Wall clock time and date at job start Wed Apr 1 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47528 * 2 1 4 4 N 1.28476 * 124.88079 * 269.69765 * 3 2 1 5 5 C 1.31802 * 110.06784 * 179.82291 * 4 3 2 6 6 C 1.47711 * 126.51532 * 180.17916 * 5 4 3 7 7 O 1.21576 * 119.99932 * 180.29894 * 6 5 4 8 8 N 1.34780 * 120.00177 * 0.29352 * 6 5 4 9 9 C 1.46670 * 125.33820 * 180.02562 * 8 6 5 10 10 C 1.53727 * 107.93964 * 180.54821 * 9 8 6 11 11 H 1.09001 * 112.56062 * 139.71801 * 10 9 8 12 12 C 1.53689 * 109.33944 * 266.25025 * 10 9 8 13 13 N 1.46638 * 108.01126 * 127.55868 * 12 10 9 14 14 C 1.36937 * 125.33180 * 180.81912 * 13 12 10 15 15 H 1.08001 * 119.99784 * 174.01360 * 14 13 12 16 16 C 1.38814 * 119.99979 * 354.00973 * 14 13 12 17 17 N 1.31622 * 119.99714 * 6.93933 * 16 14 13 18 18 Si 1.86799 * 120.00024 * 186.94618 * 16 14 13 19 19 H 1.48499 * 109.47035 * 94.98281 * 18 16 14 20 20 H 1.48499 * 109.46939 * 214.98563 * 18 16 14 21 21 H 1.48504 * 109.47125 * 334.98040 * 18 16 14 22 22 C 1.46746 * 109.34127 * 0.83681 * 13 12 10 23 23 C 1.53932 * 106.71793 * 341.65769 * 22 13 12 24 24 H 1.09001 * 113.00969 * 150.83152 * 23 22 13 25 25 C 1.46770 * 125.33379 * 359.69894 * 8 6 5 26 26 C 1.41503 * 106.96605 * 0.42717 * 5 4 3 27 27 C 1.35028 * 124.88838 * 89.99721 * 3 2 1 28 28 C 1.50705 * 126.38009 * 0.02562 * 27 3 2 29 29 C 1.53008 * 117.49328 * 213.74674 * 28 27 3 30 30 C 1.53002 * 117.49385 * 145.08866 * 28 27 3 31 31 H 1.08998 * 109.46688 * 59.99943 * 1 2 3 32 32 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46970 * 300.00118 * 1 2 3 34 34 H 1.08998 * 109.47142 * 119.99776 * 2 1 3 35 35 H 1.08998 * 109.47224 * 239.99427 * 2 1 3 36 36 H 1.09003 * 109.76999 * 300.16448 * 9 8 6 37 37 H 1.08997 * 109.77002 * 60.92527 * 9 8 6 38 38 H 1.08997 * 109.76735 * 247.20040 * 12 10 9 39 39 H 1.09004 * 109.76566 * 7.91633 * 12 10 9 40 40 H 0.96999 * 119.99251 * 180.02562 * 17 16 14 41 41 H 1.08999 * 110.01361 * 222.34787 * 22 13 12 42 42 H 1.08999 * 110.00805 * 100.97341 * 22 13 12 43 43 H 1.08999 * 110.03240 * 280.77047 * 25 8 6 44 44 H 1.09004 * 110.03358 * 42.19187 * 25 8 6 45 45 H 1.08005 * 127.24583 * 179.71433 * 26 5 4 46 46 H 1.09000 * 115.55397 * 359.41397 * 28 27 3 47 47 H 1.08996 * 117.49999 * 359.97438 * 29 28 27 48 48 H 1.09002 * 117.49515 * 145.02570 * 29 28 27 49 49 H 1.09004 * 117.49562 * 214.97127 * 30 28 27 50 50 H 1.08995 * 117.50376 * 359.97300 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2686 2.0720 -1.0539 5 6 2.6881 3.2752 -0.7170 6 6 3.0725 4.3625 -1.6400 7 8 3.4500 5.4302 -1.1978 8 7 3.0048 4.1709 -2.9724 9 6 3.3569 5.1653 -3.9914 10 6 3.1184 4.5332 -5.3722 11 1 2.6738 5.2319 -6.0809 12 6 4.4290 3.9122 -5.8809 13 7 4.1557 2.5215 -6.2571 14 6 5.0810 1.6355 -6.7411 15 1 4.8080 0.6028 -6.9004 16 6 6.3697 2.0649 -7.0269 17 7 6.7429 3.2857 -6.7065 18 14 7.5743 0.9100 -7.8665 19 1 7.5496 1.1491 -9.3319 20 1 8.9429 1.1594 -7.3472 21 1 7.1877 -0.4965 -7.5878 22 6 2.7353 2.2278 -6.0343 23 6 2.2037 3.3114 -5.0789 24 1 1.1441 3.5231 -5.2220 25 6 2.5736 2.9322 -3.6310 26 6 2.7059 3.3254 0.6970 27 6 2.2759 2.1094 1.1076 28 6 2.1149 1.6529 2.5348 29 6 1.6846 2.6979 3.5663 30 6 3.1231 2.1741 3.5610 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 2.7288 6.0488 -3.8769 37 1 4.4060 5.4426 -3.8890 38 1 4.7864 4.4654 -6.7494 39 1 5.1805 3.9395 -5.0918 40 1 7.6434 3.5857 -6.9066 41 1 2.6247 1.2433 -5.5799 42 1 2.1939 2.2658 -6.9795 43 1 3.3861 2.2056 -3.6283 44 1 1.7030 2.5211 -3.1200 45 1 3.0010 4.1584 1.3179 46 1 1.7450 0.6358 2.6643 47 1 1.5183 3.7154 3.2127 48 1 1.0320 2.3680 4.3747 49 1 3.4160 1.5000 4.3659 50 1 3.9028 2.8467 3.2038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048857598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:01 Heat of formation + Delta-G solvation = 107.627908 kcal Electronic energy + Delta-G solvation = -30933.546716 eV Core-core repulsion = 26964.397173 eV Total energy + Delta-G solvation = -3969.149543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.77345 -39.87409 -37.95887 -37.50091 -34.83361 -34.76573 -32.22711 -30.79460 -30.35835 -29.65588 -29.31216 -25.91287 -25.35501 -24.58487 -23.86555 -22.91072 -22.71628 -21.65945 -20.21082 -19.96406 -19.24906 -18.85186 -17.41041 -16.90799 -16.51744 -16.00420 -15.81287 -15.36176 -14.94888 -14.75364 -14.61421 -14.36667 -14.16954 -13.66227 -13.59510 -13.05532 -12.99224 -12.73971 -12.54593 -12.45217 -12.04267 -11.96852 -11.90623 -11.88225 -11.70349 -11.45410 -11.35570 -11.29573 -11.04139 -10.84837 -10.79418 -10.55550 -10.33432 -10.04787 -9.98963 -9.79867 -9.73013 -9.56778 -9.10096 -8.81372 -8.54497 -8.15489 -6.78548 -5.69984 -3.02376 1.65507 2.01271 2.32199 3.34737 3.41679 3.46499 3.49010 3.57039 3.70281 4.05303 4.22171 4.50433 4.52150 4.55994 4.63355 4.65168 4.66293 4.84817 4.94841 5.08112 5.17628 5.29159 5.29992 5.32587 5.40478 5.47635 5.53564 5.57217 5.66657 5.69067 5.70782 5.78062 5.79146 5.85260 5.92830 6.04911 6.13667 6.29854 6.37081 6.40245 6.54065 6.64093 6.66494 6.71203 6.82029 6.91040 7.59038 7.65296 7.84263 7.85958 7.96151 8.30439 8.49597 9.25134 9.86094 10.50803 11.41887 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.002929 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.212318 B = 9556.875285 C =10004.033148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.278 5.278 4 N -0.248 5.248 5 C -0.004 4.004 6 C 0.612 3.388 7 O -0.544 6.544 8 N -0.594 5.594 9 C 0.121 3.879 10 C -0.123 4.123 11 H 0.091 0.909 12 C 0.184 3.816 13 N -0.602 5.602 14 C -0.229 4.229 15 H 0.078 0.922 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.147 3.853 23 C -0.114 4.114 24 H 0.088 0.912 25 C 0.121 3.879 26 C -0.179 4.179 27 C 0.043 3.957 28 C -0.096 4.096 29 C -0.162 4.162 30 C -0.163 4.163 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.036 0.964 42 H 0.019 0.981 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.158 0.842 46 H 0.114 0.886 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 -4.844 18.673 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.067 5.067 4 N -0.083 5.083 5 C -0.164 4.164 6 C 0.399 3.601 7 O -0.421 6.421 8 N -0.325 5.325 9 C -0.001 4.001 10 C -0.143 4.143 11 H 0.109 0.891 12 C 0.060 3.940 13 N -0.328 5.328 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.020 3.980 23 C -0.134 4.134 24 H 0.106 0.894 25 C -0.002 4.002 26 C -0.207 4.207 27 C -0.081 4.081 28 C -0.115 4.115 29 C -0.200 4.200 30 C -0.200 4.200 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.175 0.825 46 H 0.132 0.868 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.407 -5.068 17.965 23.579 hybrid contribution 0.894 -0.247 0.124 0.936 sum -13.512 -5.315 18.089 23.196 Atomic orbital electron populations 1.22167 0.93510 1.03473 1.03594 1.21971 0.95897 0.77416 1.05386 1.45518 1.46289 1.12376 1.02467 1.73763 1.17044 1.04662 1.12832 1.21779 1.08042 0.92821 0.93724 1.16474 0.78077 0.85430 0.80095 1.90762 1.48777 1.25995 1.76546 1.48056 1.64078 1.16008 1.04401 1.21855 1.01021 0.90701 0.86522 1.23153 0.99468 0.96687 0.94974 0.89111 1.21115 0.89648 0.84474 0.98794 1.44203 1.02876 1.09479 1.76273 1.19020 0.90499 0.90705 1.35545 0.90453 1.24819 0.97458 0.96744 1.01263 1.69980 1.18396 1.16828 1.51310 0.86131 0.80640 0.79748 0.79444 1.21627 1.21826 1.20694 1.21141 0.86876 0.95114 0.94825 1.22994 0.98693 0.97065 0.94611 0.89410 1.22175 1.00254 0.86276 0.91479 1.21329 1.08063 0.97794 0.93467 1.20366 1.06136 0.92526 0.89069 1.20255 1.06881 0.99169 0.85235 1.23100 0.97914 0.98934 1.00031 1.23117 0.93203 1.03588 1.00140 0.91208 0.90083 0.91809 0.88395 0.87684 0.92161 0.90741 0.93463 0.93461 0.93735 0.94561 0.96306 0.90482 0.90453 0.82484 0.86789 0.87967 0.88112 0.88067 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.11 0.88 6.74 -4.04 -0.03 0.85 16 3 N -0.28 -3.34 3.30 -57.11 -0.19 -3.53 16 4 N -0.25 -3.82 9.18 33.42 0.31 -3.51 16 5 C 0.00 -0.06 6.96 -82.77 -0.58 -0.64 16 6 C 0.61 11.90 7.84 -12.39 -0.10 11.80 16 7 O -0.54 -11.72 17.23 5.30 0.09 -11.63 16 8 N -0.59 -11.23 3.31 -173.32 -0.57 -11.81 16 9 C 0.12 2.26 6.23 -3.57 -0.02 2.24 16 10 C -0.12 -2.32 4.02 -88.60 -0.36 -2.68 16 11 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 12 C 0.18 4.48 4.76 -3.61 -0.02 4.47 16 13 N -0.60 -15.26 3.37 -171.93 -0.58 -15.84 16 14 C -0.23 -6.39 10.24 -15.06 -0.15 -6.54 16 15 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 16 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 17 N -0.92 -27.22 10.30 55.49 0.57 -26.65 16 18 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 C 0.15 2.99 6.37 -3.42 -0.02 2.97 16 23 C -0.11 -1.98 4.19 -88.24 -0.37 -2.35 16 24 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 25 C 0.12 2.16 5.20 -3.28 -0.02 2.14 16 26 C -0.18 -2.53 9.86 -39.37 -0.39 -2.92 16 27 C 0.04 0.49 6.60 -82.21 -0.54 -0.05 16 28 C -0.10 -0.75 5.93 -91.76 -0.54 -1.29 16 29 C -0.16 -1.08 10.05 -26.68 -0.27 -1.34 16 30 C -0.16 -1.13 10.06 -26.69 -0.27 -1.40 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.51 7.13 -51.93 -0.37 0.14 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.51 7.44 -51.93 -0.39 1.13 16 38 H 0.05 1.27 7.32 -51.93 -0.38 0.89 16 39 H 0.05 1.30 6.67 -51.93 -0.35 0.96 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.04 0.72 7.95 -51.93 -0.41 0.30 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 1.60 7.72 -51.93 -0.40 1.20 16 44 H 0.08 1.27 6.49 -51.93 -0.34 0.93 16 45 H 0.16 2.07 8.06 -52.48 -0.42 1.65 16 46 H 0.11 0.66 7.18 -51.93 -0.37 0.29 16 47 H 0.10 0.76 7.94 -51.93 -0.41 0.35 16 48 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.83 7.97 -51.93 -0.41 0.41 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -34.38 397.74 -10.82 -45.19 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.03 Total: 0.23 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -3.39 Total: 4.28 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.46 Total: -61.33 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.38 -10.82 -45.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048857598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.821 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds