Wall clock time and date at job start Wed Apr 1 2020 03:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.62478 * 2 1 4 4 C 1.54319 * 110.70430 * 236.89359 * 2 1 3 5 5 N 1.47447 * 107.23043 * 219.33089 * 4 2 1 6 6 C 1.39001 * 110.99808 * 236.74766 * 5 4 2 7 7 C 1.39145 * 119.70373 * 180.02562 * 6 5 4 8 8 C 1.38298 * 119.09547 * 179.97438 * 7 6 5 9 9 C 1.38883 * 118.50635 * 359.97438 * 8 7 6 10 10 C 1.38020 * 119.33167 * 0.02562 * 9 8 7 11 11 N 1.31976 * 120.85516 * 359.71862 * 10 9 8 12 12 C 1.47846 * 108.56648 * 359.00973 * 5 4 2 13 13 C 1.55113 * 104.90423 * 23.97533 * 12 5 4 14 14 H 1.08998 * 110.92787 * 81.16464 * 13 12 5 15 15 C 1.50701 * 111.14634 * 205.04831 * 13 12 5 16 16 O 1.21275 * 120.00296 * 112.24191 * 15 13 12 17 17 N 1.34780 * 119.99722 * 292.23823 * 15 13 12 18 18 C 1.46497 * 119.99954 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47254 * 180.02562 * 18 17 15 20 20 H 1.09005 * 112.96120 * 306.67622 * 19 18 17 21 21 C 1.53943 * 113.77004 * 175.00292 * 19 18 17 22 22 C 1.53952 * 86.28783 * 222.08843 * 21 19 18 23 23 N 1.47577 * 86.11747 * 23.60706 * 22 21 19 24 24 C 1.36937 * 134.49419 * 155.36241 * 23 22 21 25 25 H 1.08001 * 119.99756 * 179.97438 * 24 23 22 26 26 C 1.38807 * 119.99744 * 359.97438 * 24 23 22 27 27 N 1.31621 * 120.00160 * 0.02562 * 26 24 23 28 28 Si 1.86807 * 119.99976 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.46891 * 89.99935 * 28 26 24 30 30 H 1.48492 * 109.47145 * 210.00166 * 28 26 24 31 31 H 1.48502 * 109.46725 * 330.00418 * 28 26 24 32 32 H 1.09001 * 109.47002 * 179.29873 * 1 2 3 33 33 H 1.08993 * 109.46955 * 299.30311 * 1 2 3 34 34 H 1.09000 * 109.47050 * 59.30139 * 1 2 3 35 35 H 1.08991 * 109.89336 * 338.73823 * 4 2 1 36 36 H 1.09002 * 109.88804 * 99.93152 * 4 2 1 37 37 H 1.07997 * 120.44859 * 0.02562 * 7 6 5 38 38 H 1.08001 * 120.74702 * 180.02562 * 8 7 6 39 39 H 1.08004 * 120.33321 * 180.02562 * 9 8 7 40 40 H 1.07999 * 119.57380 * 180.02562 * 10 9 8 41 41 H 1.09006 * 110.37099 * 142.92149 * 12 5 4 42 42 H 1.08996 * 110.37966 * 265.15422 * 12 5 4 43 43 H 0.97003 * 120.00029 * 0.02562 * 17 15 13 44 44 H 1.09008 * 109.47268 * 300.00387 * 18 17 15 45 45 H 1.09001 * 109.47159 * 59.99993 * 18 17 15 46 46 H 1.08998 * 113.74196 * 336.43202 * 21 19 18 47 47 H 1.09001 * 113.74360 * 107.63842 * 21 19 18 48 48 H 1.09005 * 113.76600 * 137.91131 * 22 21 19 49 49 H 1.09000 * 113.76840 * 269.29950 * 22 21 19 50 50 H 0.97004 * 120.00075 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0757 -0.7884 -1.2092 5 7 3.2490 -1.5489 -0.7413 6 6 4.3766 -1.2367 -1.4918 7 6 5.5897 -1.8541 -1.2031 8 6 6.7034 -1.5344 -1.9582 9 6 6.5663 -0.6049 -2.9810 10 6 5.3325 -0.0311 -3.2122 11 7 4.2854 -0.3589 -2.4788 12 6 3.4652 -1.2476 0.6899 13 6 2.0786 -0.7925 1.2156 14 1 1.4460 -1.6515 1.4393 15 6 2.2206 0.0995 2.4220 16 8 1.9179 1.2715 2.3485 17 7 2.6839 -0.4054 3.5826 18 6 2.8224 0.4617 4.7551 19 6 3.3650 -0.3531 5.9309 20 1 2.7785 -1.2492 6.1339 21 6 3.6646 0.4894 7.1840 22 6 4.9503 -0.3469 7.3165 23 7 4.8198 -0.5932 5.8673 24 6 5.6964 -0.9152 4.8657 25 1 5.3377 -1.0453 3.8553 26 6 7.0459 -1.0743 5.1491 27 7 7.4828 -0.9162 6.3806 28 14 8.2418 -1.5129 3.7828 29 1 8.7718 -0.2682 3.1705 30 1 9.3651 -2.3057 4.3438 31 1 7.5392 -2.3133 2.7480 32 1 -0.3633 -1.0276 -0.0126 33 1 -0.3633 0.5029 0.8961 34 1 -0.3633 0.5246 -0.8837 35 1 1.3133 -1.4737 -1.5796 36 1 2.3721 -0.0980 -1.9988 37 1 5.6603 -2.5737 -0.4009 38 1 7.6581 -1.9979 -1.7575 39 1 7.4166 -0.3339 -3.5892 40 1 5.2214 0.6918 -4.0068 41 1 3.7985 -2.1402 1.2195 42 1 4.1945 -0.4456 0.8030 43 1 2.9263 -1.3429 3.6412 44 1 3.5128 1.2738 4.5270 45 1 1.8489 0.8756 5.0180 46 1 3.8462 1.5429 6.9714 47 1 2.9538 0.3362 7.9961 48 1 5.8295 0.2387 7.5852 49 1 4.8312 -1.2421 7.9268 50 1 8.4259 -1.0271 6.5786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038267877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:00 Heat of formation + Delta-G solvation = 70.057084 kcal Electronic energy + Delta-G solvation = -30877.719960 eV Core-core repulsion = 26906.941223 eV Total energy + Delta-G solvation = -3970.778736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.04248 -39.72442 -38.31181 -37.60427 -34.18023 -33.68270 -32.60861 -32.23024 -30.58082 -29.61183 -27.99793 -27.44263 -26.16406 -23.94704 -23.40715 -23.30862 -22.30878 -21.50349 -20.53599 -19.83546 -19.09094 -18.02471 -16.98136 -16.67833 -16.43493 -15.84863 -15.55872 -15.34759 -15.07305 -14.91713 -14.67660 -14.18864 -13.94062 -13.88382 -13.67625 -13.43117 -13.28890 -13.10579 -12.94281 -12.78034 -12.20892 -12.05918 -11.99476 -11.80577 -11.46081 -11.15543 -11.06593 -11.04207 -11.02238 -10.80040 -10.68128 -10.57211 -10.12288 -10.05447 -9.82876 -9.79725 -9.69691 -9.48762 -9.33325 -8.84419 -8.63146 -8.20826 -6.93451 -5.80707 -3.13087 1.02735 1.18910 2.82724 3.27802 3.32499 3.36066 3.39875 3.57242 3.80551 4.19967 4.37787 4.39576 4.54812 4.75057 4.81147 5.01559 5.05541 5.07577 5.09943 5.12381 5.20711 5.28517 5.36581 5.44645 5.58897 5.60816 5.63962 5.66419 5.67759 5.73168 5.81254 5.85789 5.88345 6.00593 6.06071 6.11811 6.13182 6.28238 6.28888 6.37670 6.43695 6.49075 6.58868 6.67814 6.84938 7.04592 7.20735 7.37644 7.55211 7.83804 7.86646 7.94115 8.49786 8.99673 9.66837 10.55513 11.36066 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008945 B = 0.004190 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.536736 B = 6681.606584 C = 9378.520816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.091 0.909 4 C 0.033 3.967 5 N -0.469 5.469 6 C 0.309 3.691 7 C -0.179 4.179 8 C -0.054 4.054 9 C -0.203 4.203 10 C 0.122 3.878 11 N -0.520 5.520 12 C 0.062 3.938 13 C -0.117 4.117 14 H 0.111 0.889 15 C 0.521 3.479 16 O -0.545 6.545 17 N -0.711 5.711 18 C 0.123 3.877 19 C 0.126 3.874 20 H 0.050 0.950 21 C -0.156 4.156 22 C 0.159 3.841 23 N -0.602 5.602 24 C -0.218 4.218 25 H 0.077 0.923 26 C -0.006 4.006 27 N -0.919 5.919 28 Si 0.904 3.096 29 H -0.289 1.289 30 H -0.290 1.290 31 H -0.281 1.281 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.155 0.845 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.403 0.597 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.027 0.973 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.044 -1.383 -13.864 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.109 0.891 4 C -0.094 4.094 5 N -0.186 5.186 6 C 0.077 3.923 7 C -0.202 4.202 8 C -0.080 4.080 9 C -0.224 4.224 10 C -0.035 4.035 11 N -0.234 5.234 12 C -0.064 4.064 13 C -0.139 4.139 14 H 0.129 0.871 15 C 0.305 3.695 16 O -0.423 6.423 17 N -0.361 5.361 18 C -0.002 4.002 19 C 0.019 3.981 20 H 0.067 0.933 21 C -0.195 4.195 22 C 0.034 3.966 23 N -0.329 5.329 24 C -0.345 4.345 25 H 0.095 0.905 26 C -0.203 4.203 27 N -0.566 5.566 28 Si 0.734 3.266 29 H -0.217 1.217 30 H -0.216 1.216 31 H -0.207 1.207 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.172 0.828 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.237 0.763 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.092 0.908 49 H 0.044 0.956 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.864 -0.785 -14.219 17.323 hybrid contribution 1.958 -0.646 -0.397 2.100 sum -7.906 -1.431 -14.617 16.679 Atomic orbital electron populations 1.21686 0.93703 1.01673 1.02317 1.22213 0.96894 1.00008 0.91889 0.89058 1.23142 0.90858 0.96876 0.98492 1.60763 1.02406 1.52357 1.03048 1.19919 0.90208 0.89838 0.92350 1.21649 0.92294 1.03166 1.03059 1.21509 0.98588 0.94888 0.92993 1.21991 0.99269 1.00479 1.00618 1.22509 0.87908 0.96719 0.96391 1.67401 1.33355 1.14205 1.08452 1.23087 0.96188 1.01722 0.85401 1.22600 0.97886 0.99314 0.94090 0.87137 1.20134 0.77235 0.88199 0.83899 1.90668 1.50380 1.16940 1.84276 1.46000 1.64991 1.14166 1.10960 1.21766 0.99911 0.93915 0.84571 1.22501 0.88044 0.95128 0.92478 0.93305 1.23773 0.99713 0.99772 0.96251 1.22197 0.94447 0.94650 0.85326 1.46065 1.00071 1.82192 1.04527 1.18897 0.87389 1.40476 0.87765 0.90482 1.24742 0.96782 1.02394 0.96375 1.69811 1.14020 1.55382 1.17354 0.86246 0.81266 0.77979 0.81063 1.21656 1.21648 1.20653 0.92588 0.91986 0.92330 0.90040 0.87887 0.84414 0.84633 0.84924 0.82797 0.88310 0.91722 0.76307 0.91046 0.92190 0.90546 0.92805 0.90834 0.95563 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.14 37.16 0.34 -1.09 16 2 C -0.09 -1.13 2.66 -88.80 -0.24 -1.37 16 3 H 0.09 1.37 7.38 -51.93 -0.38 0.98 16 4 C 0.03 0.40 6.37 -2.83 -0.02 0.38 16 5 N -0.47 -6.19 5.20 -169.86 -0.88 -7.08 16 6 C 0.31 4.30 6.15 -155.02 -0.95 3.35 16 7 C -0.18 -2.35 9.38 -39.22 -0.37 -2.72 16 8 C -0.05 -0.61 10.17 -39.32 -0.40 -1.01 16 9 C -0.20 -2.08 10.10 -39.42 -0.40 -2.48 16 10 C 0.12 1.36 11.17 -17.57 -0.20 1.16 16 11 N -0.52 -7.04 7.95 -12.44 -0.10 -7.14 16 12 C 0.06 0.84 5.55 -2.19 -0.01 0.83 16 13 C -0.12 -1.50 2.88 -89.52 -0.26 -1.76 16 14 H 0.11 1.20 8.05 -51.93 -0.42 0.79 16 15 C 0.52 8.36 7.16 -10.98 -0.08 8.28 16 16 O -0.54 -10.52 15.71 5.56 0.09 -10.44 16 17 N -0.71 -11.43 5.53 -60.29 -0.33 -11.76 16 18 C 0.12 2.16 5.54 -4.04 -0.02 2.14 16 19 C 0.13 2.35 4.33 -66.87 -0.29 2.06 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 21 C -0.16 -2.79 7.86 -25.80 -0.20 -2.99 16 22 C 0.16 3.57 7.51 -2.97 -0.02 3.55 16 23 N -0.60 -14.25 3.57 -170.74 -0.61 -14.86 16 24 C -0.22 -5.66 10.51 -15.06 -0.16 -5.82 16 25 H 0.08 1.91 7.80 -52.49 -0.41 1.50 16 26 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 27 N -0.92 -26.49 11.38 55.49 0.63 -25.85 16 28 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 32 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.89 7.80 -51.93 -0.41 0.49 16 36 H 0.10 1.34 5.91 -51.93 -0.31 1.04 16 37 H 0.14 1.73 7.98 -52.49 -0.42 1.32 16 38 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.06 1.02 7.67 -51.93 -0.40 0.63 16 43 H 0.40 6.06 8.47 -40.82 -0.35 5.72 16 44 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 1.85 7.15 -51.93 -0.37 1.48 16 49 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -32.04 404.25 -11.59 -43.63 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.08 Total: 8.74 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.37 Total: 2.24 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -1.29 Total: -66.69 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.04 -11.59 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038267877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.690 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds