Wall clock time and date at job start Wed Apr 1 2020 04:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28447 * 125.19838 * 2 1 4 4 C 1.31072 * 110.96886 * 180.02562 * 3 2 1 5 5 C 1.39529 * 107.59519 * 359.97438 * 4 3 2 6 6 C 1.36665 * 125.19484 * 180.02562 * 2 1 3 7 7 C 1.47161 * 126.94427 * 359.97438 * 6 2 1 8 8 O 1.21631 * 120.00223 * 260.23794 * 7 6 2 9 9 N 1.34776 * 119.99728 * 80.23529 * 7 6 2 10 10 C 1.47147 * 121.22103 * 4.88015 * 9 7 6 11 11 C 1.51813 * 107.96417 * 123.12499 * 10 9 7 12 12 C 1.53099 * 111.31271 * 56.84059 * 11 10 9 13 13 H 1.08995 * 112.48986 * 71.29601 * 12 11 10 14 14 C 1.56034 * 107.06313 * 195.83385 * 12 11 10 15 15 C 1.54508 * 102.60609 * 78.60173 * 14 12 11 16 16 N 1.47434 * 107.14878 * 22.85691 * 15 14 12 17 17 C 1.36930 * 126.05837 * 181.63706 * 16 15 14 18 18 H 1.07998 * 120.00093 * 179.97438 * 17 16 15 19 19 C 1.38817 * 120.00106 * 359.96861 * 17 16 15 20 20 N 1.31617 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99794 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47540 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47105 * 120.00550 * 21 19 17 24 24 H 1.48506 * 109.47308 * 239.99921 * 21 19 17 25 25 C 1.46468 * 107.88074 * 1.61060 * 16 15 14 26 26 H 1.09007 * 107.85844 * 89.63614 * 25 16 15 27 27 C 1.46763 * 121.21478 * 185.16533 * 9 7 6 28 28 C 1.51145 * 109.95588 * 180.20007 * 5 4 3 29 29 C 1.54419 * 105.02477 * 16.79352 * 28 5 4 30 30 C 1.51265 * 143.02742 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47120 * 274.94934 * 1 2 3 32 32 H 1.08997 * 109.46841 * 34.94955 * 1 2 3 33 33 H 1.09003 * 109.47110 * 154.94349 * 1 2 3 34 34 H 1.09010 * 109.76063 * 242.35709 * 10 9 7 35 35 H 1.09002 * 109.75972 * 3.10851 * 10 9 7 36 36 H 1.08995 * 108.28726 * 296.72473 * 11 10 9 37 37 H 1.08996 * 109.44267 * 177.71210 * 11 10 9 38 38 H 1.08991 * 110.77987 * 196.88067 * 14 12 11 39 39 H 1.09000 * 110.77971 * 320.13451 * 14 12 11 40 40 H 1.09007 * 109.89715 * 142.23574 * 15 14 12 41 41 H 1.08995 * 109.90437 * 263.46881 * 15 14 12 42 42 H 0.96996 * 119.99904 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.22985 * 352.82520 * 27 9 7 44 44 H 1.08999 * 109.23067 * 112.23166 * 27 9 7 45 45 H 1.08996 * 110.25957 * 257.97359 * 28 5 4 46 46 H 1.09001 * 110.49198 * 135.72887 * 28 5 4 47 47 H 1.09002 * 110.78234 * 215.59774 * 29 28 5 48 48 H 1.09006 * 110.78615 * 92.34679 * 29 28 5 49 49 H 1.09000 * 110.28140 * 43.91297 * 30 4 3 50 50 H 1.09007 * 110.36405 * 281.85197 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0496 0.0000 4 6 3.4759 0.7274 -0.0005 5 6 3.5578 -0.6654 -0.0003 6 6 2.2527 -1.1168 -0.0005 7 6 1.8013 -2.5175 -0.0006 8 8 1.7852 -3.1514 1.0374 9 7 1.4058 -3.0979 -1.1509 10 6 1.5140 -2.3925 -2.4377 11 6 2.3537 -3.2464 -3.3706 12 6 1.7539 -4.6453 -3.5356 13 1 0.8366 -4.6389 -4.1242 14 6 2.8647 -5.5498 -4.1541 15 6 3.7555 -5.8722 -2.9336 16 7 2.9233 -5.6960 -1.7294 17 6 3.3375 -5.8517 -0.4335 18 1 2.6420 -5.6969 0.3780 19 6 4.6514 -6.2087 -0.1629 20 7 5.4992 -6.3969 -1.1519 21 14 5.2165 -6.4205 1.6049 22 1 4.0805 -6.1531 2.5232 23 1 5.6995 -7.8102 1.8071 24 1 6.3189 -5.4671 1.8898 25 6 1.5752 -5.3241 -2.1648 26 1 1.0047 -6.2420 -2.3068 27 6 0.8457 -4.4544 -1.1650 28 6 5.0063 -1.0970 0.0040 29 6 5.7963 0.1570 0.4373 30 6 4.8709 1.3122 -0.0013 31 1 -0.3633 0.0887 1.0238 32 1 -0.3633 0.8423 -0.5887 33 1 -0.3633 -0.9310 -0.4352 34 1 0.5215 -2.2544 -2.8669 35 1 1.9894 -1.4231 -2.2877 36 1 3.3547 -3.3321 -2.9478 37 1 2.4157 -2.7646 -4.3463 38 1 2.4345 -6.4606 -4.5703 39 1 3.4267 -5.0070 -4.9141 40 1 4.1083 -6.9019 -2.9934 41 1 4.6035 -5.1882 -2.9020 42 1 6.4174 -6.6460 -0.9628 43 1 0.9409 -4.8924 -0.1715 44 1 -0.2090 -4.4045 -1.4357 45 1 5.3102 -1.4089 -0.9952 46 1 5.1611 -1.9066 0.7172 47 1 6.7533 0.2098 -0.0818 48 1 5.9430 0.1678 1.5174 49 1 4.9350 2.1377 0.7076 50 1 5.1391 1.6523 -1.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042312781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:06 Heat of formation + Delta-G solvation = 68.084099 kcal Electronic energy + Delta-G solvation = -32943.507659 eV Core-core repulsion = 28972.643368 eV Total energy + Delta-G solvation = -3970.864291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.75682 -41.32218 -39.55333 -37.90361 -36.66018 -34.68252 -33.27462 -32.92370 -32.04112 -30.56656 -30.14927 -28.48728 -27.41181 -26.53513 -25.86481 -23.96087 -23.55438 -22.26841 -21.74489 -21.33389 -20.50338 -19.55775 -18.57026 -18.45864 -17.56943 -17.08433 -16.91772 -16.69700 -16.17303 -15.95934 -15.87980 -15.57209 -15.34767 -14.94228 -14.61899 -14.33939 -14.17406 -13.88157 -13.82650 -13.69988 -13.67576 -13.47926 -13.23505 -13.14485 -13.01494 -12.75796 -12.69238 -12.59607 -12.37345 -12.11884 -12.05265 -11.87682 -11.69267 -11.49032 -11.44343 -11.33257 -11.22544 -11.05968 -10.67266 -10.01393 -9.66625 -9.58644 -8.79367 -7.83520 -5.12507 0.56133 1.09287 1.32679 1.35539 1.46514 1.52483 1.55373 2.11826 2.47018 2.86820 3.27232 3.35571 3.57972 3.80966 3.85310 3.87895 3.93201 4.07905 4.13087 4.19719 4.22858 4.24379 4.28622 4.41263 4.42797 4.48064 4.53795 4.62358 4.67165 4.73229 4.78221 4.80239 4.82665 4.84255 4.97422 4.98210 5.05060 5.09442 5.13931 5.16219 5.28107 5.31094 5.43831 5.54430 5.56722 5.63308 5.73045 5.82344 5.83365 6.24161 6.30639 6.98575 7.01766 7.16509 7.84192 8.46653 9.27346 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.005472 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.039667 B = 5115.630796 C = 6278.513403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.271 5.271 3 N -0.275 5.275 4 C 0.002 3.998 5 C -0.207 4.207 6 C -0.016 4.016 7 C 0.593 3.407 8 O -0.570 6.570 9 N -0.578 5.578 10 C 0.115 3.885 11 C -0.117 4.117 12 C -0.081 4.081 13 H 0.128 0.872 14 C -0.129 4.129 15 C 0.186 3.814 16 N -0.605 5.605 17 C -0.197 4.197 18 H 0.066 0.934 19 C -0.061 4.061 20 N -0.947 5.947 21 Si 0.946 3.054 22 H -0.285 1.285 23 H -0.287 1.287 24 H -0.295 1.295 25 C 0.140 3.860 26 H 0.035 0.965 27 C 0.114 3.886 28 C -0.050 4.050 29 C -0.105 4.105 30 C -0.016 4.016 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.080 0.920 40 H -0.001 1.001 41 H 0.005 0.995 42 H 0.242 0.758 43 H 0.055 0.945 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.098 0.902 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.232 16.348 -7.416 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.060 5.060 3 N -0.106 5.106 4 C -0.157 4.157 5 C -0.218 4.218 6 C -0.144 4.144 7 C 0.378 3.622 8 O -0.448 6.448 9 N -0.310 5.310 10 C -0.006 4.006 11 C -0.155 4.155 12 C -0.100 4.100 13 H 0.146 0.854 14 C -0.167 4.167 15 C 0.061 3.939 16 N -0.330 5.330 17 C -0.327 4.327 18 H 0.084 0.916 19 C -0.253 4.253 20 N -0.598 5.598 21 Si 0.777 3.223 22 H -0.211 1.211 23 H -0.214 1.214 24 H -0.222 1.222 25 C 0.033 3.967 26 H 0.052 0.948 27 C -0.009 4.009 28 C -0.089 4.089 29 C -0.142 4.142 30 C -0.055 4.055 31 H 0.110 0.890 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.017 0.983 41 H 0.023 0.977 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.126 0.874 48 H 0.094 0.906 49 H 0.117 0.883 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.020 16.843 -6.745 21.228 hybrid contribution 1.439 -1.726 1.565 2.738 sum -9.582 15.117 -5.181 18.633 Atomic orbital electron populations 1.22497 0.70582 1.06758 1.05799 1.45999 1.08308 0.99985 1.51679 1.72578 1.03052 1.12811 1.22181 1.23327 0.93739 0.93610 1.04999 1.21530 0.94236 0.96756 1.09266 1.20415 0.91808 0.88675 1.13503 1.17218 0.76502 0.84639 0.83804 1.90804 1.54879 1.65150 1.33988 1.47918 1.60465 1.15907 1.06664 1.21686 1.02237 0.94720 0.81974 1.21566 0.98568 0.95400 0.99994 1.22398 0.99060 0.93679 0.94875 0.85436 1.23008 0.97249 0.99713 0.96723 1.20958 0.91877 0.96481 0.84564 1.44480 1.07055 1.79977 1.01505 1.19081 0.93878 1.36363 0.83414 0.91640 1.25214 0.96842 1.03837 0.99444 1.70132 1.03905 1.56201 1.29522 0.85461 0.77706 0.76954 0.82182 1.21054 1.21416 1.22214 1.21076 0.86809 0.95179 0.93618 0.94762 1.21473 0.97377 0.81180 1.00829 1.20470 0.88290 0.98954 1.01158 1.22396 0.98626 0.91064 1.02163 1.20524 0.82924 0.97850 1.04217 0.89043 0.85438 0.88197 0.87064 0.91042 0.95229 0.88092 0.91019 0.90184 0.98265 0.97695 0.94861 0.92614 0.87341 0.91004 0.94374 0.87358 0.90621 0.88342 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.47 11.22 127.77 1.43 2.90 16 2 N -0.27 -7.73 3.75 -356.23 -1.34 -9.07 16 3 N -0.28 -8.15 11.91 -47.03 -0.56 -8.71 16 4 C 0.00 0.06 8.13 43.16 0.35 0.41 16 5 C -0.21 -7.42 7.02 -19.45 -0.14 -7.56 16 6 C -0.02 -0.57 4.72 40.70 0.19 -0.38 16 7 C 0.59 23.96 6.90 86.59 0.60 24.56 16 8 O -0.57 -28.73 16.57 -4.13 -0.07 -28.80 16 9 N -0.58 -19.51 2.97 -829.20 -2.46 -21.97 16 10 C 0.12 2.90 6.32 85.87 0.54 3.44 16 11 C -0.12 -3.24 5.00 30.24 0.15 -3.09 16 12 C -0.08 -2.25 3.65 -9.37 -0.03 -2.29 16 13 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 14 C -0.13 -4.24 6.34 32.16 0.20 -4.04 16 15 C 0.19 9.01 4.63 86.71 0.40 9.41 16 16 N -0.61 -30.30 3.21 -674.08 -2.16 -32.46 16 17 C -0.20 -11.54 9.70 84.04 0.81 -10.72 16 18 H 0.07 4.00 6.51 -2.91 -0.02 3.98 16 19 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 20 N -0.95 -59.01 10.38 21.65 0.22 -58.78 16 21 Si 0.95 50.97 29.55 68.60 2.03 53.00 16 22 H -0.28 -15.52 7.11 99.48 0.71 -14.82 16 23 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 24 H -0.29 -15.85 7.11 99.48 0.71 -15.15 16 25 C 0.14 5.19 2.97 44.77 0.13 5.33 16 26 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 27 C 0.11 3.95 5.69 85.76 0.49 4.44 16 28 C -0.05 -1.74 6.78 30.47 0.21 -1.53 16 29 C -0.10 -2.45 7.06 31.54 0.22 -2.23 16 30 C -0.02 -0.35 6.76 30.49 0.21 -0.14 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.62 7.66 -2.39 -0.02 1.60 16 34 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.07 1.91 6.42 -2.39 -0.02 1.89 16 36 H 0.03 1.13 6.96 -2.39 -0.02 1.12 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.08 2.33 7.99 -2.39 -0.02 2.31 16 40 H 0.00 -0.05 7.57 -2.38 -0.02 -0.07 16 41 H 0.00 0.27 7.09 -2.39 -0.02 0.25 16 42 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.06 2.43 5.52 -2.39 -0.01 2.41 16 44 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 49 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -84.70 386.06 2.85 -81.86 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.94 Total: 9.65 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.24 Total: 15.28 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -6.29 Total: -130.99 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.07 Total: -28.80 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.03 Total: 53.00 kcal Total: -84.70 2.85 -81.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042312781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.941 kcal (2) G-P(sol) polarization free energy of solvation -84.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds