Wall clock time and date at job start Wed Apr 1 2020 02:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.54519 * 2 1 4 4 C 1.53139 * 109.50786 * 120.10857 * 2 1 3 5 5 C 1.53119 * 109.65101 * 189.61107 * 4 2 1 6 6 N 1.46574 * 108.85455 * 309.72420 * 5 4 2 7 7 C 1.34866 * 127.50266 * 197.09132 * 6 5 4 8 8 C 1.36569 * 106.79147 * 179.67983 * 7 6 5 9 9 C 1.47329 * 126.21052 * 180.02562 * 8 7 6 10 10 O 1.21614 * 119.99986 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99490 * 179.97438 * 9 8 7 12 12 C 1.46755 * 125.34136 * 359.69667 * 11 9 8 13 13 C 1.54159 * 106.59240 * 161.45462 * 12 11 9 14 14 H 1.08997 * 113.23122 * 151.14045 * 13 12 11 15 15 C 1.55518 * 110.00455 * 278.72582 * 13 12 11 16 16 N 1.46661 * 108.13975 * 126.67492 * 15 13 12 17 17 C 1.36936 * 125.33513 * 180.65334 * 16 15 13 18 18 H 1.08002 * 120.00368 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99530 * 0.03836 * 17 16 15 20 20 N 1.31617 * 120.00471 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47206 * 59.99917 * 21 19 17 23 23 H 1.48499 * 109.47159 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47219 * 300.00212 * 21 19 17 25 25 C 1.46760 * 109.33474 * 0.68792 * 16 15 13 26 26 C 1.53986 * 106.67816 * 341.55644 * 25 16 15 27 27 H 1.09005 * 112.79926 * 151.32920 * 26 25 16 28 28 C 1.46662 * 125.33101 * 179.97438 * 11 9 8 29 29 N 1.35895 * 107.57886 * 0.02562 * 8 7 6 30 30 C 1.29791 * 108.84705 * 0.02562 * 29 8 7 31 31 C 1.51107 * 127.17314 * 179.88896 * 30 29 8 32 32 H 1.08998 * 109.46791 * 180.11880 * 1 2 3 33 33 H 1.09003 * 109.46887 * 300.11957 * 1 2 3 34 34 H 1.09001 * 109.46760 * 60.11744 * 1 2 3 35 35 H 1.09000 * 109.46061 * 309.74933 * 4 2 1 36 36 H 1.08996 * 109.46221 * 69.72287 * 4 2 1 37 37 H 1.08998 * 109.83779 * 189.73914 * 5 4 2 38 38 H 1.09000 * 109.26002 * 69.36003 * 5 4 2 39 39 H 1.08008 * 126.60460 * 359.66166 * 7 6 5 40 40 H 1.09000 * 110.01782 * 280.88271 * 12 11 9 41 41 H 1.09005 * 110.01722 * 42.26823 * 12 11 9 42 42 H 1.09003 * 109.69476 * 6.98661 * 15 13 12 43 43 H 1.08995 * 109.68223 * 246.35484 * 15 13 12 44 44 H 0.96996 * 120.00540 * 179.97438 * 20 19 17 45 45 H 1.09003 * 110.01765 * 222.25676 * 25 16 15 46 46 H 1.08994 * 110.01702 * 100.85851 * 25 16 15 47 47 H 1.09001 * 109.76744 * 300.31794 * 28 11 9 48 48 H 1.09003 * 109.76629 * 61.04530 * 28 11 9 49 49 H 1.09003 * 109.71344 * 315.70546 * 31 30 29 50 50 H 1.08996 * 109.71722 * 76.31645 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0414 -0.7241 1.2487 5 6 3.5535 -0.5211 1.3787 6 7 4.1874 -0.8514 0.0990 7 6 5.4908 -1.1132 -0.1282 8 6 5.6140 -1.3735 -1.4632 9 6 6.8601 -1.7125 -2.1724 10 8 7.9087 -1.7815 -1.5603 11 7 6.8376 -1.9471 -3.4994 12 6 5.6418 -1.9033 -4.3490 13 6 6.1387 -1.7622 -5.8015 14 1 5.4598 -2.2008 -6.5327 15 6 6.4825 -0.2760 -6.1041 16 7 7.8520 -0.2213 -6.6263 17 6 8.5141 0.9193 -6.9949 18 1 9.5250 0.8595 -7.3703 19 6 7.8860 2.1524 -6.8856 20 7 6.6543 2.2253 -6.4274 21 14 8.7889 3.7083 -7.3891 22 1 9.1623 3.6217 -8.8237 23 1 7.9062 4.8834 -7.1769 24 1 10.0161 3.8566 -6.5663 25 6 8.4013 -1.5806 -6.6927 26 6 7.5297 -2.4549 -5.7723 27 1 7.4932 -3.4970 -6.0902 28 6 8.0035 -2.2919 -4.3196 29 7 4.3787 -1.2630 -2.0186 30 6 3.5276 -0.9512 -1.0896 31 6 2.0423 -0.7249 -1.2507 32 1 -0.3633 -1.0277 0.0021 33 1 -0.3633 0.5157 0.8889 34 1 -0.3633 0.5120 -0.8911 35 1 1.5432 -0.3223 2.1311 36 1 1.8269 -1.7894 1.1642 37 1 3.9480 -1.1704 2.1602 38 1 3.7563 0.5202 1.6288 39 1 6.2844 -1.1160 0.6045 40 1 5.0695 -2.8240 -4.2355 41 1 5.0253 -1.0450 -4.0816 42 1 6.4135 0.3109 -5.1882 43 1 5.7888 0.1173 -6.8471 44 1 6.2155 3.0870 -6.3507 45 1 9.4334 -1.5835 -6.3422 46 1 8.3533 -1.9528 -7.7160 47 1 8.7445 -1.4947 -4.2606 48 1 8.4390 -3.2268 -3.9667 49 1 1.8573 -0.1123 -2.1331 50 1 1.5335 -1.6832 -1.3549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048889673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:43 Heat of formation + Delta-G solvation = 53.567623 kcal Electronic energy + Delta-G solvation = -31092.114427 eV Core-core repulsion = 27120.620654 eV Total energy + Delta-G solvation = -3971.493773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.43109 -39.72762 -37.94322 -37.22534 -34.73083 -34.01346 -32.13419 -30.59060 -29.84738 -29.82878 -29.22705 -26.97213 -25.53604 -25.30967 -24.17407 -23.26716 -21.78804 -21.36829 -19.86206 -19.40121 -19.13580 -18.89837 -17.29818 -16.69783 -16.31025 -16.08084 -15.57363 -15.32206 -14.95436 -14.61850 -14.52944 -14.06135 -13.92601 -13.76221 -13.61987 -13.51742 -12.89322 -12.72622 -12.70268 -12.46615 -12.41749 -11.97096 -11.94070 -11.79279 -11.44482 -11.41427 -11.23481 -11.18670 -11.14569 -10.80959 -10.71318 -10.37690 -10.03323 -9.94280 -9.83885 -9.72974 -9.66117 -9.56919 -9.44910 -8.50170 -8.44785 -7.94520 -6.71323 -5.61640 -2.94697 1.72130 2.51252 2.52091 3.46849 3.50605 3.51862 3.53880 3.87749 3.96340 4.10844 4.20633 4.25888 4.58150 4.70964 4.75716 4.86249 4.94435 4.97102 5.15021 5.17600 5.20258 5.30980 5.32127 5.34660 5.41666 5.46139 5.57254 5.61337 5.68412 5.74332 5.80282 5.86359 5.87250 5.93016 6.08435 6.20691 6.24457 6.38889 6.49061 6.55471 6.62421 6.70804 6.78531 6.87487 6.98030 7.09356 7.67416 7.74112 7.88867 7.94827 8.08836 8.38079 8.67411 9.32788 9.93544 10.58311 11.49490 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.003157 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.881754 B = 8865.900322 C = 9849.464064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.130 4.130 5 C 0.102 3.898 6 N -0.456 5.456 7 C 0.030 3.970 8 C -0.049 4.049 9 C 0.614 3.386 10 O -0.557 6.557 11 N -0.589 5.589 12 C 0.124 3.876 13 C -0.129 4.129 14 H 0.090 0.910 15 C 0.191 3.809 16 N -0.602 5.602 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.146 3.854 26 C -0.113 4.113 27 H 0.087 0.913 28 C 0.124 3.876 29 N -0.446 5.446 30 C 0.206 3.794 31 C -0.028 4.028 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.186 0.814 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.042 0.958 44 H 0.251 0.749 45 H 0.036 0.964 46 H 0.019 0.981 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.099 0.901 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.192 -8.912 16.301 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.167 4.167 5 C -0.020 4.020 6 N -0.139 5.139 7 C -0.108 4.108 8 C -0.178 4.178 9 C 0.403 3.597 10 O -0.437 6.437 11 N -0.320 5.320 12 C 0.001 3.999 13 C -0.149 4.149 14 H 0.108 0.892 15 C 0.066 3.934 16 N -0.329 5.329 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.019 3.981 26 C -0.133 4.133 27 H 0.105 0.895 28 C 0.001 3.999 29 N -0.165 5.165 30 C -0.057 4.057 31 C -0.067 4.067 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.203 0.797 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.093 0.907 48 H 0.075 0.925 49 H 0.118 0.882 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.891 -8.785 15.971 22.917 hybrid contribution 0.742 1.038 0.612 1.415 sum -13.149 -7.748 16.583 22.537 Atomic orbital electron populations 1.21792 0.93635 1.02332 1.02459 1.21274 0.96791 1.00050 0.93648 0.90198 1.21955 0.92900 1.02357 0.99537 1.22032 0.94024 1.02482 0.83478 1.45303 1.07320 1.51740 1.09496 1.22335 0.86027 1.04273 0.98195 1.20529 0.92708 1.13046 0.91479 1.16453 0.86138 0.76777 0.80336 1.90751 1.31417 1.54755 1.66759 1.47862 1.10511 1.67179 1.06445 1.22055 0.86914 1.02219 0.88699 1.23630 0.95468 1.00487 0.95330 0.89165 1.21323 0.86013 0.87389 0.98700 1.44187 1.12200 1.00570 1.75912 1.18989 0.96853 0.83582 1.36138 0.90530 1.24784 0.96578 0.97505 1.01504 1.69960 1.11826 1.23470 1.51500 0.86215 0.78537 0.82893 0.78216 1.21213 1.21682 1.21247 1.21222 0.95356 0.86156 0.95370 1.22862 0.97004 0.99088 0.94316 0.89508 1.21777 0.88650 1.00062 0.89380 1.70546 0.99179 1.17239 1.29536 1.23569 0.96594 1.05115 0.80468 1.20299 0.84938 1.02166 0.99264 0.92249 0.92259 0.91820 0.89179 0.90535 0.88917 0.89513 0.79678 0.92716 0.88629 0.93214 0.93999 0.93841 0.94553 0.96370 0.90680 0.92512 0.88249 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.17 37.16 0.34 -0.33 16 2 C -0.10 -0.61 2.74 -90.36 -0.25 -0.86 16 3 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 4 C -0.13 -0.65 5.23 -26.60 -0.14 -0.78 16 5 C 0.10 0.67 6.96 -3.94 -0.03 0.64 16 6 N -0.46 -5.18 3.12 -113.49 -0.35 -5.53 16 7 C 0.03 0.43 11.32 -16.82 -0.19 0.24 16 8 C -0.05 -0.86 6.80 -82.97 -0.56 -1.43 16 9 C 0.61 12.65 7.83 -12.56 -0.10 12.55 16 10 O -0.56 -12.57 17.19 5.27 0.09 -12.48 16 11 N -0.59 -11.84 3.31 -173.53 -0.57 -12.41 16 12 C 0.12 2.31 5.15 -3.30 -0.02 2.29 16 13 C -0.13 -2.51 4.17 -87.39 -0.36 -2.87 16 14 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 15 C 0.19 4.79 4.86 -2.62 -0.01 4.78 16 16 N -0.60 -15.93 3.38 -170.72 -0.58 -16.51 16 17 C -0.23 -6.56 10.25 -15.06 -0.15 -6.72 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 20 N -0.92 -27.87 10.25 55.49 0.57 -27.30 16 21 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.15 3.12 6.40 -3.39 -0.02 3.10 16 26 C -0.11 -2.07 4.03 -88.47 -0.36 -2.43 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 28 C 0.12 2.42 6.22 -3.61 -0.02 2.39 16 29 N -0.45 -7.41 8.45 -7.00 -0.06 -7.47 16 30 C 0.21 2.66 7.64 -154.63 -1.18 1.48 16 31 C -0.03 -0.25 5.64 -27.49 -0.16 -0.40 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.27 8.12 -51.93 -0.42 -0.15 16 36 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.19 2.23 8.06 -52.48 -0.42 1.80 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.10 1.93 6.16 -51.93 -0.32 1.61 16 42 H 0.05 1.43 6.80 -51.93 -0.35 1.08 16 43 H 0.04 1.16 7.45 -51.93 -0.39 0.77 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.04 0.77 7.79 -51.93 -0.40 0.37 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 1.69 7.48 -51.93 -0.39 1.30 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -36.24 388.35 -11.54 -47.78 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.16 Total: -1.15 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -3.31 Total: 11.33 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -0.99 Total: -69.22 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.24 -11.54 -47.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048889673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.347 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds