Wall clock time and date at job start Wed Apr 1 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.68660 * 2 1 4 4 C 1.53268 * 109.55301 * 120.36524 * 2 1 3 5 5 C 1.53168 * 109.43667 * 170.01077 * 4 2 1 6 6 C 1.53376 * 109.21828 * 290.64990 * 5 4 2 7 7 C 1.51118 * 108.23906 * 48.87620 * 6 5 4 8 8 N 1.30551 * 127.08445 * 163.89743 * 7 6 5 9 9 C 1.33460 * 109.68060 * 179.80768 * 8 7 6 10 10 C 1.36829 * 107.83530 * 0.42037 * 9 8 7 11 11 C 1.46762 * 126.91537 * 179.82947 * 10 9 8 12 12 O 1.21684 * 120.00129 * 206.17930 * 11 10 9 13 13 N 1.34772 * 120.00031 * 25.90574 * 11 10 9 14 14 C 1.46766 * 125.33353 * 355.30897 * 13 11 10 15 15 C 1.54160 * 106.58592 * 161.46428 * 14 13 11 16 16 H 1.08999 * 113.23119 * 151.14388 * 15 14 13 17 17 C 1.53680 * 109.50516 * 277.93393 * 15 14 13 18 18 N 1.46658 * 107.96696 * 126.92975 * 17 15 14 19 19 C 1.36940 * 125.33093 * 180.67143 * 18 17 15 20 20 H 1.07998 * 119.99810 * 185.22180 * 19 18 17 21 21 C 1.38814 * 120.00007 * 5.22018 * 19 18 17 22 22 N 1.31614 * 120.00188 * 353.65633 * 21 19 18 23 23 Si 1.86798 * 119.99950 * 173.65447 * 21 19 18 24 24 H 1.48504 * 109.47158 * 94.99381 * 23 21 19 25 25 H 1.48500 * 109.47090 * 214.99402 * 23 21 19 26 26 H 1.48501 * 109.47090 * 334.99324 * 23 21 19 27 27 C 1.46754 * 109.33444 * 0.70562 * 18 17 15 28 28 C 1.53982 * 106.67950 * 341.55727 * 27 18 17 29 29 H 1.08999 * 112.79917 * 151.33383 * 28 27 18 30 30 C 1.46651 * 125.33730 * 175.62225 * 13 11 10 31 31 N 1.34871 * 123.91996 * 343.94475 * 7 6 5 32 32 H 1.09002 * 109.46697 * 189.37656 * 1 2 3 33 33 H 1.08999 * 109.46693 * 309.37524 * 1 2 3 34 34 H 1.09001 * 109.47227 * 69.37499 * 1 2 3 35 35 H 1.08992 * 109.49336 * 50.01229 * 4 2 1 36 36 H 1.09002 * 109.47158 * 289.98921 * 4 2 1 37 37 H 1.08997 * 109.51088 * 170.72842 * 5 4 2 38 38 H 1.09000 * 109.50858 * 50.57332 * 5 4 2 39 39 H 1.09003 * 109.71030 * 289.19205 * 6 5 4 40 40 H 1.08997 * 109.70897 * 168.56611 * 6 5 4 41 41 H 1.08003 * 126.08269 * 180.26523 * 9 8 7 42 42 H 1.08999 * 110.01505 * 280.89057 * 14 13 11 43 43 H 1.09000 * 110.01446 * 42.27807 * 14 13 11 44 44 H 1.08998 * 109.76714 * 7.30437 * 17 15 14 45 45 H 1.08995 * 109.77793 * 246.56960 * 17 15 14 46 46 H 0.97001 * 120.00411 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.01668 * 222.25063 * 27 18 17 48 48 H 1.09001 * 110.05375 * 100.88529 * 27 18 17 49 49 H 1.09009 * 109.76604 * 300.31059 * 30 13 11 50 50 H 1.08995 * 109.77266 * 61.05336 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0430 -0.7301 1.2462 5 6 3.5541 -0.9484 1.1232 6 6 3.8271 -1.9794 0.0209 7 6 3.0392 -1.5807 -1.2054 8 7 3.2118 -2.0103 -2.4260 9 6 2.3216 -1.4332 -3.2357 10 6 1.5545 -0.5882 -2.4809 11 6 0.4521 0.2587 -2.9513 12 8 0.1658 1.2757 -2.3478 13 7 -0.2398 -0.0873 -4.0550 14 6 0.0687 -1.2261 -4.9279 15 6 -1.2069 -1.5126 -5.7448 16 1 -1.0025 -1.9498 -6.7221 17 6 -2.1747 -2.3605 -4.9045 18 7 -3.4746 -1.6815 -4.8889 19 6 -4.5914 -2.1240 -4.2315 20 1 -5.5287 -1.6000 -4.3464 21 6 -4.5186 -3.2460 -3.4174 22 7 -3.4120 -3.9571 -3.3742 23 14 -5.9915 -3.7466 -2.3832 24 1 -6.7865 -4.7656 -3.1146 25 1 -5.5211 -4.3167 -1.0952 26 1 -6.8376 -2.5555 -2.1177 27 6 -3.3911 -0.4541 -5.6890 28 6 -1.8946 -0.1217 -5.8336 29 1 -1.6688 0.4184 -6.7531 30 6 -1.4148 0.6191 -4.5756 31 7 2.0208 -0.6966 -1.1910 32 1 -0.3633 -1.0140 0.1674 33 1 -0.3633 0.6520 0.7944 34 1 -0.3634 0.3620 -0.9618 35 1 1.5425 -1.6943 1.3346 36 1 1.8336 -0.1293 2.1312 37 1 3.9471 -1.3160 2.0710 38 1 4.0385 -0.0058 0.8682 39 1 3.5114 -2.9676 0.3555 40 1 4.8913 -1.9930 -0.2142 41 1 2.2255 -1.6012 -4.2983 42 1 0.8928 -0.9726 -5.5947 43 1 0.3290 -2.0972 -4.3267 44 1 -1.7952 -2.4535 -3.8869 45 1 -2.2807 -3.3496 -5.3501 46 1 -3.3610 -4.7410 -2.8051 47 1 -3.9064 0.3597 -5.1786 48 1 -3.8337 -0.6175 -6.6716 49 1 -2.2056 0.6218 -3.8253 50 1 -1.1457 1.6438 -4.8314 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048831557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:04 Heat of formation + Delta-G solvation = 45.681578 kcal Electronic energy + Delta-G solvation = -32132.320643 eV Core-core repulsion = 28160.484905 eV Total energy + Delta-G solvation = -3971.835738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.62941 -41.44963 -39.59234 -38.13253 -36.62877 -34.67378 -34.23357 -31.90758 -31.80092 -31.62428 -30.17363 -28.23070 -27.45353 -26.89472 -25.16256 -23.99730 -23.36589 -22.82107 -21.71973 -20.97919 -20.85704 -19.87687 -18.92603 -18.38518 -17.67659 -17.42534 -16.77024 -16.70583 -16.43870 -16.20676 -15.67604 -15.49692 -15.27079 -15.13632 -14.71709 -14.57522 -14.39869 -14.31486 -13.98292 -13.67507 -13.56328 -13.48763 -13.37126 -13.05628 -12.95016 -12.75188 -12.69823 -12.64961 -12.12560 -12.07136 -12.03133 -11.91267 -11.78715 -11.67057 -11.57705 -11.48758 -11.34383 -10.93933 -10.75004 -10.69134 -9.71653 -9.45368 -8.87139 -7.88834 -5.21512 0.26174 1.25129 1.40372 1.41690 1.50551 1.74589 2.07799 2.17857 2.45816 3.18724 3.28516 3.29404 3.42698 3.44322 3.58069 3.64177 3.75411 3.82040 3.93616 3.98658 4.10749 4.20000 4.23079 4.27701 4.34130 4.39659 4.51542 4.54743 4.62737 4.63753 4.74815 4.79561 4.82578 4.84890 4.88172 4.89549 5.01626 5.02112 5.04356 5.10473 5.12483 5.23242 5.32219 5.40129 5.45421 5.47768 5.65918 5.78527 6.06013 6.20308 6.33377 6.79319 6.96528 7.10062 7.79807 8.40475 9.21085 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.003946 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.577948 B = 7094.042668 C = 8152.782261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.133 3.867 3 H 0.097 0.903 4 C -0.128 4.128 5 C -0.117 4.117 6 C -0.037 4.037 7 C 0.227 3.773 8 N -0.519 5.519 9 C 0.031 3.969 10 C -0.102 4.102 11 C 0.602 3.398 12 O -0.568 6.568 13 N -0.592 5.592 14 C 0.108 3.892 15 C -0.111 4.111 16 H 0.130 0.870 17 C 0.197 3.803 18 N -0.624 5.624 19 C -0.241 4.241 20 H 0.080 0.920 21 C -0.062 4.062 22 N -0.946 5.946 23 Si 0.968 3.032 24 H -0.284 1.284 25 H -0.298 1.298 26 H -0.270 1.270 27 C 0.136 3.864 28 C -0.091 4.091 29 H 0.144 0.856 30 C 0.127 3.873 31 N -0.424 5.424 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.199 0.801 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.006 0.994 45 H 0.004 0.996 46 H 0.244 0.756 47 H 0.036 0.964 48 H 0.035 0.965 49 H 0.037 0.963 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.072 7.994 3.847 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.032 3.968 3 H 0.115 0.885 4 C -0.166 4.166 5 C -0.155 4.155 6 C -0.076 4.076 7 C -0.035 4.035 8 N -0.238 5.238 9 C -0.123 4.123 10 C -0.218 4.218 11 C 0.393 3.607 12 O -0.451 6.451 13 N -0.323 5.323 14 C -0.014 4.014 15 C -0.131 4.131 16 H 0.148 0.852 17 C 0.072 3.928 18 N -0.351 5.351 19 C -0.370 4.370 20 H 0.098 0.902 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.797 3.203 24 H -0.210 1.210 25 H -0.225 1.225 26 H -0.195 1.195 27 C 0.011 3.989 28 C -0.110 4.110 29 H 0.162 0.838 30 C 0.005 3.995 31 N -0.105 5.105 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.216 0.784 42 H 0.129 0.871 43 H 0.085 0.915 44 H 0.025 0.975 45 H 0.022 0.978 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.376 7.944 4.266 18.694 hybrid contribution -2.048 -0.158 0.773 2.195 sum 14.328 7.786 5.039 17.067 Atomic orbital electron populations 1.22618 0.94320 1.01855 1.05993 1.21815 0.95122 0.96884 0.82990 0.88531 1.22097 0.97400 1.01458 0.95610 1.21726 0.94414 0.99421 0.99929 1.20583 0.99646 1.00730 0.86605 1.24387 0.90829 0.91605 0.96715 1.69956 1.26070 1.26994 1.00749 1.23272 0.93568 0.94543 1.00900 1.20481 1.04807 1.09489 0.87070 1.16491 0.80655 0.84112 0.79464 1.90653 1.70350 1.27238 1.56877 1.47855 1.29178 1.30035 1.25192 1.22447 0.98209 0.88206 0.92569 1.23177 0.93934 0.95892 1.00064 0.85217 1.20742 0.84023 0.92588 0.95478 1.44505 1.08750 1.23432 1.58369 1.19402 0.88999 1.08700 1.19897 0.90170 1.25568 0.99964 0.98466 1.01509 1.70192 1.27689 1.18743 1.42835 0.85206 0.78940 0.78117 0.78021 1.21034 1.22475 1.19467 1.21477 0.94666 0.88287 0.94500 1.22922 0.94775 0.95329 0.97958 0.83826 1.21809 0.86045 0.96348 0.95332 1.45552 1.25440 1.32600 1.06955 0.94164 0.88987 0.90746 0.91296 0.86559 0.86396 0.90700 0.87966 0.86597 0.78447 0.87052 0.91480 0.97542 0.97788 0.94702 0.94582 0.94689 0.94491 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.97 8.99 71.98 0.65 -5.32 16 2 C 0.13 3.42 3.27 45.09 0.15 3.56 16 3 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.13 -2.13 5.26 30.74 0.16 -1.97 16 5 C -0.12 -1.42 5.96 30.78 0.18 -1.24 16 6 C -0.04 -0.62 6.33 30.11 0.19 -0.43 16 7 C 0.23 6.28 7.63 138.30 1.06 7.33 16 8 N -0.52 -16.39 11.20 -186.67 -2.09 -18.48 16 9 C 0.03 0.98 9.99 84.11 0.84 1.82 16 10 C -0.10 -3.49 6.38 40.14 0.26 -3.24 16 11 C 0.60 22.34 6.65 86.47 0.57 22.91 16 12 O -0.57 -23.19 14.08 -4.30 -0.06 -23.25 16 13 N -0.59 -20.26 3.31 -821.79 -2.72 -22.97 16 14 C 0.11 3.18 4.42 86.72 0.38 3.56 16 15 C -0.11 -3.58 4.08 -9.34 -0.04 -3.62 16 16 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 17 C 0.20 9.40 4.80 86.58 0.42 9.82 16 18 N -0.62 -31.50 3.38 -697.72 -2.35 -33.86 16 19 C -0.24 -13.60 10.24 84.03 0.86 -12.74 16 20 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 21 C -0.06 -3.57 5.48 84.86 0.46 -3.11 16 22 N -0.95 -57.73 10.29 21.65 0.22 -57.51 16 23 Si 0.97 46.76 29.56 68.60 2.03 48.79 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.14 5.20 6.40 86.66 0.55 5.75 16 28 C -0.09 -2.67 4.08 -9.41 -0.04 -2.71 16 29 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 30 C 0.13 4.21 6.24 86.58 0.54 4.75 16 31 N -0.42 -12.92 3.00 -478.90 -1.44 -14.36 16 32 H 0.04 1.35 8.04 -2.39 -0.02 1.33 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 2.93 3.44 -17.39 -0.06 2.87 16 35 H 0.07 1.30 8.01 -2.39 -0.02 1.28 16 36 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.20 5.12 5.65 -2.91 -0.02 5.10 16 42 H 0.11 2.32 7.44 -2.39 -0.02 2.30 16 43 H 0.07 2.25 6.16 -2.39 -0.01 2.24 16 44 H 0.01 0.36 6.60 -2.39 -0.02 0.34 16 45 H 0.00 0.21 7.57 -2.39 -0.02 0.19 16 46 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 47 H 0.04 1.39 7.78 -2.39 -0.02 1.37 16 48 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.04 1.52 7.47 -2.38 -0.02 1.50 16 50 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -79.08 376.19 1.69 -77.39 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.90 Total: 19.12 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 7.20 Total: 25.13 kcal Atomic # 7 Polarization: -138.80 SS G_CDS: -8.38 Total: -147.17 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -79.08 1.69 -77.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048831557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.069 kcal (2) G-P(sol) polarization free energy of solvation -79.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds