65011 9.08677 9.69714 10.38556 11.34000 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.002886 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.632587 B = 9698.421697 C =10789.122236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.120 3.880 3 N -0.604 5.604 4 C 0.124 3.876 5 C -0.166 4.166 6 C 0.416 3.584 7 C -0.246 4.246 8 C -0.031 4.031 9 C -0.238 4.238 10 C 0.582 3.418 11 O -0.557 6.557 12 N -0.602 5.602 13 C 0.075 3.925 14 C 0.139 3.861 15 H 0.107 0.893 16 C -0.150 4.150 17 C 0.101 3.899 18 H 0.115 0.885 19 C 0.172 3.828 20 N -0.597 5.597 21 C -0.233 4.233 22 H 0.081 0.919 23 C -0.005 4.005 24 N -0.917 5.917 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.206 3.794 30 N -0.547 5.547 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.134 0.866 42 H 0.167 0.833 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.254 0.746 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 -10.790 18.121 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.004 4.004 3 N -0.317 5.317 4 C 0.001 3.999 5 C -0.224 4.224 6 C 0.181 3.819 7 C -0.271 4.271 8 C -0.056 4.056 9 C -0.246 4.246 10 C 0.372 3.628 11 O -0.437 6.437 12 N -0.334 5.334 13 C -0.050 4.050 14 C 0.030 3.970 15 H 0.125 0.875 16 C -0.190 4.190 17 C -0.002 4.002 18 H 0.133 0.867 19 C 0.047 3.953 20 N -0.321 5.321 21 C -0.361 4.361 22 H 0.099 0.901 23 C -0.202 4.202 24 N -0.563 5.563 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.047 3.953 30 N -0.264 5.264 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.151 0.849 42 H 0.184 0.816 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.217 -9.748 19.072 22.602 hybrid contribution -1.255 -0.594 -1.108 1.776 sum 5.962 -10.342 17.965 21.569 Atomic orbital electron populations 1.22250 0.95895 1.02288 1.02892 1.21483 0.94345 0.81480 1.03056 1.46489 1.69081 1.13162 1.02920 1.21337 0.96010 0.98549 0.83963 1.22138 0.97566 1.01264 1.01477 1.18560 0.88623 0.88771 0.85925 1.21157 1.11292 1.03033 0.91602 1.22606 0.89990 0.92756 1.00250 1.20631 1.11321 0.97535 0.95135 1.17550 0.77555 0.85689 0.82051 1.90730 1.49693 1.16396 1.86913 1.49031 1.62483 1.16349 1.05546 1.23653 0.98036 0.82921 1.00379 1.23240 0.88833 0.95539 0.89431 0.87483 1.24203 0.97323 0.96822 1.00628 1.24306 0.99471 0.96526 0.79865 0.86746 1.21847 0.89051 0.86684 0.97723 1.45260 1.19833 1.00603 1.66403 1.19074 0.95025 0.92407 1.29556 0.90098 1.24830 0.98961 0.95356 1.01100 1.69931 1.36655 0.99101 1.50656 0.86054 0.83054 0.77582 0.79066 1.20466 1.21801 1.21727 1.22619 0.89707 0.97660 0.85333 1.67341 1.19784 1.08175 1.31122 0.91447 0.92405 0.91918 0.90269 0.90390 0.89691 0.91338 0.91951 0.91942 0.93156 0.84870 0.81642 0.92171 0.90425 0.91574 0.89714 0.92561 0.93368 0.93604 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.21 37.15 0.38 -0.81 16 2 C 0.12 0.84 5.75 -4.05 -0.02 0.82 16 3 N -0.60 -5.93 2.57 -173.87 -0.45 -6.38 16 4 C 0.12 1.07 6.09 -4.04 -0.02 1.05 16 5 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16 6 C 0.42 5.30 7.36 -155.27 -1.14 4.16 16 7 C -0.25 -3.03 9.06 -39.65 -0.36 -3.39 16 8 C -0.03 -0.44 8.75 -39.29 -0.34 -0.78 16 9 C -0.24 -3.90 5.89 -104.82 -0.62 -4.52 16 10 C 0.58 11.23 7.85 -12.46 -0.10 11.13 16 11 O -0.56 -12.27 16.75 5.29 0.09 -12.18 16 12 N -0.60 -11.22 2.95 -158.11 -0.47 -11.69 16 13 C 0.08 1.24 4.24 -1.68 -0.01 1.23 16 14 C 0.14 2.47 5.53 -62.55 -0.35 2.13 16 15 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 16 C -0.15 -2.49 6.83 -22.11 -0.15 -2.64 16 17 C 0.10 1.95 5.22 -62.65 -0.33 1.62 16 18 H 0.11 2.16 8.07 -51.93 -0.42 1.75 16 19 C 0.17 4.11 4.75 -1.97 -0.01 4.10 16 20 N -0.60 -14.05 3.02 -156.68 -0.47 -14.52 16 21 C -0.23 -6.08 10.37 -15.06 -0.16 -6.23 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 24 N -0.92 -26.62 10.56 55.49 0.59 -26.04 16 25 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.21 3.18 10.76 -17.12 -0.18 2.99 16 30 N -0.55 -7.83 9.13 -12.14 -0.11 -7.95 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 34 H 0.08 0.53 6.33 -51.93 -0.33 0.20 16 35 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 36 H 0.08 0.87 7.44 -51.93 -0.39 0.48 16 37 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 41 H 0.13 1.30 6.18 -52.49 -0.32 0.98 16 42 H 0.17 2.24 3.01 -52.50 -0.16 2.08 16 43 H 0.06 0.80 6.76 -51.93 -0.35 0.45 16 44 H 0.08 1.39 6.95 -51.93 -0.36 1.03 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.06 1.48 7.46 -51.93 -0.39 1.09 16 48 H 0.05 1.34 7.67 -51.93 -0.40 0.94 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.17 2.45 7.67 -52.49 -0.40 2.05 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -32.46 393.28 -10.75 -43.21 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.70 Total: 3.44 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -3.13 Total: 9.68 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.91 Total: -66.58 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.46 -10.75 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032813747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.242 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds