Wall clock time and date at job start Wed Apr 1 2020 02:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46259 * 2 1 4 4 C 1.53141 * 109.45654 * 240.02912 * 2 1 3 5 5 C 1.53386 * 109.25349 * 170.19444 * 4 2 1 6 6 C 1.51106 * 108.19191 * 48.94288 * 5 4 2 7 7 N 1.29794 * 127.17295 * 164.06640 * 6 5 4 8 8 C 1.35891 * 108.84952 * 180.02562 * 7 6 5 9 9 C 1.47326 * 126.20750 * 179.97438 * 8 7 6 10 10 O 1.21624 * 119.99458 * 180.02562 * 9 8 7 11 11 N 1.34770 * 120.00407 * 0.02562 * 9 8 7 12 12 C 1.46759 * 125.33527 * 359.69828 * 11 9 8 13 13 C 1.54158 * 106.58998 * 161.46025 * 12 11 9 14 14 H 1.08995 * 113.23277 * 151.13918 * 13 12 11 15 15 C 1.53679 * 109.50351 * 277.93104 * 13 12 11 16 16 N 1.46657 * 107.96818 * 126.92900 * 15 13 12 17 17 C 1.36939 * 125.33116 * 180.66893 * 16 15 13 18 18 H 1.08001 * 120.00078 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00029 * 0.04324 * 17 16 15 20 20 N 1.31619 * 120.00104 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00003 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47101 * 59.99848 * 21 19 17 23 23 H 1.48496 * 109.47278 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47100 * 300.00044 * 21 19 17 25 25 C 1.46749 * 109.33295 * 0.70441 * 16 15 13 26 26 C 1.53984 * 106.68221 * 341.56073 * 25 16 15 27 27 H 1.08996 * 112.80029 * 151.33357 * 26 25 16 28 28 C 1.46658 * 125.33502 * 179.97438 * 11 9 8 29 29 C 1.36567 * 107.57619 * 359.97312 * 8 7 6 30 30 N 1.34864 * 106.79008 * 359.97110 * 29 8 7 31 31 C 1.46582 * 127.50221 * 180.14567 * 30 29 8 32 32 H 1.08994 * 109.47431 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46683 * 299.97267 * 1 2 3 34 34 H 1.09000 * 109.47070 * 59.96901 * 1 2 3 35 35 H 1.09002 * 109.51089 * 50.26248 * 4 2 1 36 36 H 1.09000 * 109.50869 * 290.13162 * 4 2 1 37 37 H 1.08993 * 109.72028 * 289.26511 * 5 4 2 38 38 H 1.08999 * 109.75374 * 168.63364 * 5 4 2 39 39 H 1.09002 * 110.01390 * 280.88307 * 12 11 9 40 40 H 1.08997 * 110.01913 * 42.26505 * 12 11 9 41 41 H 1.09005 * 109.76509 * 7.29993 * 15 13 12 42 42 H 1.09004 * 109.76690 * 246.56021 * 15 13 12 43 43 H 0.97001 * 120.00145 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.02172 * 222.25195 * 25 16 15 45 45 H 1.09009 * 110.01680 * 100.86417 * 25 16 15 46 46 H 1.08999 * 109.76682 * 300.31735 * 28 11 9 47 47 H 1.08996 * 109.76641 * 61.04785 * 28 11 9 48 48 H 1.08002 * 126.60104 * 179.97438 * 29 8 7 49 49 H 1.08998 * 109.58608 * 42.95563 * 31 30 29 50 50 H 1.08999 * 109.58585 * 282.53317 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0402 -0.7213 -1.2509 5 6 3.5541 -0.5085 -1.3755 6 6 4.1859 -0.8203 -0.0387 7 7 5.4420 -1.0405 0.2027 8 6 5.5979 -1.2831 1.5307 9 6 6.8667 -1.5796 2.2181 10 8 6.8759 -1.7803 3.4177 11 7 8.0172 -1.6285 1.5179 12 6 8.1404 -1.4123 0.0715 13 6 9.6244 -1.0968 -0.2015 14 1 9.9521 -1.3985 -1.1963 15 6 9.8952 0.3878 0.0892 16 7 11.0269 0.4677 1.0186 17 6 11.5571 1.6251 1.5231 18 1 12.3944 1.5836 2.2040 19 6 11.0181 2.8516 1.1596 20 7 9.9978 2.9022 0.3297 21 14 11.7410 4.4304 1.8484 22 1 13.1687 4.5347 1.4535 23 1 10.9917 5.5940 1.3101 24 1 11.6368 4.4175 3.3297 25 6 11.5025 -0.8869 1.3225 26 6 10.3658 -1.8515 0.9368 27 1 10.7289 -2.8362 0.6428 28 6 9.3415 -1.9118 2.0809 29 6 4.3649 -1.2020 2.1122 30 7 3.4886 -0.9122 1.1289 31 6 2.0406 -0.7209 1.2517 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5134 0.8903 34 1 -0.3633 0.5143 -0.8897 35 1 1.5421 -0.3177 -2.1324 36 1 1.8280 -1.7873 -1.1683 37 1 3.7588 0.5272 -1.6464 38 1 3.9583 -1.1748 -2.1376 39 1 7.8423 -2.3120 -0.4669 40 1 7.5185 -0.5710 -0.2343 41 1 9.0135 0.8415 0.5419 42 1 10.1419 0.9059 -0.8376 43 1 9.6210 3.7593 0.0760 44 1 11.7220 -0.9754 2.3865 45 1 12.3950 -1.1091 0.7373 46 1 9.5880 -1.1659 2.8365 47 1 9.3468 -2.9056 2.5284 48 1 4.1357 -1.3428 3.1582 49 1 1.8252 -0.1181 2.1339 50 1 1.5502 -1.6903 1.3405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048891292.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:52 Heat of formation + Delta-G solvation = 31.475415 kcal Electronic energy + Delta-G solvation = -31076.024635 eV Core-core repulsion = 27103.572872 eV Total energy + Delta-G solvation = -3972.451763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.45664 -41.35325 -39.48315 -38.06505 -36.54472 -34.51746 -34.05175 -32.58086 -31.63473 -31.25614 -29.78893 -27.95101 -27.27199 -26.77859 -25.15481 -24.59768 -23.14268 -22.36610 -21.72624 -20.84337 -20.27952 -20.03040 -18.88525 -18.36237 -17.54500 -17.23495 -17.01460 -16.61420 -16.34965 -15.84329 -15.57919 -15.40757 -15.36153 -14.86726 -14.68775 -14.61533 -14.31782 -14.16840 -14.04163 -13.64824 -13.56617 -13.38390 -13.29439 -13.10086 -12.94080 -12.75376 -12.67013 -12.42605 -12.04449 -12.03368 -11.91775 -11.86292 -11.73157 -11.63997 -11.55975 -11.36039 -11.24981 -10.95455 -10.68146 -10.66986 -9.75301 -9.35533 -8.85953 -7.84016 -5.19196 0.51650 1.36976 1.41722 1.46177 1.51838 1.61769 2.12019 2.47849 2.48918 3.13115 3.32642 3.38632 3.46261 3.57977 3.64886 3.70474 3.83103 3.95251 3.98693 4.04055 4.24651 4.29791 4.35974 4.37755 4.39775 4.46818 4.56715 4.59295 4.69396 4.71037 4.78702 4.89306 4.93755 4.94326 4.98934 5.00720 5.04194 5.10623 5.12559 5.15986 5.28997 5.33143 5.40840 5.41556 5.47297 5.53321 5.68545 5.80524 6.07784 6.22416 6.51957 6.79835 7.11863 7.16748 7.81353 8.43225 9.25334 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.003096 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.458507 B = 9042.575538 C =10052.540480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.035 4.035 6 C 0.207 3.793 7 N -0.481 5.481 8 C -0.095 4.095 9 C 0.604 3.396 10 O -0.591 6.591 11 N -0.598 5.598 12 C 0.136 3.864 13 C -0.116 4.116 14 H 0.123 0.877 15 C 0.203 3.797 16 N -0.625 5.625 17 C -0.244 4.244 18 H 0.081 0.919 19 C -0.067 4.067 20 N -0.948 5.948 21 Si 0.977 3.023 22 H -0.272 1.272 23 H -0.294 1.294 24 H -0.282 1.282 25 C 0.138 3.862 26 C -0.092 4.092 27 H 0.140 0.860 28 C 0.123 3.877 29 C 0.044 3.956 30 N -0.447 5.447 31 C 0.097 3.903 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.002 0.998 42 H 0.007 0.993 43 H 0.244 0.756 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.080 0.920 48 H 0.203 0.797 49 H 0.104 0.896 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.076 -11.820 -5.429 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.074 4.074 6 C -0.058 4.058 7 N -0.201 5.201 8 C -0.223 4.223 9 C 0.395 3.605 10 O -0.474 6.474 11 N -0.328 5.328 12 C 0.014 3.986 13 C -0.136 4.136 14 H 0.141 0.859 15 C 0.078 3.922 16 N -0.351 5.351 17 C -0.373 4.373 18 H 0.099 0.901 19 C -0.260 4.260 20 N -0.597 5.597 21 Si 0.806 3.194 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.209 1.209 25 C 0.013 3.987 26 C -0.111 4.111 27 H 0.158 0.842 28 C 0.000 4.000 29 C -0.098 4.098 30 N -0.128 5.128 31 C -0.023 4.023 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.020 0.980 42 H 0.025 0.975 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.098 0.902 48 H 0.219 0.781 49 H 0.123 0.877 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.648 -11.691 -5.331 25.174 hybrid contribution 0.184 1.412 1.345 1.959 sum -21.464 -10.279 -3.986 24.130 Atomic orbital electron populations 1.21723 0.91181 1.03309 1.03326 1.21492 0.98382 0.99633 0.92867 0.90813 1.21771 0.92413 1.01850 0.98961 1.20464 0.95514 1.03804 0.87583 1.24355 0.86602 1.03627 0.91184 1.70442 1.17155 1.18408 1.14078 1.20373 0.93462 1.16825 0.91645 1.16986 0.82319 0.76227 0.85010 1.90699 1.87166 1.54448 1.15052 1.48018 1.06451 1.67943 1.10368 1.21982 0.95616 1.01803 0.79212 1.23223 0.94442 0.95873 1.00041 0.85946 1.20664 0.89101 0.90875 0.91552 1.44528 1.36217 1.01401 1.52985 1.19408 1.11700 0.84338 1.21850 0.90098 1.25663 0.98999 1.00815 1.00556 1.70222 1.26911 1.23803 1.38720 0.85170 0.77824 0.78807 0.77648 1.19787 1.21968 1.20866 1.21457 0.95208 0.84076 0.97994 1.22909 0.94355 1.00170 0.93708 0.84232 1.21781 0.81596 1.00104 0.96479 1.22564 0.88398 1.02719 0.96107 1.45570 1.09948 1.50411 1.06837 1.22587 0.74132 1.03816 1.01746 0.91162 0.91752 0.90791 0.87534 0.90438 0.88977 0.87703 0.89960 0.90804 0.98026 0.97512 0.94670 0.94605 0.94580 0.94745 0.90208 0.78058 0.87727 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 9.17 71.98 0.66 0.11 16 2 C -0.10 -0.91 2.72 -10.68 -0.03 -0.94 16 3 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 4 C -0.11 -0.97 5.25 30.77 0.16 -0.81 16 5 C -0.03 -0.56 6.33 30.11 0.19 -0.37 16 6 C 0.21 5.29 7.64 138.05 1.05 6.34 16 7 N -0.48 -16.43 8.45 -176.08 -1.49 -17.91 16 8 C -0.10 -3.50 6.80 40.52 0.28 -3.22 16 9 C 0.60 25.95 7.83 86.64 0.68 26.63 16 10 O -0.59 -27.87 17.19 -4.11 -0.07 -27.94 16 11 N -0.60 -24.59 3.31 -821.17 -2.72 -27.31 16 12 C 0.14 5.10 5.12 86.72 0.44 5.55 16 13 C -0.12 -4.44 4.08 -9.34 -0.04 -4.48 16 14 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 15 C 0.20 10.65 4.79 86.58 0.41 11.06 16 16 N -0.63 -33.94 3.37 -697.70 -2.35 -36.30 16 17 C -0.24 -14.48 10.25 84.03 0.86 -13.62 16 18 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 19 C -0.07 -4.06 5.48 84.86 0.47 -3.59 16 20 N -0.95 -60.13 10.25 21.65 0.22 -59.91 16 21 Si 0.98 48.36 29.55 68.60 2.03 50.38 16 22 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 24 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 25 C 0.14 5.82 6.40 86.66 0.55 6.38 16 26 C -0.09 -3.21 4.08 -9.40 -0.04 -3.24 16 27 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 28 C 0.12 4.81 6.24 86.58 0.54 5.35 16 29 C 0.04 1.24 11.32 83.84 0.95 2.19 16 30 N -0.45 -9.83 3.11 -512.82 -1.60 -11.42 16 31 C 0.10 1.11 6.25 86.43 0.54 1.65 16 32 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.11 0.50 8.12 -2.39 -0.02 0.48 16 36 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.07 3.14 6.09 -2.39 -0.01 3.12 16 41 H 0.00 0.09 6.71 -2.38 -0.02 0.08 16 42 H 0.01 0.39 7.45 -2.39 -0.02 0.37 16 43 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.04 1.51 7.78 -2.39 -0.02 1.49 16 45 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.03 1.61 7.47 -2.39 -0.02 1.59 16 47 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 48 H 0.20 4.85 8.06 -2.91 -0.02 4.82 16 49 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.11 0.83 8.12 -2.39 -0.02 0.81 16 Total: -1.00 -85.05 388.06 2.64 -82.41 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.93 Total: 13.01 kcal Atomic # 6 Polarization: 27.30 SS G_CDS: 7.69 Total: 34.98 kcal Atomic # 7 Polarization: -144.92 SS G_CDS: -7.93 Total: -152.85 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.07 Total: -27.94 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.38 kcal Total: -85.05 2.64 -82.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048891292.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.888 kcal (2) G-P(sol) polarization free energy of solvation -85.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds