Wall clock time and date at job start Wed Apr 1 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46899 * 2 1 4 4 C 1.50701 * 109.47452 * 120.00417 * 2 1 3 5 5 O 1.21276 * 120.00338 * 25.05394 * 4 2 1 6 6 N 1.34778 * 119.99716 * 205.06141 * 4 2 1 7 7 C 1.46934 * 120.70240 * 355.75345 * 6 4 2 8 8 C 1.53190 * 108.91571 * 125.81145 * 7 6 4 9 9 C 1.53173 * 109.27501 * 55.23814 * 8 7 6 10 10 C 1.52238 * 109.62158 * 299.83660 * 9 8 7 11 11 C 1.54491 * 110.25229 * 297.03393 * 10 9 8 12 12 C 1.55029 * 101.52765 * 276.23744 * 11 10 9 13 13 N 1.47489 * 104.89655 * 323.64516 * 12 11 10 14 14 C 1.36941 * 125.65787 * 204.02168 * 13 12 11 15 15 H 1.07998 * 119.99684 * 162.62558 * 14 13 12 16 16 C 1.38811 * 120.00126 * 342.63528 * 14 13 12 17 17 N 1.31617 * 120.00006 * 159.35718 * 16 14 13 18 18 Si 1.86800 * 119.99871 * 339.35884 * 16 14 13 19 19 H 1.48502 * 109.47388 * 87.93896 * 18 16 14 20 20 H 1.48500 * 109.46916 * 207.93527 * 18 16 14 21 21 H 1.48498 * 109.47331 * 327.93577 * 18 16 14 22 22 C 1.47187 * 108.68000 * 24.00607 * 13 12 11 23 23 C 1.47080 * 120.69739 * 175.73439 * 6 4 2 24 24 C 1.50697 * 109.46947 * 240.00361 * 2 1 3 25 25 C 1.38603 * 120.80033 * 299.71867 * 24 2 1 26 26 N 1.32337 * 119.10246 * 179.71907 * 25 24 2 27 27 C 1.31795 * 120.82056 * 0.56799 * 26 25 24 28 28 N 1.31793 * 121.75370 * 359.70797 * 27 26 25 29 29 C 1.32335 * 120.82102 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47187 * 64.04695 * 1 2 3 31 31 H 1.09000 * 109.46983 * 184.04846 * 1 2 3 32 32 H 1.09000 * 109.47157 * 304.04155 * 1 2 3 33 33 H 1.09004 * 109.56328 * 5.98275 * 7 6 4 34 34 H 1.08997 * 109.56432 * 245.64184 * 7 6 4 35 35 H 1.09002 * 109.50541 * 295.29858 * 8 7 6 36 36 H 1.09004 * 109.53993 * 175.19554 * 8 7 6 37 37 H 1.08995 * 109.43573 * 59.87547 * 9 8 7 38 38 H 1.08994 * 109.43881 * 179.80118 * 9 8 7 39 39 H 1.09000 * 111.01827 * 34.29862 * 11 10 9 40 40 H 1.09007 * 111.01855 * 158.18031 * 11 10 9 41 41 H 1.09000 * 110.35789 * 204.78865 * 12 11 10 42 42 H 1.09002 * 110.44220 * 82.53906 * 12 11 10 43 43 H 0.97004 * 120.00152 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.90977 * 239.12863 * 22 13 12 45 45 H 1.09001 * 109.91249 * 117.85796 * 22 13 12 46 46 H 1.08998 * 109.57806 * 352.27390 * 23 6 4 47 47 H 1.09007 * 109.57473 * 112.66052 * 23 6 4 48 48 H 1.07994 * 120.44789 * 359.97438 * 25 24 2 49 49 H 1.08000 * 119.12696 * 179.68313 * 27 26 25 50 50 H 1.08001 * 120.45576 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.3376 -1.5402 1.7778 6 7 3.2539 -0.4237 1.7225 7 6 4.1454 0.5097 1.0205 8 6 4.5790 1.6098 1.9944 9 6 5.2113 0.9681 3.2331 10 6 4.1951 0.0624 3.9147 11 6 2.9903 0.8908 4.4137 12 6 3.5143 1.4092 5.7775 13 7 4.3216 0.3004 6.3199 14 6 4.5984 0.0878 7.6440 15 1 4.9491 -0.8790 7.9739 16 6 4.4280 1.1146 8.5623 17 7 4.2922 0.8375 9.8418 18 14 4.3913 2.8899 7.9822 19 1 3.0013 3.2624 7.6159 20 1 4.8705 3.7769 9.0725 21 1 5.2731 3.0417 6.7970 22 6 4.7800 -0.5398 5.2017 23 6 3.7225 -1.0383 2.9739 24 6 2.0323 -0.7103 -1.2305 25 6 1.7124 -2.0387 -1.4634 26 7 2.1669 -2.6278 -2.5578 27 6 2.9234 -1.9707 -3.4139 28 7 3.2524 -0.7090 -3.2224 29 6 2.8297 -0.0526 -2.1539 30 1 -0.3633 0.4497 -0.9240 31 1 -0.3633 -1.0251 0.0726 32 1 -0.3633 0.5753 0.8515 33 1 3.6166 0.9557 0.1780 34 1 5.0237 -0.0256 0.6601 35 1 3.7094 2.1960 2.2919 36 1 5.3073 2.2598 1.5094 37 1 6.0786 0.3797 2.9340 38 1 5.5240 1.7487 3.9264 39 1 2.7774 1.7181 3.7367 40 1 2.1108 0.2606 4.5469 41 1 2.6810 1.6327 6.4437 42 1 4.1336 2.2949 5.6356 43 1 4.1735 1.5551 10.4836 44 1 4.4188 -1.5601 5.3316 45 1 5.8689 -0.5321 5.1536 46 1 2.9052 -1.5900 3.4383 47 1 4.5488 -1.7165 2.7607 48 1 1.0970 -2.5843 -0.7635 49 1 3.2837 -2.4799 -4.2956 50 1 3.1032 0.9812 -2.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054183766.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:34 Heat of formation + Delta-G solvation = 44.724230 kcal Electronic energy + Delta-G solvation = -31496.984396 eV Core-core repulsion = 27525.107144 eV Total energy + Delta-G solvation = -3971.877251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.72559 -40.60583 -38.89413 -36.23139 -35.22897 -34.13089 -33.07984 -32.07838 -30.87863 -30.46037 -29.02241 -26.61694 -26.00927 -25.29097 -24.85719 -23.65198 -22.75611 -22.44618 -20.67996 -19.30533 -18.49127 -18.25361 -18.08391 -17.12012 -16.80920 -16.20820 -15.88431 -15.47257 -15.23180 -15.08603 -14.41171 -14.27020 -14.13780 -14.02604 -13.94603 -13.76337 -13.32215 -13.20314 -13.05494 -12.92310 -12.77080 -12.48263 -12.11832 -11.99202 -11.79819 -11.56940 -11.32585 -11.24953 -11.19937 -11.14000 -11.00724 -10.75281 -10.42343 -10.39504 -10.20610 -9.96271 -9.87373 -9.69527 -9.51428 -9.40267 -8.73921 -8.70165 -7.03033 -5.92698 -3.23336 0.38157 0.62886 2.36457 2.75050 3.32401 3.33476 3.44497 3.47683 3.70280 3.77722 4.09068 4.11960 4.15425 4.32549 4.47578 4.54336 4.74414 4.78179 4.81066 4.82477 4.87840 4.96529 5.02028 5.13853 5.24275 5.31087 5.36747 5.40223 5.44165 5.51262 5.58328 5.66858 5.67971 5.72283 5.84709 5.87739 5.92318 5.92523 6.02556 6.17026 6.25381 6.32152 6.42041 6.49143 6.52976 6.64222 6.74329 6.77867 7.21359 7.62345 7.71036 7.95463 8.32483 8.84320 9.69980 10.18789 11.23681 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.002744 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.515879 B =10202.643758 C =10365.215174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 H 0.106 0.894 4 C 0.521 3.479 5 O -0.531 6.531 6 N -0.603 5.603 7 C 0.106 3.894 8 C -0.138 4.138 9 C -0.103 4.103 10 C -0.085 4.085 11 C -0.117 4.117 12 C 0.107 3.893 13 N -0.608 5.608 14 C -0.239 4.239 15 H 0.092 0.908 16 C 0.019 3.981 17 N -0.912 5.912 18 Si 0.887 3.113 19 H -0.288 1.288 20 H -0.304 1.304 21 H -0.274 1.274 22 C 0.150 3.850 23 C 0.130 3.870 24 C -0.182 4.182 25 C 0.164 3.836 26 N -0.515 5.515 27 C 0.290 3.710 28 N -0.517 5.517 29 C 0.154 3.846 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.029 0.971 43 H 0.262 0.738 44 H 0.035 0.965 45 H 0.033 0.967 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.171 0.829 49 H 0.197 0.803 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 0.681 -27.671 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.086 4.086 3 H 0.124 0.876 4 C 0.308 3.692 5 O -0.407 6.407 6 N -0.335 5.335 7 C -0.017 4.017 8 C -0.176 4.176 9 C -0.141 4.141 10 C -0.086 4.086 11 C -0.155 4.155 12 C -0.018 4.018 13 N -0.335 5.335 14 C -0.366 4.366 15 H 0.110 0.890 16 C -0.179 4.179 17 N -0.556 5.556 18 Si 0.718 3.282 19 H -0.215 1.215 20 H -0.232 1.232 21 H -0.200 1.200 22 C 0.024 3.976 23 C 0.008 3.992 24 C -0.186 4.186 25 C -0.002 4.002 26 N -0.228 5.228 27 C 0.002 3.998 28 N -0.230 5.230 29 C -0.012 4.012 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.115 0.885 47 H 0.085 0.915 48 H 0.188 0.812 49 H 0.214 0.786 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.187 -0.230 -27.941 28.123 hybrid contribution -0.103 1.654 0.608 1.766 sum -3.291 1.425 -27.332 27.567 Atomic orbital electron populations 1.21697 0.90887 1.04006 1.02540 1.20225 0.98741 0.99858 0.89738 0.87590 1.20279 0.80950 0.82855 0.85121 1.90721 1.55923 1.33471 1.60603 1.48129 1.15367 1.45171 1.24835 1.21818 0.93999 0.91010 0.94854 1.22030 1.01567 0.97447 0.96564 1.21384 0.97287 0.99235 0.96168 1.21354 0.96410 0.95619 0.95213 1.22758 0.96788 0.98946 0.97055 1.22047 0.94581 0.91906 0.93266 1.44781 1.57756 1.28532 1.02388 1.18660 1.40932 0.97660 0.79323 0.89006 1.24963 1.00381 0.97724 0.94853 1.69826 1.52466 1.32086 1.01238 0.86962 0.77695 0.86765 0.76827 1.21519 1.23235 1.19981 1.21201 0.96575 0.94460 0.85370 1.21556 1.00166 0.94566 0.82944 1.21321 1.01618 0.97244 0.98458 1.23269 0.92880 0.91205 0.92804 1.68515 1.11149 1.39442 1.03705 1.25066 0.89979 0.87492 0.97218 1.68466 1.22859 1.10384 1.21252 1.23180 0.89926 1.00063 0.87993 0.91709 0.90910 0.91143 0.90304 0.91227 0.90924 0.90637 0.91744 0.90810 0.91745 0.91293 0.92615 0.95400 0.92770 0.94722 0.94859 0.88513 0.91524 0.81175 0.78635 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 8.58 37.16 0.32 -0.68 16 2 C -0.06 -0.48 2.12 -92.93 -0.20 -0.68 16 3 H 0.11 0.58 6.26 -51.93 -0.33 0.26 16 4 C 0.52 5.91 6.46 -10.98 -0.07 5.84 16 5 O -0.53 -7.93 15.45 5.56 0.09 -7.84 16 6 N -0.60 -6.57 2.82 -173.17 -0.49 -7.06 16 7 C 0.11 0.85 6.21 -3.71 -0.02 0.83 16 8 C -0.14 -1.26 5.90 -26.54 -0.16 -1.41 16 9 C -0.10 -1.29 4.55 -27.03 -0.12 -1.42 16 10 C -0.08 -1.26 0.55 -154.13 -0.09 -1.34 16 11 C -0.12 -1.94 5.73 -24.88 -0.14 -2.08 16 12 C 0.11 2.29 4.38 -2.43 -0.01 2.28 16 13 N -0.61 -14.54 3.23 -170.22 -0.55 -15.09 16 14 C -0.24 -6.79 10.60 -15.06 -0.16 -6.95 16 15 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 16 C 0.02 0.55 5.45 -17.43 -0.10 0.46 16 17 N -0.91 -28.38 13.97 55.49 0.78 -27.61 16 18 Si 0.89 22.62 24.28 -169.99 -4.13 18.49 16 19 H -0.29 -7.14 6.62 56.52 0.37 -6.76 16 20 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 21 H -0.27 -6.74 6.22 56.52 0.35 -6.39 16 22 C 0.15 2.86 6.43 -3.33 -0.02 2.84 16 23 C 0.13 1.71 4.96 -4.08 -0.02 1.69 16 24 C -0.18 -1.41 4.58 -104.35 -0.48 -1.89 16 25 C 0.16 1.53 10.20 -17.20 -0.18 1.35 16 26 N -0.52 -5.04 10.44 -14.58 -0.15 -5.19 16 27 C 0.29 2.39 12.29 -92.15 -1.13 1.26 16 28 N -0.52 -4.36 10.44 -14.58 -0.15 -4.52 16 29 C 0.15 1.07 10.27 -17.20 -0.18 0.90 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.63 7.23 -51.93 -0.38 0.25 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.44 4.31 -51.93 -0.22 0.22 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.70 6.22 -51.93 -0.32 0.38 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.10 7.49 -51.93 -0.39 0.71 16 39 H 0.06 0.92 6.00 -51.93 -0.31 0.61 16 40 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 41 H 0.06 1.31 6.47 -51.93 -0.34 0.97 16 42 H 0.03 0.62 4.98 -51.93 -0.26 0.36 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.03 0.67 7.80 -51.93 -0.40 0.26 16 45 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 46 H 0.10 1.49 6.90 -51.93 -0.36 1.13 16 47 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 48 H 0.17 1.59 7.74 -52.49 -0.41 1.18 16 49 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 50 H 0.17 0.67 7.63 -52.49 -0.40 0.26 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -34.55 377.86 -9.19 -43.74 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.52 Total: -1.62 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.75 Total: 0.99 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.57 Total: -59.46 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.13 Total: 18.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.55 -9.19 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054183766.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.465 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds