Wall clock time and date at job start Wed Apr 1 2020 04:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28447 * 125.19838 * 2 1 4 4 C 1.31072 * 110.96886 * 180.02562 * 3 2 1 5 5 C 1.39529 * 107.59519 * 359.97438 * 4 3 2 6 6 C 1.36665 * 125.19484 * 180.02562 * 2 1 3 7 7 C 1.47161 * 126.94427 * 359.97438 * 6 2 1 8 8 O 1.21631 * 120.00223 * 260.23794 * 7 6 2 9 9 N 1.34776 * 119.99728 * 80.23529 * 7 6 2 10 10 C 1.47147 * 121.22103 * 4.88015 * 9 7 6 11 11 C 1.51813 * 107.96417 * 123.12499 * 10 9 7 12 12 C 1.53099 * 111.31271 * 56.84059 * 11 10 9 13 13 H 1.08995 * 112.48986 * 71.29601 * 12 11 10 14 14 C 1.56034 * 107.06313 * 195.83385 * 12 11 10 15 15 C 1.54508 * 102.60609 * 78.60173 * 14 12 11 16 16 N 1.47434 * 107.14878 * 22.85691 * 15 14 12 17 17 C 1.36930 * 126.05837 * 181.63706 * 16 15 14 18 18 H 1.07998 * 120.00093 * 179.97438 * 17 16 15 19 19 C 1.38817 * 120.00106 * 359.96861 * 17 16 15 20 20 N 1.31617 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99794 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47540 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47105 * 120.00550 * 21 19 17 24 24 H 1.48506 * 109.47308 * 239.99921 * 21 19 17 25 25 C 1.46468 * 107.88074 * 1.61060 * 16 15 14 26 26 H 1.09007 * 107.85844 * 89.63614 * 25 16 15 27 27 C 1.46763 * 121.21478 * 185.16533 * 9 7 6 28 28 C 1.51145 * 109.95588 * 180.20007 * 5 4 3 29 29 C 1.54419 * 105.02477 * 16.79352 * 28 5 4 30 30 C 1.51265 * 143.02742 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47120 * 274.94934 * 1 2 3 32 32 H 1.08997 * 109.46841 * 34.94955 * 1 2 3 33 33 H 1.09003 * 109.47110 * 154.94349 * 1 2 3 34 34 H 1.09010 * 109.76063 * 242.35709 * 10 9 7 35 35 H 1.09002 * 109.75972 * 3.10851 * 10 9 7 36 36 H 1.08995 * 108.28726 * 296.72473 * 11 10 9 37 37 H 1.08996 * 109.44267 * 177.71210 * 11 10 9 38 38 H 1.08991 * 110.77987 * 196.88067 * 14 12 11 39 39 H 1.09000 * 110.77971 * 320.13451 * 14 12 11 40 40 H 1.09007 * 109.89715 * 142.23574 * 15 14 12 41 41 H 1.08995 * 109.90437 * 263.46881 * 15 14 12 42 42 H 0.96996 * 119.99904 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.22985 * 352.82520 * 27 9 7 44 44 H 1.08999 * 109.23067 * 112.23166 * 27 9 7 45 45 H 1.08996 * 110.25957 * 257.97359 * 28 5 4 46 46 H 1.09001 * 110.49198 * 135.72887 * 28 5 4 47 47 H 1.09002 * 110.78234 * 215.59774 * 29 28 5 48 48 H 1.09006 * 110.78615 * 92.34679 * 29 28 5 49 49 H 1.09000 * 110.28140 * 43.91297 * 30 4 3 50 50 H 1.09007 * 110.36405 * 281.85197 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0496 0.0000 4 6 3.4759 0.7274 -0.0005 5 6 3.5578 -0.6654 -0.0003 6 6 2.2527 -1.1168 -0.0005 7 6 1.8013 -2.5175 -0.0006 8 8 1.7852 -3.1514 1.0374 9 7 1.4058 -3.0979 -1.1509 10 6 1.5140 -2.3925 -2.4377 11 6 2.3537 -3.2464 -3.3706 12 6 1.7539 -4.6453 -3.5356 13 1 0.8366 -4.6389 -4.1242 14 6 2.8647 -5.5498 -4.1541 15 6 3.7555 -5.8722 -2.9336 16 7 2.9233 -5.6960 -1.7294 17 6 3.3375 -5.8517 -0.4335 18 1 2.6420 -5.6969 0.3780 19 6 4.6514 -6.2087 -0.1629 20 7 5.4992 -6.3969 -1.1519 21 14 5.2165 -6.4205 1.6049 22 1 4.0805 -6.1531 2.5232 23 1 5.6995 -7.8102 1.8071 24 1 6.3189 -5.4671 1.8898 25 6 1.5752 -5.3241 -2.1648 26 1 1.0047 -6.2420 -2.3068 27 6 0.8457 -4.4544 -1.1650 28 6 5.0063 -1.0970 0.0040 29 6 5.7963 0.1570 0.4373 30 6 4.8709 1.3122 -0.0013 31 1 -0.3633 0.0887 1.0238 32 1 -0.3633 0.8423 -0.5887 33 1 -0.3633 -0.9310 -0.4352 34 1 0.5215 -2.2544 -2.8669 35 1 1.9894 -1.4231 -2.2877 36 1 3.3547 -3.3321 -2.9478 37 1 2.4157 -2.7646 -4.3463 38 1 2.4345 -6.4606 -4.5703 39 1 3.4267 -5.0070 -4.9141 40 1 4.1083 -6.9019 -2.9934 41 1 4.6035 -5.1882 -2.9020 42 1 6.4174 -6.6460 -0.9628 43 1 0.9409 -4.8924 -0.1715 44 1 -0.2090 -4.4045 -1.4357 45 1 5.3102 -1.4089 -0.9952 46 1 5.1611 -1.9066 0.7172 47 1 6.7533 0.2098 -0.0818 48 1 5.9430 0.1678 1.5174 49 1 4.9350 2.1377 0.7076 50 1 5.1391 1.6523 -1.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042312781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:07 Heat of formation + Delta-G solvation = 90.345440 kcal Electronic energy + Delta-G solvation = -32942.542335 eV Core-core repulsion = 28972.643368 eV Total energy + Delta-G solvation = -3969.898967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55999 -39.85093 -37.96074 -36.80315 -35.05371 -32.83722 -32.18148 -31.35620 -30.67854 -29.06735 -28.43017 -27.31650 -26.40206 -24.73494 -24.24259 -22.55791 -22.28071 -21.06174 -20.14369 -19.98983 -19.08244 -18.17061 -17.26020 -16.62540 -16.24598 -15.78947 -15.53377 -14.97716 -14.86329 -14.61968 -14.23621 -13.98153 -13.83381 -13.73394 -13.08582 -12.93549 -12.88649 -12.70748 -12.66966 -12.65496 -12.39455 -11.96884 -11.70599 -11.66916 -11.42924 -11.26129 -11.02908 -10.91517 -10.88089 -10.78325 -10.69288 -10.22469 -10.07890 -9.89947 -9.86574 -9.67926 -9.57031 -9.48929 -8.79332 -8.51226 -8.37793 -8.24187 -6.74736 -5.61766 -2.93586 1.84176 2.29836 2.73640 2.94822 3.41429 3.48330 3.55257 3.62165 3.99290 4.56637 4.61197 4.79760 4.92293 4.96033 5.03916 5.09123 5.13705 5.21141 5.26094 5.29835 5.42908 5.45575 5.53198 5.66536 5.70216 5.71519 5.78084 5.86957 5.91394 5.94462 5.99088 6.08038 6.10340 6.11826 6.22081 6.28663 6.34092 6.37975 6.40769 6.45562 6.60405 6.68001 6.70744 6.89615 6.93154 7.03723 7.63588 7.66053 7.72115 7.93714 8.19541 8.32080 8.47815 9.31740 9.92392 10.56139 11.50599 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.005472 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.039667 B = 5115.630796 C = 6278.513403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.281 5.281 3 N -0.274 5.274 4 C 0.003 3.997 5 C -0.172 4.172 6 C 0.002 3.998 7 C 0.597 3.403 8 O -0.513 6.513 9 N -0.583 5.583 10 C 0.114 3.886 11 C -0.122 4.122 12 C -0.100 4.100 13 H 0.074 0.926 14 C -0.143 4.143 15 C 0.179 3.821 16 N -0.588 5.588 17 C -0.211 4.211 18 H 0.082 0.918 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.153 3.847 26 H 0.028 0.972 27 C 0.113 3.887 28 C -0.046 4.046 29 C -0.115 4.115 30 C -0.022 4.022 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.248 0.752 43 H 0.097 0.903 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.800 13.656 -4.949 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.069 5.069 3 N -0.104 5.104 4 C -0.156 4.156 5 C -0.183 4.183 6 C -0.125 4.125 7 C 0.380 3.620 8 O -0.386 6.386 9 N -0.316 5.316 10 C -0.009 4.009 11 C -0.160 4.160 12 C -0.120 4.120 13 H 0.093 0.907 14 C -0.181 4.181 15 C 0.054 3.946 16 N -0.313 5.313 17 C -0.339 4.339 18 H 0.100 0.900 19 C -0.202 4.202 20 N -0.573 5.573 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.219 1.219 25 C 0.045 3.955 26 H 0.046 0.954 27 C -0.010 4.010 28 C -0.084 4.084 29 C -0.153 4.153 30 C -0.061 4.061 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.535 14.129 -4.227 17.040 hybrid contribution 0.785 -0.853 0.811 1.414 sum -7.750 13.276 -3.417 15.748 Atomic orbital electron populations 1.22074 0.73170 1.04922 1.04434 1.45607 1.06971 1.01206 1.53149 1.72586 1.02889 1.12824 1.22127 1.22718 0.92566 0.94448 1.05902 1.21182 0.93978 0.95111 1.08006 1.20564 0.91010 0.88869 1.12100 1.16877 0.77258 0.83914 0.83907 1.90842 1.52223 1.63642 1.31866 1.47780 1.61800 1.16103 1.05964 1.21436 0.99823 0.95628 0.83982 1.21594 1.01244 0.94964 0.98158 1.22343 0.97743 0.94573 0.97310 0.90737 1.23149 0.97618 0.98131 0.99231 1.21211 0.91444 0.99979 0.81937 1.44305 1.04567 1.80021 1.02447 1.19078 0.94397 1.38635 0.81799 0.90037 1.24669 0.96225 1.02262 0.97042 1.69963 1.04187 1.54476 1.28716 0.86166 0.78623 0.77015 0.84971 1.20253 1.22082 1.21881 1.20717 0.89434 0.94191 0.91185 0.95428 1.21495 0.94850 0.81280 1.03394 1.20428 0.87244 0.97961 1.02767 1.22383 0.97957 0.93299 1.01704 1.20377 0.85548 0.97917 1.02260 0.89876 0.88542 0.89021 0.92001 0.90717 0.90085 0.91965 0.92692 0.92311 0.94075 0.93683 0.94125 0.88462 0.92416 0.90002 0.90292 0.89933 0.90839 0.90608 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 11.22 59.85 0.67 1.64 16 2 N -0.28 -4.21 3.75 -63.95 -0.24 -4.45 16 3 N -0.27 -4.31 11.91 33.78 0.40 -3.91 16 4 C 0.00 0.05 8.13 -82.16 -0.67 -0.62 16 5 C -0.17 -3.02 7.02 -103.97 -0.73 -3.75 16 6 C 0.00 0.03 4.72 -82.14 -0.39 -0.36 16 7 C 0.60 11.74 6.90 -12.64 -0.09 11.65 16 8 O -0.51 -12.16 16.57 5.25 0.09 -12.08 16 9 N -0.58 -10.13 2.97 -176.07 -0.52 -10.65 16 10 C 0.11 1.63 6.32 -4.29 -0.03 1.60 16 11 C -0.12 -1.87 5.00 -27.28 -0.14 -2.01 16 12 C -0.10 -1.60 3.65 -88.42 -0.32 -1.92 16 13 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 14 C -0.14 -2.52 6.34 -24.32 -0.15 -2.68 16 15 C 0.18 4.18 4.63 -2.74 -0.01 4.17 16 16 N -0.59 -14.26 3.21 -164.41 -0.53 -14.79 16 17 C -0.21 -5.84 9.70 -15.06 -0.15 -5.98 16 18 H 0.08 2.33 6.51 -52.49 -0.34 1.99 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -27.16 10.38 55.49 0.58 -26.58 16 21 Si 0.90 23.41 29.55 -169.99 -5.02 18.39 16 22 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 24 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 25 C 0.15 2.95 2.97 -68.30 -0.20 2.75 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 C 0.11 2.02 5.69 -4.77 -0.03 1.99 16 28 C -0.05 -0.75 6.78 -26.92 -0.18 -0.93 16 29 C -0.12 -1.39 7.06 -25.27 -0.18 -1.57 16 30 C -0.02 -0.26 6.76 -26.88 -0.18 -0.44 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.87 7.66 -51.93 -0.40 0.48 16 34 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.07 1.09 6.42 -51.93 -0.33 0.76 16 36 H 0.08 1.58 6.96 -51.93 -0.36 1.22 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.94 7.99 -51.93 -0.42 0.53 16 40 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 41 H 0.04 1.18 7.09 -51.93 -0.37 0.81 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.10 2.06 5.52 -51.93 -0.29 1.77 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -34.45 386.06 -10.25 -44.70 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.95 Total: 0.29 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -2.87 Total: 3.27 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.31 Total: -60.38 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.45 -10.25 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042312781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.041 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds