Wall clock time and date at job start Wed Apr 1 2020 03:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47562 * 2 1 4 4 C 1.46495 * 120.00618 * 89.99468 * 3 2 1 5 5 C 1.53003 * 109.46960 * 90.00343 * 4 3 2 6 6 C 1.38466 * 119.99408 * 269.72998 * 3 2 1 7 7 C 1.39396 * 119.53997 * 4.71528 * 6 3 2 8 8 C 1.36862 * 119.37581 * 179.76980 * 7 6 3 9 9 C 1.40344 * 118.49120 * 0.49825 * 8 7 6 10 10 C 1.47546 * 120.47609 * 179.72220 * 9 8 7 11 11 O 1.21585 * 120.00363 * 172.45910 * 10 9 8 12 12 N 1.34778 * 119.99856 * 352.46255 * 10 9 8 13 13 C 1.47873 * 126.94404 * 4.63366 * 12 10 9 14 14 C 1.56014 * 105.10479 * 181.98169 * 13 12 10 15 15 H 1.08999 * 116.25173 * 159.68660 * 14 13 12 16 16 C 1.57078 * 99.60523 * 32.80741 * 14 13 12 17 17 C 1.49287 * 126.94790 * 184.32536 * 12 10 9 18 18 H 1.09001 * 116.14934 * 15.85589 * 17 12 10 19 19 C 1.55482 * 104.35439 * 246.78067 * 17 12 10 20 20 N 1.47875 * 105.17055 * 288.90210 * 19 17 12 21 21 C 1.36928 * 126.94424 * 181.92614 * 20 19 17 22 22 H 1.07999 * 119.99689 * 179.97438 * 21 20 19 23 23 C 1.38810 * 120.00426 * 359.97438 * 21 20 19 24 24 N 1.31620 * 119.99833 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00245 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47356 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46954 * 120.00288 * 25 23 21 28 28 H 1.48493 * 109.47407 * 240.00349 * 25 23 21 29 29 C 1.39565 * 119.05332 * 359.75002 * 9 8 7 30 30 N 1.31680 * 120.51649 * 359.97438 * 29 9 8 31 31 H 1.09004 * 109.47503 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46954 * 300.00189 * 1 2 3 33 33 H 1.08997 * 109.47213 * 60.00126 * 1 2 3 34 34 H 1.08996 * 109.47182 * 239.99772 * 2 1 3 35 35 H 1.09003 * 109.47170 * 119.99415 * 2 1 3 36 36 H 1.08995 * 109.47731 * 210.00303 * 4 3 2 37 37 H 1.09005 * 109.46999 * 330.00854 * 4 3 2 38 38 H 1.08998 * 109.46995 * 60.00109 * 5 4 3 39 39 H 1.08994 * 109.47085 * 180.02562 * 5 4 3 40 40 H 1.09008 * 109.47162 * 300.00391 * 5 4 3 41 41 H 1.07992 * 120.31302 * 0.02562 * 7 6 3 42 42 H 1.08000 * 120.75019 * 180.25306 * 8 7 6 43 43 H 1.08995 * 110.31733 * 300.89519 * 13 12 10 44 44 H 1.09006 * 110.30888 * 63.07494 * 13 12 10 45 45 H 1.08996 * 112.36964 * 64.27648 * 16 14 13 46 46 H 1.09005 * 112.36991 * 191.71503 * 16 14 13 47 47 H 1.09001 * 110.35033 * 169.93753 * 19 17 12 48 48 H 1.09000 * 110.30160 * 47.83866 * 19 17 12 49 49 H 0.96995 * 119.99925 * 179.97438 * 24 23 21 50 50 H 1.07998 * 119.74282 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2686 5 6 3.7075 1.8315 1.7103 6 6 2.2545 2.0319 -1.1992 7 6 1.9314 1.4003 -2.3991 8 6 2.1618 2.0484 -3.5823 9 6 2.7293 3.3314 -3.5433 10 6 3.0020 4.0673 -4.7928 11 8 3.3643 5.2271 -4.7486 12 7 2.8495 3.4539 -5.9831 13 6 2.3295 2.0900 -6.2199 14 6 2.4198 1.8828 -7.7636 15 1 2.4128 0.8503 -8.1127 16 6 3.7042 2.7344 -8.0677 17 6 3.1654 4.0162 -7.3294 18 1 3.7987 4.9033 -7.3430 19 6 1.7811 4.1555 -8.0235 20 7 1.3520 2.7702 -8.3126 21 6 0.2070 2.3802 -8.9541 22 1 0.0043 1.3304 -9.1067 23 6 -0.6934 3.3340 -9.4085 24 7 -0.4461 4.6134 -9.2230 25 14 -2.2552 2.8020 -10.2843 26 1 -2.2967 1.3198 -10.3658 27 1 -3.4370 3.2890 -9.5284 28 1 -2.2738 3.3741 -11.6545 29 6 3.0326 3.9011 -2.3059 30 7 2.7896 3.2451 -1.1902 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0956 3.1411 1.1383 37 1 1.5817 1.6878 2.0283 38 1 4.3883 2.2155 0.9506 39 1 3.8891 2.3450 2.6544 40 1 3.8745 0.7622 1.8407 41 1 1.4995 0.4105 -2.3950 42 1 1.9161 1.5815 -4.5247 43 1 2.9459 1.3548 -5.7027 44 1 1.2937 2.0171 -5.8882 45 1 4.5960 2.3236 -7.5944 46 1 3.8481 2.9015 -9.1352 47 1 1.8766 4.7231 -8.9492 48 1 1.0698 4.6402 -7.3548 49 1 -1.0751 5.2800 -9.5408 50 1 3.4692 4.8879 -2.2629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032813747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:53 Heat of formation + Delta-G solvation = 72.559849 kcal Electronic energy + Delta-G solvation = -30809.282675 eV Core-core repulsion = 26838.612467 eV Total energy + Delta-G solvation = -3970.670208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.02878 -41.09068 -39.31444 -37.97696 -35.59516 -34.26830 -33.34015 -32.55507 -32.10329 -30.68253 -30.30772 -29.24749 -27.08957 -25.95032 -25.27584 -24.56146 -23.81864 -22.37507 -21.79567 -21.25383 -20.47552 -19.02956 -18.35715 -18.09573 -17.71265 -17.15917 -16.77708 -16.29197 -16.13373 -15.87372 -15.67208 -15.50775 -15.11896 -14.85657 -14.66349 -14.40967 -14.34146 -13.91498 -13.74071 -13.55019 -13.48706 -13.30942 -13.17716 -13.05559 -12.81487 -12.79784 -12.74764 -12.60450 -12.22481 -12.13566 -11.95748 -11.94190 -11.88527 -11.74536 -11.52132 -11.11967 -11.07258 -10.79323 -10.76897 -10.36113 -9.57296 -8.88837 -8.59498 -7.82619 -5.18594 -0.10965 0.34311 1.47875 1.48271 1.58562 1.85046 1.91003 2.03060 2.49616 2.93773 3.33525 3.37866 3.42772 3.63991 3.75572 3.83785 3.90875 4.00356 4.05176 4.10617 4.16017 4.21118 4.25736 4.27059 4.49221 4.50740 4.53646 4.58254 4.61387 4.74112 4.79504 4.80799 4.86711 4.91858 4.99223 5.01515 5.04567 5.08224 5.15537 5.17436 5.24747 5.32790 5.38386 5.46744 5.47344 5.58927 5.67929 5.99582 6.11153 6.30762 6.64563 7.04018 7.04815 7.16872 7.72701 8.43160 9.28651 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.002886 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.632587 B = 9698.421697 C =10789.122236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.113 3.887 3 N -0.597 5.597 4 C 0.119 3.881 5 C -0.158 4.158 6 C 0.412 3.588 7 C -0.238 4.238 8 C -0.031 4.031 9 C -0.262 4.262 10 C 0.575 3.425 11 O -0.598 6.598 12 N -0.605 5.605 13 C 0.082 3.918 14 C 0.135 3.865 15 H 0.142 0.858 16 C -0.127 4.127 17 C 0.101 3.899 18 H 0.112 0.888 19 C 0.186 3.814 20 N -0.615 5.615 21 C -0.225 4.225 22 H 0.100 0.900 23 C -0.074 4.074 24 N -0.958 5.958 25 Si 0.976 3.024 26 H -0.255 1.255 27 H -0.302 1.302 28 H -0.298 1.298 29 C 0.203 3.797 30 N -0.559 5.559 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.165 0.835 42 H 0.174 0.826 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.018 0.982 48 H -0.006 1.006 49 H 0.242 0.758 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.663 -15.427 20.004 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 N -0.308 5.308 4 C -0.003 4.003 5 C -0.217 4.217 6 C 0.175 3.825 7 C -0.262 4.262 8 C -0.055 4.055 9 C -0.271 4.271 10 C 0.367 3.633 11 O -0.482 6.482 12 N -0.337 5.337 13 C -0.042 4.042 14 C 0.029 3.971 15 H 0.160 0.840 16 C -0.166 4.166 17 C -0.002 4.002 18 H 0.130 0.870 19 C 0.060 3.940 20 N -0.340 5.340 21 C -0.354 4.354 22 H 0.118 0.882 23 C -0.267 4.267 24 N -0.608 5.608 25 Si 0.805 3.195 26 H -0.179 1.179 27 H -0.230 1.230 28 H -0.226 1.226 29 C 0.043 3.957 30 N -0.277 5.277 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.182 0.818 42 H 0.191 0.809 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.037 0.963 48 H 0.012 0.988 49 H 0.051 0.949 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.782 -14.493 20.999 26.675 hybrid contribution -1.429 0.765 -1.497 2.206 sum 6.353 -13.728 19.503 24.682 Atomic orbital electron populations 1.22214 0.95579 1.03271 1.01840 1.21784 0.94485 0.79837 1.04795 1.46851 1.67507 1.14108 1.02295 1.21468 0.97192 0.97606 0.84043 1.22059 0.96262 1.02093 1.01242 1.18921 0.87748 0.88352 0.87442 1.21419 1.10212 1.03985 0.90571 1.22629 0.89722 0.91830 1.01332 1.20417 1.14132 0.98802 0.93701 1.18079 0.76756 0.85404 0.83032 1.90691 1.51683 1.18235 1.87567 1.49089 1.62415 1.17188 1.04960 1.23640 0.98214 0.82691 0.99613 1.23695 0.87159 0.96435 0.89812 0.84017 1.24109 0.97986 0.94099 1.00407 1.24158 0.96854 0.98487 0.80737 0.86978 1.21416 0.90547 0.86802 0.95210 1.45514 1.20664 1.01431 1.66376 1.19596 0.95306 0.93033 1.27484 0.88249 1.25682 1.02417 0.95461 1.03113 1.70183 1.37496 1.00237 1.52843 0.85031 0.79035 0.78341 0.77071 1.17875 1.23027 1.22599 1.22544 0.89859 0.97668 0.85616 1.67373 1.20686 1.09199 1.30418 0.89466 0.92580 0.93853 0.89360 0.87876 0.91721 0.88655 0.94497 0.90592 0.91866 0.81785 0.80907 0.87458 0.91877 0.87798 0.89904 0.96343 0.98814 0.94869 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.21 71.98 0.73 -0.99 16 2 C 0.11 1.12 5.75 86.38 0.50 1.62 16 3 N -0.60 -10.03 2.57 -704.02 -1.81 -11.85 16 4 C 0.12 1.77 6.09 86.38 0.53 2.30 16 5 C -0.16 -2.15 10.24 71.98 0.74 -1.41 16 6 C 0.41 9.72 7.36 133.25 0.98 10.70 16 7 C -0.24 -5.19 9.06 22.23 0.20 -4.99 16 8 C -0.03 -0.81 8.75 22.46 0.20 -0.61 16 9 C -0.26 -8.60 5.89 -19.99 -0.12 -8.71 16 10 C 0.58 22.82 7.85 86.70 0.68 23.50 16 11 O -0.60 -27.82 16.75 -3.99 -0.07 -27.89 16 12 N -0.60 -22.54 2.95 -772.39 -2.28 -24.82 16 13 C 0.08 2.51 4.24 87.16 0.37 2.88 16 14 C 0.14 4.46 5.53 46.93 0.26 4.72 16 15 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 16 C -0.13 -3.90 6.83 33.59 0.23 -3.67 16 17 C 0.10 3.98 5.22 46.87 0.24 4.22 16 18 H 0.11 4.44 8.07 -2.39 -0.02 4.42 16 19 C 0.19 9.40 4.75 86.97 0.41 9.81 16 20 N -0.62 -29.02 3.02 -649.62 -1.96 -30.98 16 21 C -0.23 -11.71 10.37 84.03 0.87 -10.84 16 22 H 0.10 4.70 7.83 -2.91 -0.02 4.68 16 23 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 24 N -0.96 -58.84 10.56 21.65 0.23 -58.61 16 25 Si 0.98 45.07 29.55 68.60 2.03 47.09 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 29 C 0.20 6.40 10.76 85.04 0.92 7.32 16 30 N -0.56 -15.81 9.13 -192.31 -1.76 -17.56 16 31 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.04 0.62 8.07 -2.39 -0.02 0.60 16 34 H 0.09 0.76 6.33 -2.39 -0.02 0.75 16 35 H 0.10 0.59 8.07 -2.39 -0.02 0.57 16 36 H 0.06 1.25 7.44 -2.39 -0.02 1.24 16 37 H 0.10 0.94 8.07 -2.38 -0.02 0.92 16 38 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.16 2.50 6.18 -2.91 -0.02 2.48 16 42 H 0.17 4.20 3.01 -2.93 -0.01 4.19 16 43 H 0.11 2.37 6.76 -2.39 -0.02 2.35 16 44 H 0.06 2.16 6.95 -2.38 -0.02 2.15 16 45 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 47 H 0.02 1.05 7.46 -2.39 -0.02 1.03 16 48 H -0.01 -0.39 7.67 -2.39 -0.02 -0.40 16 49 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 50 H 0.16 5.02 7.67 -2.91 -0.02 5.00 16 Total: -1.00 -76.86 393.28 3.53 -73.34 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.94 Total: 19.12 kcal Atomic # 6 Polarization: 23.95 SS G_CDS: 8.20 Total: 32.16 kcal Atomic # 7 Polarization: -136.24 SS G_CDS: -7.58 Total: -143.82 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.07 Total: -27.89 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -76.86 3.53 -73.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032813747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.895 kcal (2) G-P(sol) polarization free energy of solvation -76.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds