Wall clock time and date at job start Wed Apr 1 2020 04:03:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 N 1.28444 * 125.19261 * 2 1
4 4 C 1.31077 * 110.96463 * 179.97438 * 3 2 1
5 5 C 1.39531 * 107.59750 * 359.76103 * 4 3 2
6 6 C 1.36662 * 125.19638 * 179.97438 * 2 1 3
7 7 C 1.47163 * 126.94164 * 0.02562 * 6 2 1
8 8 O 1.21621 * 120.00333 * 96.30429 * 7 6 2
9 9 N 1.34775 * 119.99477 * 276.30075 * 7 6 2
10 10 C 1.44341 * 116.40556 * 4.21905 * 9 7 6
11 11 C 1.50028 * 113.48716 * 186.59868 * 10 9 7
12 12 C 1.52976 * 112.44888 * 322.31076 * 11 10 9
13 13 H 1.09001 * 112.11167 * 293.64718 * 12 11 10
14 14 C 1.54011 * 110.05009 * 59.28215 * 12 11 10
15 15 H 1.08999 * 109.50734 * 187.34116 * 14 12 11
16 16 C 1.54480 * 101.62802 * 71.58708 * 14 12 11
17 17 C 1.54806 * 101.84925 * 38.95743 * 16 14 12
18 18 N 1.47406 * 107.07325 * 337.29678 * 17 16 14
19 19 C 1.36930 * 125.98413 * 176.68984 * 18 17 16
20 20 H 1.08004 * 120.00396 * 175.38374 * 19 18 17
21 21 C 1.38820 * 119.99963 * 355.37587 * 19 18 17
22 22 N 1.31616 * 119.99644 * 6.24295 * 21 19 18
23 23 Si 1.86798 * 119.99972 * 186.23986 * 21 19 18
24 24 H 1.48497 * 109.47069 * 94.99764 * 23 21 19
25 25 H 1.48500 * 109.47113 * 214.99416 * 23 21 19
26 26 H 1.48495 * 109.47350 * 334.99645 * 23 21 19
27 27 C 1.43998 * 116.39961 * 184.20046 * 9 7 6
28 28 C 1.50851 * 109.88246 * 179.70645 * 5 4 3
29 29 C 1.54427 * 105.23214 * 343.36234 * 28 5 4
30 30 C 1.51266 * 143.02498 * 180.02562 * 4 3 2
31 31 H 1.08999 * 109.47528 * 265.22609 * 1 2 3
32 32 H 1.09004 * 109.47370 * 25.22906 * 1 2 3
33 33 H 1.09000 * 109.47174 * 145.22776 * 1 2 3
34 34 H 1.09002 * 108.76258 * 308.52999 * 10 9 7
35 35 H 1.08996 * 108.76853 * 66.68750 * 10 9 7
36 36 H 1.09000 * 109.87874 * 200.63693 * 11 10 9
37 37 H 1.08996 * 107.34482 * 82.25630 * 11 10 9
38 38 H 1.09003 * 110.95049 * 280.82324 * 16 14 12
39 39 H 1.08994 * 110.95366 * 157.09988 * 16 14 12
40 40 H 1.08993 * 109.91482 * 217.93473 * 17 16 14
41 41 H 1.09005 * 109.90842 * 96.64924 * 17 16 14
42 42 H 0.96998 * 119.99945 * 179.97438 * 22 21 19
43 43 H 1.09003 * 108.13448 * 61.03933 * 27 9 7
44 44 H 1.09003 * 107.97139 * 304.40586 * 27 9 7
45 45 H 1.09004 * 110.46577 * 224.32021 * 28 5 4
46 46 H 1.09000 * 110.16153 * 102.24531 * 28 5 4
47 47 H 1.08996 * 110.78251 * 267.74529 * 29 28 5
48 48 H 1.09005 * 110.94063 * 144.38398 * 29 28 5
49 49 H 1.08998 * 110.28893 * 316.07349 * 30 4 3
50 50 H 1.09000 * 110.28367 * 78.07718 * 30 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2053 1.0497 0.0000
4 6 3.4758 0.7275 0.0005
5 6 3.5578 -0.6654 0.0065
6 6 2.2527 -1.1168 0.0005
7 6 1.8013 -2.5175 0.0006
8 8 1.7252 -3.1320 -1.0462
9 7 1.4723 -3.1192 1.1608
10 6 1.5006 -2.2922 2.3435
11 6 1.2781 -3.0582 3.6141
12 6 0.2439 -4.1735 3.4505
13 1 -0.7543 -3.7819 3.2548
14 6 0.7035 -5.1647 2.3651
15 1 -0.0944 -5.8794 2.1634
16 6 1.8725 -5.8834 3.0746
17 6 1.3311 -6.0219 4.5183
18 7 0.2976 -4.9857 4.6942
19 6 -0.4776 -4.8034 5.8082
20 1 -1.1562 -3.9649 5.8627
21 6 -0.3914 -5.6965 6.8675
22 7 0.5202 -6.6457 6.8553
23 14 -1.5691 -5.5508 8.3101
24 1 -2.7240 -6.4604 8.1000
25 1 -0.8657 -5.9253 9.5631
26 1 -2.0540 -4.1511 8.4139
27 6 1.1311 -4.5161 1.0833
28 6 5.0041 -1.0942 0.0001
29 6 5.7964 0.1573 -0.4369
30 6 4.8708 1.3124 0.0013
31 1 -0.3634 -0.0855 1.0241
32 1 -0.3634 0.9297 -0.4380
33 1 -0.3633 -0.8441 -0.5861
34 1 2.4633 -1.7834 2.3926
35 1 0.7137 -1.5420 2.2657
36 1 0.9495 -2.3809 4.4025
37 1 2.2336 -3.4980 3.9000
38 1 2.7754 -5.2731 3.0539
39 1 2.0550 -6.8622 2.6312
40 1 2.1383 -5.8665 5.2340
41 1 0.8932 -7.0104 4.6573
42 1 0.5808 -7.2695 7.5957
43 1 1.9976 -5.0564 0.7021
44 1 0.3217 -4.6250 0.3613
45 1 5.1577 -1.9063 -0.7106
46 1 5.3084 -1.4044 0.9997
47 1 5.9406 0.1660 -1.5172
48 1 6.7545 0.2119 0.0800
49 1 4.9350 2.1377 -0.7078
50 1 5.1372 1.6531 1.0019
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001036868451.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:03:23
Heat of formation + Delta-G solvation = 90.896896 kcal
Electronic energy + Delta-G solvation = -31545.057611 eV
Core-core repulsion = 27575.182557 eV
Total energy + Delta-G solvation = -3969.875054 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.85154 -40.42176 -38.36309 -37.11686 -35.54458 -32.95932 -32.34367 -31.82489
-31.02596 -29.56989 -28.50558 -27.61831 -26.63858 -25.20229 -24.08336 -22.87778
-22.44127 -21.38457 -20.44423 -20.17540 -19.20950 -17.78422 -17.66352 -16.96422
-16.58864 -16.20583 -15.86143 -15.54150 -15.21058 -14.83426 -14.65200 -14.25658
-14.04000 -13.85880 -13.59785 -13.15570 -13.10457 -12.95478 -12.88604 -12.77402
-12.62329 -12.03079 -11.96799 -11.77344 -11.54435 -11.53487 -11.37801 -11.20692
-11.05659 -10.85063 -10.80070 -10.49096 -10.20989 -10.12974 -10.06083 -9.90077
-9.73664 -9.66736 -9.07004 -8.68132 -8.65175 -8.54286 -6.93269 -5.78254
-3.11286 1.57193 1.97345 2.47601 2.56769 3.05009 3.35527 3.40879
3.43006 3.72311 4.24092 4.41931 4.61632 4.63188 4.80252 4.84623
4.94133 4.97015 5.02671 5.07800 5.11437 5.16872 5.19218 5.31824
5.46129 5.51193 5.53677 5.54448 5.59470 5.72806 5.76982 5.78695
5.81865 5.90925 5.93214 5.96956 5.99956 6.15431 6.19945 6.31235
6.37285 6.45932 6.50671 6.66406 6.70886 6.76291 6.95595 7.22776
7.47306 7.56746 7.76211 7.95878 7.99246 8.16646 9.13685 9.73700
10.41384 11.33498
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.016594 B = 0.002860 C = 0.002811
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1686.915589 B = 9788.927276 C = 9957.090055
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.089 3.911
2 N -0.274 5.274
3 N -0.268 5.268
4 C 0.007 3.993
5 C -0.186 4.186
6 C 0.000 4.000
7 C 0.579 3.421
8 O -0.525 6.525
9 N -0.573 5.573
10 C 0.119 3.881
11 C -0.140 4.140
12 C 0.170 3.830
13 H 0.063 0.937
14 C -0.109 4.109
15 H 0.087 0.913
16 C -0.140 4.140
17 C 0.177 3.823
18 N -0.600 5.600
19 C -0.230 4.230
20 H 0.077 0.923
21 C -0.005 4.005
22 N -0.919 5.919
23 Si 0.909 3.091
24 H -0.289 1.289
25 H -0.291 1.291
26 H -0.281 1.281
27 C 0.137 3.863
28 C -0.044 4.044
29 C -0.115 4.115
30 C -0.025 4.025
31 H 0.088 0.912
32 H 0.101 0.899
33 H 0.092 0.908
34 H 0.064 0.936
35 H 0.049 0.951
36 H 0.077 0.923
37 H 0.067 0.933
38 H 0.057 0.943
39 H 0.062 0.938
40 H 0.036 0.964
41 H 0.053 0.947
42 H 0.252 0.748
43 H 0.064 0.936
44 H 0.064 0.936
45 H 0.074 0.926
46 H 0.080 0.920
47 H 0.074 0.926
48 H 0.083 0.917
49 H 0.077 0.923
50 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.694 12.606 -14.199 20.133
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 N -0.062 5.062
3 N -0.098 5.098
4 C -0.153 4.153
5 C -0.196 4.196
6 C -0.127 4.127
7 C 0.363 3.637
8 O -0.400 6.400
9 N -0.305 5.305
10 C -0.004 4.004
11 C -0.181 4.181
12 C 0.062 3.938
13 H 0.081 0.919
14 C -0.128 4.128
15 H 0.105 0.895
16 C -0.179 4.179
17 C 0.052 3.948
18 N -0.324 5.324
19 C -0.358 4.358
20 H 0.095 0.905
21 C -0.202 4.202
22 N -0.565 5.565
23 Si 0.740 3.260
24 H -0.216 1.216
25 H -0.218 1.218
26 H -0.207 1.207
27 C 0.014 3.986
28 C -0.082 4.082
29 C -0.153 4.153
30 C -0.064 4.064
31 H 0.107 0.893
32 H 0.120 0.880
33 H 0.111 0.889
34 H 0.083 0.917
35 H 0.067 0.933
36 H 0.096 0.904
37 H 0.086 0.914
38 H 0.076 0.924
39 H 0.080 0.920
40 H 0.055 0.945
41 H 0.071 0.929
42 H 0.063 0.937
43 H 0.083 0.917
44 H 0.082 0.918
45 H 0.092 0.908
46 H 0.098 0.902
47 H 0.093 0.907
48 H 0.102 0.898
49 H 0.096 0.904
50 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 5.654 12.992 -14.429 20.223
hybrid contribution -0.281 -0.610 0.989 1.196
sum 5.373 12.382 -13.440 19.048
Atomic orbital electron populations
1.22203 0.72712 1.05594 1.04645 1.45664 1.07222 1.01046 1.52230
1.72656 1.02931 1.12739 1.21513 1.22705 0.92632 0.94224 1.05709
1.21067 0.93701 0.95527 1.09347 1.20413 0.90984 0.88813 1.12503
1.17218 0.77904 0.84489 0.84121 1.90819 1.52245 1.65567 1.31413
1.46701 1.65651 1.10809 1.07324 1.20579 1.00951 0.92906 0.85978
1.21839 1.02382 0.99456 0.94399 1.20992 0.95483 0.90336 0.87018
0.91899 1.21652 0.99559 0.98636 0.92982 0.89474 1.22989 0.96603
0.99085 0.99187 1.21291 0.90998 0.93299 0.89191 1.44963 1.42066
1.33812 1.11566 1.19031 1.15700 1.08301 0.92757 0.90478 1.24807
0.98978 0.97804 0.98618 1.69962 1.34586 1.19750 1.32247 0.86142
0.80444 0.77487 0.81941 1.21630 1.21776 1.20671 1.20162 1.00753
0.79358 0.98315 1.20364 0.87503 0.98198 1.02174 1.22371 0.97946
0.93179 1.01763 1.20396 0.85461 0.97974 1.02578 0.89344 0.88016
0.88940 0.91735 0.93320 0.90405 0.91447 0.92446 0.91954 0.94543
0.92866 0.93721 0.91735 0.91782 0.90767 0.90178 0.90707 0.89799
0.90394 0.89687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.81 10.95 59.85 0.66 1.46 16
2 N -0.27 -3.53 3.75 -63.94 -0.24 -3.77 16
3 N -0.27 -3.66 11.91 33.78 0.40 -3.26 16
4 C 0.01 0.08 8.13 -82.16 -0.67 -0.59 16
5 C -0.19 -2.45 6.99 -104.12 -0.73 -3.18 16
6 C 0.00 0.01 4.78 -82.14 -0.39 -0.39 16
7 C 0.58 8.82 6.90 -12.64 -0.09 8.74 16
8 O -0.53 -9.40 16.73 5.26 0.09 -9.31 16
9 N -0.57 -8.30 3.20 -182.37 -0.58 -8.88 16
10 C 0.12 1.66 5.22 -6.67 -0.03 1.63 16
11 C -0.14 -2.33 5.15 -28.22 -0.15 -2.48 16
12 C 0.17 3.17 3.66 -66.23 -0.24 2.93 16
13 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
14 C -0.11 -1.79 2.95 -90.86 -0.27 -2.06 16
15 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16
16 C -0.14 -2.48 5.65 -25.00 -0.14 -2.62 16
17 C 0.18 4.06 5.14 -2.59 -0.01 4.05 16
18 N -0.60 -14.21 2.91 -161.62 -0.47 -14.68 16
19 C -0.23 -6.07 10.30 -15.06 -0.16 -6.22 16
20 H 0.08 1.97 7.84 -52.48 -0.41 1.56 16
21 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16
22 N -0.92 -26.18 10.41 55.49 0.58 -25.60 16
23 Si 0.91 21.50 29.56 -169.99 -5.02 16.47 16
24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
27 C 0.14 2.02 5.11 -6.92 -0.04 1.99 16
28 C -0.04 -0.45 6.75 -27.06 -0.18 -0.63 16
29 C -0.11 -0.85 7.07 -25.26 -0.18 -1.03 16
30 C -0.03 -0.22 6.76 -26.89 -0.18 -0.40 16
31 H 0.09 0.70 7.42 -51.93 -0.39 0.32 16
32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.09 0.81 7.92 -51.93 -0.41 0.40 16
34 H 0.06 0.90 7.37 -51.93 -0.38 0.51 16
35 H 0.05 0.63 7.24 -51.93 -0.38 0.25 16
36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
37 H 0.07 1.21 6.51 -51.93 -0.34 0.88 16
38 H 0.06 0.98 7.21 -51.93 -0.37 0.61 16
39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16
40 H 0.04 0.93 7.74 -51.93 -0.40 0.53 16
41 H 0.05 1.37 7.19 -51.93 -0.37 1.00 16
42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
43 H 0.06 0.96 7.79 -51.93 -0.40 0.56 16
44 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16
45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
50 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16
LS Contribution 386.79 15.07 5.83 5.83
Total: -1.00 -32.39 386.79 -10.37 -42.76
By element:
Atomic # 1 Polarization: 7.54 SS G_CDS: -8.05 Total: -0.51 kcal
Atomic # 6 Polarization: 3.84 SS G_CDS: -2.89 Total: 0.95 kcal
Atomic # 7 Polarization: -55.87 SS G_CDS: -0.31 Total: -56.19 kcal
Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -32.39 -10.37 -42.76 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036868451.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 133.658 kcal
(2) G-P(sol) polarization free energy of solvation -32.390 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds