Wall clock time and date at job start Wed Apr 1 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.54519 * 2 1 4 4 C 1.53139 * 109.50786 * 120.10857 * 2 1 3 5 5 C 1.53119 * 109.65101 * 189.61107 * 4 2 1 6 6 N 1.46574 * 108.85455 * 309.72420 * 5 4 2 7 7 C 1.34866 * 127.50266 * 197.09132 * 6 5 4 8 8 C 1.36569 * 106.79147 * 179.67983 * 7 6 5 9 9 C 1.47329 * 126.21052 * 180.02562 * 8 7 6 10 10 O 1.21614 * 119.99986 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99490 * 179.97438 * 9 8 7 12 12 C 1.46755 * 125.34136 * 359.69667 * 11 9 8 13 13 C 1.54159 * 106.59240 * 161.45462 * 12 11 9 14 14 H 1.08997 * 113.23122 * 151.14045 * 13 12 11 15 15 C 1.55518 * 110.00455 * 278.72582 * 13 12 11 16 16 N 1.46661 * 108.13975 * 126.67492 * 15 13 12 17 17 C 1.36936 * 125.33513 * 180.65334 * 16 15 13 18 18 H 1.08002 * 120.00368 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99530 * 0.03836 * 17 16 15 20 20 N 1.31617 * 120.00471 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47206 * 59.99917 * 21 19 17 23 23 H 1.48499 * 109.47159 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47219 * 300.00212 * 21 19 17 25 25 C 1.46760 * 109.33474 * 0.68792 * 16 15 13 26 26 C 1.53986 * 106.67816 * 341.55644 * 25 16 15 27 27 H 1.09005 * 112.79926 * 151.32920 * 26 25 16 28 28 C 1.46662 * 125.33101 * 179.97438 * 11 9 8 29 29 N 1.35895 * 107.57886 * 0.02562 * 8 7 6 30 30 C 1.29791 * 108.84705 * 0.02562 * 29 8 7 31 31 C 1.51107 * 127.17314 * 179.88896 * 30 29 8 32 32 H 1.08998 * 109.46791 * 180.11880 * 1 2 3 33 33 H 1.09003 * 109.46887 * 300.11957 * 1 2 3 34 34 H 1.09001 * 109.46760 * 60.11744 * 1 2 3 35 35 H 1.09000 * 109.46061 * 309.74933 * 4 2 1 36 36 H 1.08996 * 109.46221 * 69.72287 * 4 2 1 37 37 H 1.08998 * 109.83779 * 189.73914 * 5 4 2 38 38 H 1.09000 * 109.26002 * 69.36003 * 5 4 2 39 39 H 1.08008 * 126.60460 * 359.66166 * 7 6 5 40 40 H 1.09000 * 110.01782 * 280.88271 * 12 11 9 41 41 H 1.09005 * 110.01722 * 42.26823 * 12 11 9 42 42 H 1.09003 * 109.69476 * 6.98661 * 15 13 12 43 43 H 1.08995 * 109.68223 * 246.35484 * 15 13 12 44 44 H 0.96996 * 120.00540 * 179.97438 * 20 19 17 45 45 H 1.09003 * 110.01765 * 222.25676 * 25 16 15 46 46 H 1.08994 * 110.01702 * 100.85851 * 25 16 15 47 47 H 1.09001 * 109.76744 * 300.31794 * 28 11 9 48 48 H 1.09003 * 109.76629 * 61.04530 * 28 11 9 49 49 H 1.09003 * 109.71344 * 315.70546 * 31 30 29 50 50 H 1.08996 * 109.71722 * 76.31645 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0414 -0.7241 1.2487 5 6 3.5535 -0.5211 1.3787 6 7 4.1874 -0.8514 0.0990 7 6 5.4908 -1.1132 -0.1282 8 6 5.6140 -1.3735 -1.4632 9 6 6.8601 -1.7125 -2.1724 10 8 7.9087 -1.7815 -1.5603 11 7 6.8376 -1.9471 -3.4994 12 6 5.6418 -1.9033 -4.3490 13 6 6.1387 -1.7622 -5.8015 14 1 5.4598 -2.2008 -6.5327 15 6 6.4825 -0.2760 -6.1041 16 7 7.8520 -0.2213 -6.6263 17 6 8.5141 0.9193 -6.9949 18 1 9.5250 0.8595 -7.3703 19 6 7.8860 2.1524 -6.8856 20 7 6.6543 2.2253 -6.4274 21 14 8.7889 3.7083 -7.3891 22 1 9.1623 3.6217 -8.8237 23 1 7.9062 4.8834 -7.1769 24 1 10.0161 3.8566 -6.5663 25 6 8.4013 -1.5806 -6.6927 26 6 7.5297 -2.4549 -5.7723 27 1 7.4932 -3.4970 -6.0902 28 6 8.0035 -2.2919 -4.3196 29 7 4.3787 -1.2630 -2.0186 30 6 3.5276 -0.9512 -1.0896 31 6 2.0423 -0.7249 -1.2507 32 1 -0.3633 -1.0277 0.0021 33 1 -0.3633 0.5157 0.8889 34 1 -0.3633 0.5120 -0.8911 35 1 1.5432 -0.3223 2.1311 36 1 1.8269 -1.7894 1.1642 37 1 3.9480 -1.1704 2.1602 38 1 3.7563 0.5202 1.6288 39 1 6.2844 -1.1160 0.6045 40 1 5.0695 -2.8240 -4.2355 41 1 5.0253 -1.0450 -4.0816 42 1 6.4135 0.3109 -5.1882 43 1 5.7888 0.1173 -6.8471 44 1 6.2155 3.0870 -6.3507 45 1 9.4334 -1.5835 -6.3422 46 1 8.3533 -1.9528 -7.7160 47 1 8.7445 -1.4947 -4.2606 48 1 8.4390 -3.2268 -3.9667 49 1 1.8573 -0.1123 -2.1331 50 1 1.5335 -1.6832 -1.3549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048889673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:42 Heat of formation + Delta-G solvation = 31.218160 kcal Electronic energy + Delta-G solvation = -31093.083573 eV Core-core repulsion = 27120.620654 eV Total energy + Delta-G solvation = -3972.462918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.44565 -41.30717 -39.44813 -38.01363 -36.55203 -34.89594 -34.07225 -31.78376 -31.53354 -31.04137 -30.34394 -27.99322 -27.27657 -26.98138 -25.16105 -24.56790 -23.12695 -22.16012 -21.68513 -20.83951 -20.33218 -20.02524 -18.87117 -18.32191 -17.58736 -17.26267 -16.89062 -16.70724 -16.38569 -15.75833 -15.57897 -15.48484 -15.26745 -14.94116 -14.63868 -14.55965 -14.32437 -14.16644 -14.08594 -13.64246 -13.57876 -13.33948 -13.18672 -13.10557 -12.96077 -12.75151 -12.67402 -12.51703 -12.05015 -12.01004 -11.86639 -11.85047 -11.71446 -11.65873 -11.57754 -11.34239 -11.21838 -10.93567 -10.68220 -10.66779 -9.75141 -9.35213 -8.86397 -7.84261 -5.19550 0.52460 1.37192 1.41718 1.46195 1.51864 1.63537 2.12235 2.47968 2.48871 3.10754 3.32574 3.41116 3.52939 3.60066 3.65442 3.72309 3.82313 3.92219 3.95544 4.04043 4.27257 4.29849 4.35079 4.36994 4.38139 4.44997 4.58880 4.69333 4.71793 4.76852 4.78768 4.87756 4.90533 4.93166 4.98799 5.00079 5.02497 5.07013 5.11666 5.15494 5.31396 5.35689 5.40768 5.46681 5.47359 5.53577 5.68001 5.80032 6.08676 6.22093 6.52182 6.80204 7.11667 7.17023 7.81071 8.43087 9.25157 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.003157 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.881754 B = 8865.900322 C = 9849.464064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.123 4.123 5 C 0.091 3.909 6 N -0.447 5.447 7 C 0.045 3.955 8 C -0.096 4.096 9 C 0.604 3.396 10 O -0.591 6.591 11 N -0.598 5.598 12 C 0.137 3.863 13 C -0.117 4.117 14 H 0.123 0.877 15 C 0.205 3.795 16 N -0.625 5.625 17 C -0.244 4.244 18 H 0.082 0.918 19 C -0.067 4.067 20 N -0.949 5.949 21 Si 0.977 3.023 22 H -0.272 1.272 23 H -0.294 1.294 24 H -0.282 1.282 25 C 0.138 3.862 26 C -0.093 4.093 27 H 0.138 0.862 28 C 0.123 3.877 29 N -0.482 5.482 30 C 0.207 3.793 31 C -0.028 4.028 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.204 0.796 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.001 0.999 43 H 0.006 0.994 44 H 0.244 0.756 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.034 0.966 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.648 -10.338 17.579 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.160 4.160 5 C -0.029 4.029 6 N -0.128 5.128 7 C -0.097 4.097 8 C -0.224 4.224 9 C 0.395 3.605 10 O -0.474 6.474 11 N -0.328 5.328 12 C 0.014 3.986 13 C -0.137 4.137 14 H 0.141 0.859 15 C 0.079 3.921 16 N -0.351 5.351 17 C -0.373 4.373 18 H 0.100 0.900 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.805 3.195 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.208 1.208 25 C 0.013 3.987 26 C -0.113 4.113 27 H 0.156 0.844 28 C 0.001 3.999 29 N -0.202 5.202 30 C -0.057 4.057 31 C -0.067 4.067 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.220 0.780 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.019 0.981 43 H 0.025 0.975 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.098 0.902 49 H 0.108 0.892 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.359 -10.238 17.244 25.260 hybrid contribution 1.174 1.515 0.274 1.937 sum -14.184 -8.723 17.518 24.170 Atomic orbital electron populations 1.21758 0.92131 1.02992 1.02872 1.21255 0.97903 0.99235 0.92931 0.91130 1.21984 0.91583 1.02566 0.99908 1.22525 0.95005 1.03764 0.81617 1.45612 1.06270 1.50017 1.10880 1.22578 0.87573 1.02289 0.97220 1.20378 0.92374 1.16743 0.92919 1.16992 0.86947 0.76092 0.80506 1.90697 1.32806 1.56423 1.67426 1.48021 1.10960 1.67150 1.06678 1.21953 0.86369 1.02603 0.87646 1.23553 0.97054 0.96443 0.96629 0.85873 1.20968 0.85131 0.90801 0.95168 1.44501 1.12853 1.02038 1.75721 1.19414 0.97299 0.84936 1.35619 0.90050 1.25661 0.97505 1.00701 1.02133 1.70214 1.13282 1.23491 1.52777 0.85169 0.77174 0.78727 0.78381 1.19756 1.21978 1.20832 1.21452 0.95838 0.84404 0.96981 1.22900 0.94819 1.00940 0.92596 0.84407 1.21772 0.88056 0.99548 0.90551 1.70435 0.99325 1.19043 1.31349 1.24283 0.97787 1.03227 0.80432 1.20516 0.82488 1.03206 1.00507 0.91451 0.90878 0.92436 0.86167 0.90204 0.86557 0.88349 0.77966 0.89927 0.90808 0.98115 0.97539 0.94641 0.94570 0.94576 0.94759 0.90241 0.89236 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.17 71.98 0.66 -0.27 16 2 C -0.09 -0.96 2.74 -10.62 -0.03 -0.99 16 3 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 4 C -0.12 -0.80 5.23 30.68 0.16 -0.64 16 5 C 0.09 0.93 6.96 86.41 0.60 1.53 16 6 N -0.45 -9.62 3.12 -512.98 -1.60 -11.22 16 7 C 0.04 1.26 11.32 83.84 0.95 2.21 16 8 C -0.10 -3.52 6.80 40.52 0.28 -3.25 16 9 C 0.60 25.90 7.83 86.64 0.68 26.58 16 10 O -0.59 -27.81 17.19 -4.07 -0.07 -27.88 16 11 N -0.60 -24.59 3.31 -821.17 -2.72 -27.31 16 12 C 0.14 5.11 5.15 86.72 0.45 5.56 16 13 C -0.12 -4.47 4.17 -8.70 -0.04 -4.51 16 14 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 15 C 0.20 10.74 4.86 87.22 0.42 11.16 16 16 N -0.62 -33.96 3.38 -694.02 -2.34 -36.30 16 17 C -0.24 -14.47 10.25 84.03 0.86 -13.60 16 18 H 0.08 4.61 7.83 -2.91 -0.02 4.58 16 19 C -0.07 -4.04 5.48 84.86 0.47 -3.57 16 20 N -0.95 -60.31 10.25 21.65 0.22 -60.08 16 21 Si 0.98 48.35 29.55 68.60 2.03 50.38 16 22 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 25 C 0.14 5.86 6.40 86.66 0.55 6.41 16 26 C -0.09 -3.26 4.03 -9.40 -0.04 -3.29 16 27 H 0.14 3.55 8.14 -2.38 -0.02 3.53 16 28 C 0.12 4.83 6.22 86.57 0.54 5.37 16 29 N -0.48 -16.44 8.45 -176.07 -1.49 -17.92 16 30 C 0.21 5.29 7.64 138.05 1.05 6.34 16 31 C -0.03 -0.47 5.64 30.10 0.17 -0.30 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.12 0.15 8.12 -2.39 -0.02 0.13 16 36 H 0.08 0.53 8.11 -2.39 -0.02 0.51 16 37 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.20 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.07 3.13 6.16 -2.38 -0.01 3.12 16 42 H 0.00 0.04 6.80 -2.39 -0.02 0.02 16 43 H 0.01 0.37 7.45 -2.39 -0.02 0.36 16 44 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.04 1.53 7.79 -2.39 -0.02 1.51 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.03 1.60 7.48 -2.39 -0.02 1.59 16 48 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 49 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.11 1.43 8.11 -2.39 -0.02 1.41 16 Total: -1.00 -85.42 388.35 2.70 -82.72 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.93 Total: 12.88 kcal Atomic # 6 Polarization: 27.00 SS G_CDS: 7.74 Total: 34.73 kcal Atomic # 7 Polarization: -144.92 SS G_CDS: -7.92 Total: -152.84 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.07 Total: -27.88 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -85.42 2.70 -82.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048889673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.940 kcal (2) G-P(sol) polarization free energy of solvation -85.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds