Wall clock time and date at job start Wed Apr 1 2020 03:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.62478 * 2 1 4 4 C 1.54319 * 110.70430 * 236.89359 * 2 1 3 5 5 N 1.47447 * 107.23043 * 219.33089 * 4 2 1 6 6 C 1.39001 * 110.99808 * 236.74766 * 5 4 2 7 7 C 1.39145 * 119.70373 * 180.02562 * 6 5 4 8 8 C 1.38298 * 119.09547 * 179.97438 * 7 6 5 9 9 C 1.38883 * 118.50635 * 359.97438 * 8 7 6 10 10 C 1.38020 * 119.33167 * 0.02562 * 9 8 7 11 11 N 1.31976 * 120.85516 * 359.71862 * 10 9 8 12 12 C 1.47846 * 108.56648 * 359.00973 * 5 4 2 13 13 C 1.55113 * 104.90423 * 23.97533 * 12 5 4 14 14 H 1.08998 * 110.92787 * 81.16464 * 13 12 5 15 15 C 1.50701 * 111.14634 * 205.04831 * 13 12 5 16 16 O 1.21275 * 120.00296 * 112.24191 * 15 13 12 17 17 N 1.34780 * 119.99722 * 292.23823 * 15 13 12 18 18 C 1.46497 * 119.99954 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47254 * 180.02562 * 18 17 15 20 20 H 1.09005 * 112.96120 * 306.67622 * 19 18 17 21 21 C 1.53943 * 113.77004 * 175.00292 * 19 18 17 22 22 C 1.53952 * 86.28783 * 222.08843 * 21 19 18 23 23 N 1.47577 * 86.11747 * 23.60706 * 22 21 19 24 24 C 1.36937 * 134.49419 * 155.36241 * 23 22 21 25 25 H 1.08001 * 119.99756 * 179.97438 * 24 23 22 26 26 C 1.38807 * 119.99744 * 359.97438 * 24 23 22 27 27 N 1.31621 * 120.00160 * 0.02562 * 26 24 23 28 28 Si 1.86807 * 119.99976 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.46891 * 89.99935 * 28 26 24 30 30 H 1.48492 * 109.47145 * 210.00166 * 28 26 24 31 31 H 1.48502 * 109.46725 * 330.00418 * 28 26 24 32 32 H 1.09001 * 109.47002 * 179.29873 * 1 2 3 33 33 H 1.08993 * 109.46955 * 299.30311 * 1 2 3 34 34 H 1.09000 * 109.47050 * 59.30139 * 1 2 3 35 35 H 1.08991 * 109.89336 * 338.73823 * 4 2 1 36 36 H 1.09002 * 109.88804 * 99.93152 * 4 2 1 37 37 H 1.07997 * 120.44859 * 0.02562 * 7 6 5 38 38 H 1.08001 * 120.74702 * 180.02562 * 8 7 6 39 39 H 1.08004 * 120.33321 * 180.02562 * 9 8 7 40 40 H 1.07999 * 119.57380 * 180.02562 * 10 9 8 41 41 H 1.09006 * 110.37099 * 142.92149 * 12 5 4 42 42 H 1.08996 * 110.37966 * 265.15422 * 12 5 4 43 43 H 0.97003 * 120.00029 * 0.02562 * 17 15 13 44 44 H 1.09008 * 109.47268 * 300.00387 * 18 17 15 45 45 H 1.09001 * 109.47159 * 59.99993 * 18 17 15 46 46 H 1.08998 * 113.74196 * 336.43202 * 21 19 18 47 47 H 1.09001 * 113.74360 * 107.63842 * 21 19 18 48 48 H 1.09005 * 113.76600 * 137.91131 * 22 21 19 49 49 H 1.09000 * 113.76840 * 269.29950 * 22 21 19 50 50 H 0.97004 * 120.00075 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0757 -0.7884 -1.2092 5 7 3.2490 -1.5489 -0.7413 6 6 4.3766 -1.2367 -1.4918 7 6 5.5897 -1.8541 -1.2031 8 6 6.7034 -1.5344 -1.9582 9 6 6.5663 -0.6049 -2.9810 10 6 5.3325 -0.0311 -3.2122 11 7 4.2854 -0.3589 -2.4788 12 6 3.4652 -1.2476 0.6899 13 6 2.0786 -0.7925 1.2156 14 1 1.4460 -1.6515 1.4393 15 6 2.2206 0.0995 2.4220 16 8 1.9179 1.2715 2.3485 17 7 2.6839 -0.4054 3.5826 18 6 2.8224 0.4617 4.7551 19 6 3.3650 -0.3531 5.9309 20 1 2.7785 -1.2492 6.1339 21 6 3.6646 0.4894 7.1840 22 6 4.9503 -0.3469 7.3165 23 7 4.8198 -0.5932 5.8673 24 6 5.6964 -0.9152 4.8657 25 1 5.3377 -1.0453 3.8553 26 6 7.0459 -1.0743 5.1491 27 7 7.4828 -0.9162 6.3806 28 14 8.2418 -1.5129 3.7828 29 1 8.7718 -0.2682 3.1705 30 1 9.3651 -2.3057 4.3438 31 1 7.5392 -2.3133 2.7480 32 1 -0.3633 -1.0276 -0.0126 33 1 -0.3633 0.5029 0.8961 34 1 -0.3633 0.5246 -0.8837 35 1 1.3133 -1.4737 -1.5796 36 1 2.3721 -0.0980 -1.9988 37 1 5.6603 -2.5737 -0.4009 38 1 7.6581 -1.9979 -1.7575 39 1 7.4166 -0.3339 -3.5892 40 1 5.2214 0.6918 -4.0068 41 1 3.7985 -2.1402 1.2195 42 1 4.1945 -0.4456 0.8030 43 1 2.9263 -1.3429 3.6412 44 1 3.5128 1.2738 4.5270 45 1 1.8489 0.8756 5.0180 46 1 3.8462 1.5429 6.9714 47 1 2.9538 0.3362 7.9961 48 1 5.8295 0.2387 7.5852 49 1 4.8312 -1.2421 7.9268 50 1 8.4259 -1.0271 6.5786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038267877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:59 Heat of formation + Delta-G solvation = 49.804847 kcal Electronic energy + Delta-G solvation = -30878.598162 eV Core-core repulsion = 26906.941223 eV Total energy + Delta-G solvation = -3971.656939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.04424 -40.91408 -39.76617 -38.86534 -35.58212 -34.67557 -34.19773 -33.51517 -31.62586 -30.61143 -29.85949 -28.87363 -27.08287 -25.28486 -25.05169 -24.22533 -23.70033 -22.61036 -21.65683 -21.11408 -20.64573 -19.18969 -18.49712 -17.80793 -17.56256 -17.07250 -17.04166 -16.67120 -16.30606 -16.02680 -15.95459 -15.63997 -15.22317 -15.12907 -14.99054 -14.66352 -14.43411 -14.29144 -14.08339 -13.78663 -13.53505 -13.30247 -13.13080 -12.95739 -12.94071 -12.81784 -12.68753 -12.61190 -12.28251 -12.05206 -11.99422 -11.84014 -11.64127 -11.52526 -11.38420 -11.02076 -10.86444 -10.81210 -10.75404 -10.38984 -10.03901 -9.16978 -8.87230 -7.85670 -5.16950 0.12093 0.29648 1.41769 1.43929 1.51072 1.54536 2.12175 2.45954 2.51699 2.87784 3.21849 3.33450 3.38501 3.40634 3.60834 3.74132 3.97259 3.99658 4.05262 4.07949 4.14660 4.18476 4.19219 4.26354 4.32216 4.35984 4.49412 4.60736 4.64049 4.69614 4.71973 4.74914 4.83894 4.88382 4.93239 4.99428 5.06401 5.09526 5.11994 5.22453 5.26287 5.34434 5.35445 5.45870 5.51910 5.56487 5.62305 5.75866 5.99105 6.07910 6.54217 6.95272 6.96393 7.20612 7.67004 8.61671 9.31310 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008945 B = 0.004190 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.536736 B = 6681.606584 C = 9378.520816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 H 0.059 0.941 4 C 0.038 3.962 5 N -0.467 5.467 6 C 0.284 3.716 7 C -0.199 4.199 8 C -0.062 4.062 9 C -0.195 4.195 10 C 0.110 3.890 11 N -0.539 5.539 12 C 0.067 3.933 13 C -0.107 4.107 14 H 0.141 0.859 15 C 0.521 3.479 16 O -0.580 6.580 17 N -0.708 5.708 18 C 0.132 3.868 19 C 0.134 3.866 20 H 0.074 0.926 21 C -0.132 4.132 22 C 0.150 3.850 23 N -0.629 5.629 24 C -0.207 4.207 25 H 0.086 0.914 26 C -0.071 4.071 27 N -0.955 5.955 28 Si 0.958 3.042 29 H -0.298 1.298 30 H -0.298 1.298 31 H -0.258 1.258 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.136 0.864 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.183 0.817 41 H 0.108 0.892 42 H 0.033 0.967 43 H 0.409 0.591 44 H 0.037 0.963 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.037 0.963 49 H 0.023 0.977 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 -2.324 -15.496 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.106 4.106 3 H 0.077 0.923 4 C -0.088 4.088 5 N -0.184 5.184 6 C 0.053 3.947 7 C -0.221 4.221 8 C -0.088 4.088 9 C -0.216 4.216 10 C -0.047 4.047 11 N -0.254 5.254 12 C -0.059 4.059 13 C -0.129 4.129 14 H 0.158 0.842 15 C 0.307 3.693 16 O -0.460 6.460 17 N -0.358 5.358 18 C 0.007 3.993 19 C 0.028 3.972 20 H 0.092 0.908 21 C -0.171 4.171 22 C 0.025 3.975 23 N -0.355 5.355 24 C -0.336 4.336 25 H 0.104 0.896 26 C -0.263 4.263 27 N -0.605 5.605 28 Si 0.788 3.212 29 H -0.226 1.226 30 H -0.225 1.225 31 H -0.183 1.183 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.200 0.800 41 H 0.126 0.874 42 H 0.052 0.948 43 H 0.245 0.755 44 H 0.056 0.944 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.055 0.945 49 H 0.041 0.959 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.427 -1.747 -15.871 19.635 hybrid contribution 2.426 -0.277 0.067 2.443 sum -9.001 -2.024 -15.804 18.300 Atomic orbital electron populations 1.21650 0.91881 1.03019 1.02199 1.22135 0.98310 0.98216 0.91911 0.92251 1.23123 0.90912 0.96915 0.97855 1.60851 1.02638 1.52422 1.02526 1.20108 0.90750 0.90778 0.93085 1.21808 0.92861 1.03680 1.03748 1.21876 0.98936 0.95077 0.92913 1.22376 0.99958 0.99175 1.00074 1.23102 0.87853 0.97066 0.96635 1.67416 1.34637 1.14479 1.08851 1.23005 0.95670 1.00961 0.86280 1.22605 0.98114 0.99561 0.92606 0.84175 1.20628 0.76140 0.88037 0.84449 1.90655 1.51876 1.18636 1.84829 1.45965 1.64796 1.14300 1.10738 1.21536 0.99960 0.92985 0.84773 1.22665 0.85468 0.95985 0.93077 0.90847 1.23572 0.97652 0.98796 0.97083 1.22159 0.95452 0.94977 0.84936 1.46412 1.02455 1.82030 1.04630 1.19271 0.87857 1.37670 0.88814 0.89636 1.25474 0.98618 1.04018 0.98212 1.69997 1.13494 1.57839 1.19136 0.85355 0.79231 0.77360 0.79261 1.22573 1.22505 1.18258 0.90473 0.93307 0.91246 0.88248 0.88959 0.84574 0.82570 0.81714 0.80021 0.87365 0.94830 0.75506 0.94404 0.90154 0.90649 0.88770 0.94477 0.95900 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.14 71.98 0.66 -1.83 16 2 C -0.09 -2.08 2.66 -9.61 -0.03 -2.10 16 3 H 0.06 1.82 7.38 -2.39 -0.02 1.80 16 4 C 0.04 0.89 6.37 86.65 0.55 1.44 16 5 N -0.47 -11.96 5.20 -691.31 -3.60 -15.56 16 6 C 0.28 7.79 6.15 133.07 0.82 8.61 16 7 C -0.20 -5.09 9.38 22.50 0.21 -4.88 16 8 C -0.06 -1.31 10.17 22.44 0.23 -1.08 16 9 C -0.20 -3.56 10.10 22.37 0.23 -3.33 16 10 C 0.11 2.27 11.17 84.62 0.95 3.22 16 11 N -0.54 -14.24 7.95 -193.26 -1.54 -15.78 16 12 C 0.07 1.78 5.55 86.85 0.48 2.26 16 13 C -0.11 -2.62 2.88 -10.08 -0.03 -2.65 16 14 H 0.14 2.63 8.05 -2.39 -0.02 2.61 16 15 C 0.52 16.35 7.16 87.66 0.63 16.97 16 16 O -0.58 -22.44 15.71 -3.01 -0.05 -22.49 16 17 N -0.71 -21.79 5.53 -463.06 -2.56 -24.34 16 18 C 0.13 4.47 5.54 86.38 0.48 4.95 16 19 C 0.13 4.72 4.33 45.09 0.20 4.92 16 20 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 21 C -0.13 -4.48 7.86 31.25 0.25 -4.23 16 22 C 0.15 6.77 7.51 86.48 0.65 7.42 16 23 N -0.63 -29.58 3.57 -694.09 -2.48 -32.06 16 24 C -0.21 -10.80 10.51 84.03 0.88 -9.92 16 25 H 0.09 4.19 7.80 -2.91 -0.02 4.17 16 26 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 27 N -0.95 -56.81 11.38 21.65 0.25 -56.56 16 28 Si 0.96 44.67 29.55 68.60 2.03 46.70 16 29 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 30 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 31 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 32 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.94 7.80 -2.39 -0.02 1.92 16 36 H 0.09 2.37 5.91 -2.39 -0.01 2.36 16 37 H 0.14 3.38 7.98 -2.91 -0.02 3.35 16 38 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 42 H 0.03 1.08 7.67 -2.39 -0.02 1.06 16 43 H 0.41 11.54 8.47 -92.71 -0.79 10.75 16 44 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 46 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 47 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.04 1.93 7.15 -2.38 -0.02 1.91 16 49 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -72.15 404.25 -0.18 -72.34 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.15 Total: 31.43 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 7.61 Total: 16.32 kcal Atomic # 7 Polarization: -134.38 SS G_CDS: -9.93 Total: -144.30 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.15 -0.18 -72.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038267877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.140 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds