Wall clock time and date at job start Wed Apr 1 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.57339 * 2 1 4 4 C 1.53260 * 109.68994 * 239.67198 * 2 1 3 5 5 C 1.53158 * 109.44458 * 189.91223 * 4 2 1 6 6 C 1.53374 * 109.22493 * 69.32964 * 5 4 2 7 7 C 1.51121 * 108.24665 * 311.14537 * 6 5 4 8 8 N 1.30554 * 127.09548 * 196.41488 * 7 6 5 9 9 C 1.33455 * 109.68737 * 180.02562 * 8 7 6 10 10 C 1.36828 * 107.83190 * 359.57726 * 9 8 7 11 11 C 1.46769 * 126.91395 * 180.29837 * 10 9 8 12 12 O 1.21680 * 120.00155 * 153.16144 * 11 10 9 13 13 N 1.34780 * 119.99704 * 333.16239 * 11 10 9 14 14 C 1.46658 * 125.33275 * 186.00916 * 13 11 10 15 15 C 1.53677 * 107.96998 * 180.70989 * 14 13 11 16 16 H 1.08997 * 112.77773 * 139.88429 * 15 14 13 17 17 C 1.53981 * 109.29628 * 266.20805 * 15 14 13 18 18 N 1.46752 * 106.67817 * 138.83557 * 17 15 14 19 19 C 1.36941 * 125.33580 * 161.58556 * 18 17 15 20 20 H 1.08001 * 119.99877 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00230 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99391 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00345 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46962 * 89.99903 * 23 21 19 25 25 H 1.48493 * 109.47533 * 210.00162 * 23 21 19 26 26 H 1.48499 * 109.46872 * 330.00331 * 23 21 19 27 27 C 1.46651 * 109.33146 * 341.54735 * 18 17 15 28 28 C 1.54833 * 108.23123 * 1.23177 * 27 18 17 29 29 H 1.09001 * 113.50218 * 139.07172 * 28 27 18 30 30 C 1.46756 * 125.33418 * 5.69750 * 13 11 10 31 31 N 1.34876 * 123.91552 * 16.03388 * 7 6 5 32 32 H 1.09002 * 109.47058 * 313.45975 * 1 2 3 33 33 H 1.09001 * 109.46867 * 73.45687 * 1 2 3 34 34 H 1.08994 * 109.46657 * 193.45505 * 1 2 3 35 35 H 1.09005 * 109.47385 * 309.89850 * 4 2 1 36 36 H 1.09003 * 109.47924 * 69.90757 * 4 2 1 37 37 H 1.08997 * 109.51262 * 189.25594 * 5 4 2 38 38 H 1.09008 * 109.50635 * 309.40703 * 5 4 2 39 39 H 1.08995 * 109.71318 * 70.83681 * 6 5 4 40 40 H 1.09003 * 109.71056 * 191.46116 * 6 5 4 41 41 H 1.07997 * 126.08210 * 179.83408 * 9 8 7 42 42 H 1.09000 * 109.76665 * 300.33638 * 14 13 11 43 43 H 1.08996 * 109.76799 * 61.06623 * 14 13 11 44 44 H 1.09003 * 110.01864 * 258.14160 * 17 15 14 45 45 H 1.09002 * 110.02207 * 19.52835 * 17 15 14 46 46 H 0.97008 * 119.99416 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.77044 * 120.34121 * 27 18 17 48 48 H 1.09003 * 109.77296 * 241.06843 * 27 18 17 49 49 H 1.08998 * 110.02176 * 280.86055 * 30 13 11 50 50 H 1.09007 * 110.01723 * 42.24992 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0464 -0.7286 -1.2455 5 6 3.5577 -0.9436 -1.1206 6 6 3.8319 -1.9738 -0.0180 7 6 3.0412 -1.5772 1.2073 8 7 3.2168 -2.0020 2.4293 9 6 2.3249 -1.4262 3.2380 10 6 1.5536 -0.5869 2.4811 11 6 0.4496 0.2588 2.9503 12 8 0.1666 1.2786 2.3498 13 7 -0.2508 -0.0942 4.0464 14 6 -1.4479 0.5908 4.5450 15 6 -1.9097 -0.1302 5.8212 16 1 -2.2485 0.5580 6.5955 17 6 -2.9701 -1.1847 5.4545 18 7 -2.6749 -2.3763 6.2586 19 6 -3.5509 -3.3979 6.5118 20 1 -4.5511 -3.3647 6.1057 21 6 -3.1530 -4.4767 7.2896 22 7 -1.9339 -4.5173 7.7841 23 14 -4.3482 -5.8699 7.6356 24 1 -4.2219 -6.9045 6.5778 25 1 -4.0372 -6.4723 8.9568 26 1 -5.7355 -5.3405 7.6471 27 6 -1.2944 -2.3019 6.7478 28 6 -0.6763 -0.9711 6.2536 29 1 -0.0624 -0.4720 7.0034 30 6 0.0613 -1.2280 4.9244 31 7 2.0208 -0.6954 1.1916 32 1 -0.3633 0.7069 0.7460 33 1 -0.3633 0.2926 -0.9851 34 1 -0.3632 -0.9994 0.2391 35 1 1.5482 -1.6941 -1.3344 36 1 1.8365 -0.1285 -2.1309 37 1 3.9528 -1.3103 -2.0679 38 1 4.0397 0.0002 -0.8651 39 1 3.5193 -2.9628 -0.3529 40 1 4.8958 -1.9846 0.2188 41 1 2.2316 -1.5900 4.3014 42 1 -1.2098 1.6295 4.7741 43 1 -2.2358 0.5505 3.7930 44 1 -3.9660 -0.8110 5.6929 45 1 -2.9057 -1.4254 4.3933 46 1 -1.6558 -5.2713 8.3273 47 1 -1.2881 -2.3174 7.8377 48 1 -0.7212 -3.1460 6.3640 49 1 -0.2888 -2.1565 4.4734 50 1 1.1360 -1.2798 5.0992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048831556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:02 Heat of formation + Delta-G solvation = 68.955709 kcal Electronic energy + Delta-G solvation = -31537.920736 eV Core-core repulsion = 27567.094241 eV Total energy + Delta-G solvation = -3970.826495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.59594 -40.09460 -38.17499 -37.30038 -35.08131 -33.84485 -32.40976 -30.90675 -30.51845 -30.00913 -28.94954 -27.26272 -25.68086 -25.46696 -23.73245 -23.12828 -22.39315 -21.58515 -20.24755 -19.94986 -19.38848 -18.93299 -17.28400 -16.89451 -16.50054 -16.08190 -15.67961 -15.36101 -15.05403 -14.81219 -14.71968 -14.49684 -14.18598 -13.72649 -13.65238 -13.43082 -13.23777 -13.10192 -12.79685 -12.46126 -12.20786 -12.02919 -11.86299 -11.79576 -11.63286 -11.49577 -11.48783 -11.39807 -10.97787 -10.82799 -10.80039 -10.49996 -10.28719 -10.13330 -9.98768 -9.92409 -9.72026 -9.71180 -9.67575 -8.63392 -8.56238 -8.32103 -6.86699 -5.75331 -3.08792 1.35387 2.30631 2.79931 3.18669 3.31951 3.38780 3.44089 3.45728 4.02113 4.17960 4.27336 4.32342 4.46242 4.51481 4.79925 4.84564 4.89528 4.97789 4.98131 5.04430 5.21373 5.23371 5.32699 5.36120 5.42243 5.48063 5.51495 5.52172 5.58282 5.60654 5.67091 5.75162 5.81358 5.84128 5.85997 6.07860 6.10085 6.17146 6.18750 6.30740 6.47265 6.54948 6.58361 6.63683 6.80897 7.01210 7.48559 7.51681 7.58874 7.77459 7.90203 8.17453 8.23025 9.19359 9.79371 10.42930 11.36232 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.002971 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.190337 B = 9421.568959 C =10083.231855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.136 3.864 3 H 0.095 0.905 4 C -0.133 4.133 5 C -0.127 4.127 6 C -0.035 4.035 7 C 0.223 3.777 8 N -0.490 5.490 9 C 0.026 3.974 10 C -0.073 4.073 11 C 0.607 3.393 12 O -0.546 6.546 13 N -0.595 5.595 14 C 0.123 3.877 15 C -0.109 4.109 16 H 0.098 0.902 17 C 0.144 3.856 18 N -0.602 5.602 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.188 3.812 28 C -0.123 4.123 29 H 0.092 0.908 30 C 0.100 3.900 31 N -0.418 5.418 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.189 0.811 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.036 0.964 45 H 0.017 0.983 46 H 0.253 0.747 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.081 0.919 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 9.905 -15.732 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.034 3.966 3 H 0.112 0.888 4 C -0.171 4.171 5 C -0.165 4.165 6 C -0.073 4.073 7 C -0.039 4.039 8 N -0.208 5.208 9 C -0.127 4.127 10 C -0.190 4.190 11 C 0.396 3.604 12 O -0.427 6.427 13 N -0.326 5.326 14 C 0.000 4.000 15 C -0.129 4.129 16 H 0.116 0.884 17 C 0.017 3.983 18 N -0.329 5.329 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.063 3.937 28 C -0.143 4.143 29 H 0.111 0.889 30 C -0.022 4.022 31 N -0.100 5.100 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.206 0.794 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.537 9.791 -15.892 21.435 hybrid contribution -1.232 -0.282 0.069 1.266 sum 9.305 9.508 -15.823 20.673 Atomic orbital electron populations 1.22666 0.92543 1.04541 1.05022 1.21620 0.96570 0.96320 0.82102 0.88752 1.22048 0.96328 1.01953 0.96736 1.21717 0.95816 0.99769 0.99187 1.20270 0.99409 0.99685 0.87976 1.23443 0.91410 0.93206 0.95838 1.69965 1.25198 1.25976 0.99681 1.23300 0.93842 0.95309 1.00282 1.20446 1.04357 1.08445 0.85717 1.16289 0.80318 0.84036 0.79728 1.90622 1.69705 1.25769 1.56617 1.47958 1.27960 1.31001 1.25692 1.21789 0.86207 0.96002 0.95979 1.22881 0.97063 0.97390 0.95556 0.88383 1.21317 0.95444 0.87050 0.94458 1.44200 1.10499 1.19543 1.58620 1.19036 0.93587 0.96534 1.26636 0.90425 1.24793 0.96886 0.98614 0.99994 1.69939 1.16765 1.31403 1.38759 0.86111 0.80007 0.82182 0.77407 1.21608 1.21635 1.20723 1.21193 0.84702 0.89674 0.98122 1.23470 0.95628 0.99886 0.95317 0.88931 1.22723 1.00071 0.89253 0.90175 1.45299 1.25375 1.32431 1.06886 0.87294 0.90962 0.92395 0.90459 0.89185 0.89760 0.91050 0.88937 0.88383 0.79442 0.91558 0.91237 0.94544 0.96518 0.93649 0.93256 0.93084 0.90126 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 8.47 37.16 0.31 -1.91 16 2 C 0.14 1.47 3.27 -67.83 -0.22 1.24 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -0.97 5.22 -26.52 -0.14 -1.11 16 5 C -0.13 -0.81 5.96 -26.46 -0.16 -0.97 16 6 C -0.03 -0.29 6.33 -27.48 -0.17 -0.47 16 7 C 0.22 2.93 7.64 -155.32 -1.19 1.74 16 8 N -0.49 -7.59 11.20 -10.35 -0.12 -7.71 16 9 C 0.03 0.40 10.57 -17.36 -0.18 0.21 16 10 C -0.07 -1.13 6.43 -82.35 -0.53 -1.66 16 11 C 0.61 9.82 6.97 -12.81 -0.09 9.73 16 12 O -0.55 -9.50 13.71 5.21 0.07 -9.43 16 13 N -0.59 -9.31 3.31 -173.72 -0.58 -9.88 16 14 C 0.12 1.82 6.20 -3.60 -0.02 1.80 16 15 C -0.11 -1.76 4.05 -88.47 -0.36 -2.11 16 16 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 17 C 0.14 2.84 6.45 -3.39 -0.02 2.81 16 18 N -0.60 -14.68 3.38 -171.16 -0.58 -15.25 16 19 C -0.23 -6.23 10.25 -15.06 -0.15 -6.38 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 22 N -0.92 -26.15 10.25 55.49 0.57 -25.58 16 23 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.19 4.24 4.73 -2.99 -0.01 4.22 16 28 C -0.12 -2.08 4.21 -87.76 -0.37 -2.45 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 C 0.10 1.58 5.19 -3.29 -0.02 1.56 16 31 N -0.42 -5.65 3.00 -102.72 -0.31 -5.95 16 32 H 0.11 1.57 4.37 -52.10 -0.23 1.34 16 33 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.47 8.12 -51.92 -0.42 0.05 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.19 2.61 4.95 -52.49 -0.26 2.35 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.04 7.61 -51.93 -0.40 0.64 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.02 0.35 7.55 -51.93 -0.39 -0.04 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 48 H 0.05 1.27 6.94 -51.93 -0.36 0.91 16 49 H 0.08 1.47 7.55 -51.93 -0.39 1.08 16 50 H 0.08 1.08 4.69 -51.93 -0.24 0.84 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -32.24 376.03 -11.40 -43.64 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.69 Total: 1.77 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -3.42 Total: 6.00 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -1.01 Total: -64.38 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.24 -11.40 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048831556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.597 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds