Wall clock time and date at job start Wed Apr 1 2020 04:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28441 * 125.19776 * 2 1 4 4 C 1.31071 * 110.96914 * 180.30372 * 3 2 1 5 5 C 1.39532 * 107.59459 * 359.72429 * 4 3 2 6 6 C 1.36671 * 125.19610 * 179.84994 * 2 1 3 7 7 C 1.47157 * 126.94098 * 359.97438 * 6 2 1 8 8 O 1.21638 * 119.99895 * 99.51395 * 7 6 2 9 9 N 1.34773 * 120.00215 * 279.51205 * 7 6 2 10 10 C 1.47155 * 121.21550 * 354.86557 * 9 7 6 11 11 C 1.52840 * 107.97800 * 237.28620 * 10 9 7 12 12 C 1.53092 * 110.57270 * 302.65185 * 11 10 9 13 13 H 1.08999 * 112.49495 * 289.44601 * 12 11 10 14 14 C 1.56032 * 107.06663 * 164.90914 * 12 11 10 15 15 C 1.54520 * 102.70534 * 281.16978 * 14 12 11 16 16 N 1.47438 * 107.13584 * 337.53252 * 15 14 12 17 17 C 1.36942 * 126.05694 * 178.23147 * 16 15 14 18 18 H 1.08006 * 119.99386 * 179.69672 * 17 16 15 19 19 C 1.38805 * 120.00046 * 359.69052 * 17 16 15 20 20 N 1.31617 * 120.00167 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99795 * 180.27460 * 19 17 16 22 22 H 1.48502 * 109.46731 * 179.72792 * 21 19 17 23 23 H 1.48496 * 109.47265 * 299.72813 * 21 19 17 24 24 H 1.48495 * 109.46825 * 59.73104 * 21 19 17 25 25 C 1.46466 * 107.88173 * 357.97236 * 16 15 14 26 26 H 1.08999 * 108.42159 * 270.36980 * 25 16 15 27 27 C 1.44087 * 121.22025 * 175.47317 * 9 7 6 28 28 C 1.50858 * 109.87847 * 180.02562 * 5 4 3 29 29 C 1.54424 * 105.16596 * 17.06014 * 28 5 4 30 30 C 1.51271 * 143.02486 * 179.71777 * 4 3 2 31 31 H 1.09002 * 109.46863 * 275.12296 * 1 2 3 32 32 H 1.08997 * 109.47505 * 35.12609 * 1 2 3 33 33 H 1.09003 * 109.47002 * 155.12418 * 1 2 3 34 34 H 1.08997 * 109.75633 * 117.66470 * 10 9 7 35 35 H 1.08997 * 109.80117 * 356.92774 * 10 9 7 36 36 H 1.09000 * 109.24981 * 182.37238 * 11 10 9 37 37 H 1.09000 * 109.25741 * 62.93405 * 11 10 9 38 38 H 1.09000 * 110.77874 * 39.67359 * 14 12 11 39 39 H 1.09001 * 110.78289 * 162.92270 * 14 12 11 40 40 H 1.09007 * 110.02660 * 218.09679 * 15 14 12 41 41 H 1.08994 * 109.79323 * 96.84711 * 15 14 12 42 42 H 0.97000 * 119.99831 * 179.97438 * 20 19 17 43 43 H 1.09001 * 108.85448 * 6.57751 * 27 9 7 44 44 H 1.08998 * 108.07117 * 248.10772 * 27 9 7 45 45 H 1.08997 * 110.29969 * 135.98497 * 28 5 4 46 46 H 1.08999 * 110.30203 * 258.03947 * 28 5 4 47 47 H 1.09002 * 110.78352 * 92.02264 * 29 28 5 48 48 H 1.09007 * 110.78178 * 215.45641 * 29 28 5 49 49 H 1.08998 * 110.28716 * 43.92762 * 30 4 3 50 50 H 1.09004 * 110.36347 * 281.86019 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0496 0.0000 4 6 3.4758 0.7274 -0.0065 5 6 3.5578 -0.6655 -0.0047 6 6 2.2528 -1.1168 0.0029 7 6 1.8014 -2.5175 0.0071 8 8 1.7802 -3.1527 -1.0300 9 7 1.4115 -3.0964 1.1600 10 6 1.5312 -2.3913 2.4461 11 6 2.3883 -3.2492 3.3764 12 6 1.7721 -4.6405 3.5449 13 1 0.8544 -4.6218 4.1327 14 6 2.8718 -5.5560 4.1671 15 6 3.7581 -5.8987 2.9486 16 7 2.9308 -5.7100 1.7429 17 6 3.3442 -5.8747 0.4478 18 1 2.6510 -5.7143 -0.3648 19 6 4.6541 -6.2475 0.1795 20 7 5.4986 -6.4432 1.1698 21 14 5.2200 -6.4646 -1.5875 22 1 6.6525 -6.8560 -1.6038 23 1 4.4099 -7.5243 -2.2401 24 1 5.0478 -5.1862 -2.3230 25 6 1.5867 -5.3212 2.1760 26 1 0.9956 -6.2258 2.3184 27 6 0.8742 -4.4332 1.1801 28 6 5.0041 -1.0942 -0.0114 29 6 5.7986 0.1577 0.4199 30 6 4.8709 1.3123 -0.0152 31 1 -0.3633 0.0918 1.0236 32 1 -0.3634 0.8405 -0.5913 33 1 -0.3633 -0.9324 -0.4323 34 1 0.5423 -2.2498 2.8821 35 1 2.0086 -1.4234 2.2935 36 1 2.4556 -2.7654 4.3509 37 1 3.3885 -3.3477 2.9547 38 1 3.4416 -5.0165 4.9236 39 1 2.4303 -6.4591 4.5886 40 1 4.0933 -6.9341 3.0102 41 1 4.6176 -5.2291 2.9174 42 1 6.4139 -6.7041 0.9822 43 1 0.9668 -4.8651 0.1836 44 1 -0.1808 -4.3696 1.4464 45 1 5.1613 -1.9055 0.6995 46 1 5.3014 -1.4064 -1.0125 47 1 5.9484 0.1679 1.4995 48 1 6.7529 0.2098 -0.1044 49 1 4.9386 2.1387 0.6923 50 1 5.1339 1.6510 -1.0174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042312783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:15 Heat of formation + Delta-G solvation = 89.750011 kcal Electronic energy + Delta-G solvation = -32952.346977 eV Core-core repulsion = 28982.422190 eV Total energy + Delta-G solvation = -3969.924787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.57191 -39.95458 -37.97598 -36.82138 -35.11177 -32.85947 -32.19346 -31.36330 -30.67764 -29.06081 -28.43050 -27.32384 -26.41048 -24.73494 -24.27794 -22.60640 -22.26377 -21.05800 -20.14859 -19.98737 -19.13100 -18.17645 -17.19000 -16.69784 -16.39489 -15.62612 -15.59150 -15.00739 -14.87758 -14.62065 -14.25047 -13.97336 -13.86020 -13.75546 -13.07261 -12.95085 -12.87155 -12.73992 -12.68314 -12.59454 -12.40937 -11.96649 -11.70658 -11.66644 -11.43928 -11.26599 -11.02852 -10.93508 -10.88874 -10.79519 -10.65548 -10.22796 -10.11559 -9.91727 -9.86269 -9.68909 -9.58201 -9.48842 -8.79840 -8.50434 -8.38203 -8.22696 -6.74998 -5.61633 -2.93714 1.83336 2.29098 2.73181 2.92759 3.45707 3.50948 3.53441 3.60194 3.98542 4.56255 4.61196 4.80138 4.91894 4.94664 5.05222 5.09228 5.13344 5.20900 5.26097 5.30197 5.42629 5.46157 5.53411 5.66244 5.69687 5.71495 5.77117 5.86562 5.92229 5.94105 5.99380 6.07804 6.10680 6.11831 6.22640 6.29236 6.33813 6.36911 6.41747 6.47443 6.61255 6.68077 6.71060 6.90717 6.93231 7.07530 7.63438 7.65788 7.70932 7.92918 8.19025 8.32401 8.47120 9.31678 9.92438 10.56342 11.50521 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009947 B = 0.005393 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.326696 B = 5190.743708 C = 6222.938457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.281 5.281 3 N -0.274 5.274 4 C 0.003 3.997 5 C -0.172 4.172 6 C 0.002 3.998 7 C 0.596 3.404 8 O -0.512 6.512 9 N -0.577 5.577 10 C 0.112 3.888 11 C -0.120 4.120 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.143 4.143 15 C 0.179 3.821 16 N -0.588 5.588 17 C -0.213 4.213 18 H 0.080 0.920 19 C -0.005 4.005 20 N -0.925 5.925 21 Si 0.903 3.097 22 H -0.292 1.292 23 H -0.287 1.287 24 H -0.283 1.283 25 C 0.155 3.845 26 H 0.029 0.971 27 C 0.110 3.890 28 C -0.048 4.048 29 C -0.114 4.114 30 C -0.023 4.023 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.250 0.750 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 13.847 4.972 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.069 5.069 3 N -0.104 5.104 4 C -0.156 4.156 5 C -0.182 4.182 6 C -0.125 4.125 7 C 0.380 3.620 8 O -0.386 6.386 9 N -0.309 5.309 10 C -0.011 4.011 11 C -0.158 4.158 12 C -0.121 4.121 13 H 0.093 0.907 14 C -0.182 4.182 15 C 0.054 3.946 16 N -0.313 5.313 17 C -0.342 4.342 18 H 0.098 0.902 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.214 1.214 24 H -0.209 1.209 25 C 0.046 3.954 26 H 0.046 0.954 27 C -0.014 4.014 28 C -0.086 4.086 29 C -0.152 4.152 30 C -0.062 4.062 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.315 14.322 4.259 17.100 hybrid contribution 0.742 -0.888 -0.840 1.430 sum -7.573 13.434 3.418 15.796 Atomic orbital electron populations 1.22071 0.73141 1.05131 1.04221 1.45611 1.06979 1.01187 1.53146 1.72583 1.02899 1.12832 1.22085 1.22726 0.92573 0.94443 1.05898 1.21113 0.93986 0.95139 1.07988 1.20527 0.91012 0.88828 1.12170 1.16896 0.77194 0.84020 0.83925 1.90844 1.52094 1.63625 1.32004 1.47106 1.62032 1.15762 1.06034 1.21644 0.99768 0.95679 0.83978 1.21781 1.00950 0.94909 0.98191 1.22370 0.97733 0.94657 0.97386 0.90737 1.23155 0.97686 0.98092 0.99224 1.21218 0.91574 0.99846 0.81928 1.44274 1.05121 1.79503 1.02422 1.18974 0.94676 1.38700 0.81812 0.90193 1.24665 0.96239 1.02144 0.97048 1.69945 1.04625 1.53957 1.28824 0.86318 0.77263 0.78199 0.84887 1.21840 1.21360 1.20915 1.20699 0.89472 0.94047 0.91169 0.95363 1.21003 0.94934 0.81951 1.03552 1.20393 0.87305 0.98129 1.02775 1.22375 0.97870 0.93207 1.01727 1.20387 0.85554 0.97957 1.02277 0.89837 0.88608 0.88992 0.91806 0.90755 0.91988 0.89979 0.92321 0.92721 0.94122 0.93629 0.94007 0.88531 0.92865 0.90023 0.90226 0.90679 0.89987 0.90558 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.22 59.85 0.67 1.64 16 2 N -0.28 -4.20 3.75 -63.95 -0.24 -4.44 16 3 N -0.27 -4.29 11.91 33.78 0.40 -3.89 16 4 C 0.00 0.05 8.13 -82.15 -0.67 -0.62 16 5 C -0.17 -3.01 7.02 -104.12 -0.73 -3.74 16 6 C 0.00 0.03 4.72 -82.14 -0.39 -0.36 16 7 C 0.60 11.70 6.89 -12.64 -0.09 11.62 16 8 O -0.51 -12.13 16.51 5.24 0.09 -12.04 16 9 N -0.58 -10.05 2.93 -177.57 -0.52 -10.57 16 10 C 0.11 1.61 6.33 -3.77 -0.02 1.59 16 11 C -0.12 -1.86 5.08 -26.77 -0.14 -1.99 16 12 C -0.10 -1.63 3.63 -88.43 -0.32 -1.95 16 13 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.14 -2.53 6.34 -24.31 -0.15 -2.69 16 15 C 0.18 4.19 4.64 -2.73 -0.01 4.18 16 16 N -0.59 -14.30 3.20 -164.41 -0.53 -14.82 16 17 C -0.21 -5.92 9.70 -15.06 -0.15 -6.06 16 18 H 0.08 2.28 6.53 -52.48 -0.34 1.94 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 20 N -0.93 -27.13 10.38 55.49 0.58 -26.55 16 21 Si 0.90 23.39 29.55 -169.99 -5.02 18.36 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 25 C 0.15 3.00 3.02 -68.30 -0.21 2.80 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 C 0.11 1.98 5.53 -6.20 -0.03 1.95 16 28 C -0.05 -0.78 6.76 -27.06 -0.18 -0.96 16 29 C -0.11 -1.34 7.07 -25.26 -0.18 -1.52 16 30 C -0.02 -0.26 6.76 -26.88 -0.18 -0.45 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.93 7.66 -51.93 -0.40 0.54 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.09 6.43 -51.93 -0.33 0.75 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.60 6.98 -51.93 -0.36 1.23 16 38 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 1.07 7.59 -51.93 -0.39 0.68 16 41 H 0.05 1.19 7.10 -51.93 -0.37 0.82 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.10 2.06 5.43 -51.93 -0.28 1.78 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -34.34 385.87 -10.25 -44.60 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.95 Total: 0.37 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.87 Total: 3.17 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.31 Total: -60.27 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.34 -10.25 -44.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042312783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.346 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds