Wall clock time and date at job start Wed Apr 1 2020 03:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46899 * 2 1 4 4 C 1.50701 * 109.47452 * 120.00417 * 2 1 3 5 5 O 1.21276 * 120.00338 * 25.05394 * 4 2 1 6 6 N 1.34778 * 119.99716 * 205.06141 * 4 2 1 7 7 C 1.46934 * 120.70240 * 355.75345 * 6 4 2 8 8 C 1.53190 * 108.91571 * 125.81145 * 7 6 4 9 9 C 1.53173 * 109.27501 * 55.23814 * 8 7 6 10 10 C 1.52238 * 109.62158 * 299.83660 * 9 8 7 11 11 C 1.54491 * 110.25229 * 297.03393 * 10 9 8 12 12 C 1.55029 * 101.52765 * 276.23744 * 11 10 9 13 13 N 1.47489 * 104.89655 * 323.64516 * 12 11 10 14 14 C 1.36941 * 125.65787 * 204.02168 * 13 12 11 15 15 H 1.07998 * 119.99684 * 162.62558 * 14 13 12 16 16 C 1.38811 * 120.00126 * 342.63528 * 14 13 12 17 17 N 1.31617 * 120.00006 * 159.35718 * 16 14 13 18 18 Si 1.86800 * 119.99871 * 339.35884 * 16 14 13 19 19 H 1.48502 * 109.47388 * 87.93896 * 18 16 14 20 20 H 1.48500 * 109.46916 * 207.93527 * 18 16 14 21 21 H 1.48498 * 109.47331 * 327.93577 * 18 16 14 22 22 C 1.47187 * 108.68000 * 24.00607 * 13 12 11 23 23 C 1.47080 * 120.69739 * 175.73439 * 6 4 2 24 24 C 1.50697 * 109.46947 * 240.00361 * 2 1 3 25 25 C 1.38603 * 120.80033 * 299.71867 * 24 2 1 26 26 N 1.32337 * 119.10246 * 179.71907 * 25 24 2 27 27 C 1.31795 * 120.82056 * 0.56799 * 26 25 24 28 28 N 1.31793 * 121.75370 * 359.70797 * 27 26 25 29 29 C 1.32335 * 120.82102 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47187 * 64.04695 * 1 2 3 31 31 H 1.09000 * 109.46983 * 184.04846 * 1 2 3 32 32 H 1.09000 * 109.47157 * 304.04155 * 1 2 3 33 33 H 1.09004 * 109.56328 * 5.98275 * 7 6 4 34 34 H 1.08997 * 109.56432 * 245.64184 * 7 6 4 35 35 H 1.09002 * 109.50541 * 295.29858 * 8 7 6 36 36 H 1.09004 * 109.53993 * 175.19554 * 8 7 6 37 37 H 1.08995 * 109.43573 * 59.87547 * 9 8 7 38 38 H 1.08994 * 109.43881 * 179.80118 * 9 8 7 39 39 H 1.09000 * 111.01827 * 34.29862 * 11 10 9 40 40 H 1.09007 * 111.01855 * 158.18031 * 11 10 9 41 41 H 1.09000 * 110.35789 * 204.78865 * 12 11 10 42 42 H 1.09002 * 110.44220 * 82.53906 * 12 11 10 43 43 H 0.97004 * 120.00152 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.90977 * 239.12863 * 22 13 12 45 45 H 1.09001 * 109.91249 * 117.85796 * 22 13 12 46 46 H 1.08998 * 109.57806 * 352.27390 * 23 6 4 47 47 H 1.09007 * 109.57473 * 112.66052 * 23 6 4 48 48 H 1.07994 * 120.44789 * 359.97438 * 25 24 2 49 49 H 1.08000 * 119.12696 * 179.68313 * 27 26 25 50 50 H 1.08001 * 120.45576 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.3376 -1.5402 1.7778 6 7 3.2539 -0.4237 1.7225 7 6 4.1454 0.5097 1.0205 8 6 4.5790 1.6098 1.9944 9 6 5.2113 0.9681 3.2331 10 6 4.1951 0.0624 3.9147 11 6 2.9903 0.8908 4.4137 12 6 3.5143 1.4092 5.7775 13 7 4.3216 0.3004 6.3199 14 6 4.5984 0.0878 7.6440 15 1 4.9491 -0.8790 7.9739 16 6 4.4280 1.1146 8.5623 17 7 4.2922 0.8375 9.8418 18 14 4.3913 2.8899 7.9822 19 1 3.0013 3.2624 7.6159 20 1 4.8705 3.7769 9.0725 21 1 5.2731 3.0417 6.7970 22 6 4.7800 -0.5398 5.2017 23 6 3.7225 -1.0383 2.9739 24 6 2.0323 -0.7103 -1.2305 25 6 1.7124 -2.0387 -1.4634 26 7 2.1669 -2.6278 -2.5578 27 6 2.9234 -1.9707 -3.4139 28 7 3.2524 -0.7090 -3.2224 29 6 2.8297 -0.0526 -2.1539 30 1 -0.3633 0.4497 -0.9240 31 1 -0.3633 -1.0251 0.0726 32 1 -0.3633 0.5753 0.8515 33 1 3.6166 0.9557 0.1780 34 1 5.0237 -0.0256 0.6601 35 1 3.7094 2.1960 2.2919 36 1 5.3073 2.2598 1.5094 37 1 6.0786 0.3797 2.9340 38 1 5.5240 1.7487 3.9264 39 1 2.7774 1.7181 3.7367 40 1 2.1108 0.2606 4.5469 41 1 2.6810 1.6327 6.4437 42 1 4.1336 2.2949 5.6356 43 1 4.1735 1.5551 10.4836 44 1 4.4188 -1.5601 5.3316 45 1 5.8689 -0.5321 5.1536 46 1 2.9052 -1.5900 3.4383 47 1 4.5488 -1.7165 2.7607 48 1 1.0970 -2.5843 -0.7635 49 1 3.2837 -2.4799 -4.2956 50 1 3.1032 0.9812 -2.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054183766.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:33 Heat of formation + Delta-G solvation = 21.884480 kcal Electronic energy + Delta-G solvation = -31497.974801 eV Core-core repulsion = 27525.107144 eV Total energy + Delta-G solvation = -3972.867657 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.38114 -41.53702 -40.04262 -37.47897 -35.94457 -34.78771 -34.67428 -33.29538 -32.32936 -31.10901 -30.61397 -27.97524 -26.95347 -26.06800 -25.46669 -25.15253 -23.63237 -23.48127 -22.29180 -20.29419 -19.61938 -18.93740 -18.71659 -18.59123 -17.83900 -17.28181 -17.08069 -16.70180 -16.62417 -15.74102 -15.60115 -15.42895 -15.09970 -15.01029 -14.71373 -14.63033 -14.58269 -14.45298 -14.14817 -13.96518 -13.71447 -13.62549 -13.42777 -13.17750 -13.02177 -12.90237 -12.60622 -12.53041 -12.26587 -12.04923 -11.90378 -11.84784 -11.75246 -11.71909 -11.45324 -11.32521 -11.25570 -11.04808 -10.87546 -10.33338 -10.18752 -9.63126 -9.07256 -8.19252 -5.46570 -0.19364 0.05701 1.27886 1.35525 1.45133 1.53463 1.92086 2.39557 2.73909 3.02246 3.19964 3.23563 3.28674 3.41944 3.51843 3.55670 3.60851 3.72909 3.76017 3.79692 4.06992 4.08827 4.18200 4.21253 4.33168 4.35603 4.40887 4.51545 4.54930 4.63164 4.72286 4.76250 4.76466 4.81215 4.85254 4.85536 4.90275 4.93984 4.96760 5.13978 5.14834 5.19505 5.27784 5.37596 5.44548 5.47756 5.50404 5.63927 5.92615 6.07854 6.40069 6.73694 7.05284 7.11787 7.51649 8.08301 9.00882 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.002744 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.515879 B =10202.643758 C =10365.215174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 H 0.143 0.857 4 C 0.515 3.485 5 O -0.576 6.576 6 N -0.602 5.602 7 C 0.103 3.897 8 C -0.130 4.130 9 C -0.103 4.103 10 C -0.069 4.069 11 C -0.103 4.103 12 C 0.102 3.898 13 N -0.627 5.627 14 C -0.234 4.234 15 H 0.056 0.944 16 C -0.044 4.044 17 N -0.962 5.962 18 Si 0.954 3.046 19 H -0.276 1.276 20 H -0.309 1.309 21 H -0.255 1.255 22 C 0.143 3.857 23 C 0.138 3.862 24 C -0.179 4.179 25 C 0.148 3.852 26 N -0.541 5.541 27 C 0.285 3.715 28 N -0.528 5.528 29 C 0.164 3.836 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.262 0.738 44 H 0.024 0.976 45 H 0.037 0.963 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.157 0.843 49 H 0.219 0.781 50 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.489 3.680 -32.132 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 H 0.161 0.839 4 C 0.304 3.696 5 O -0.456 6.456 6 N -0.333 5.333 7 C -0.019 4.019 8 C -0.168 4.168 9 C -0.141 4.141 10 C -0.070 4.070 11 C -0.141 4.141 12 C -0.023 4.023 13 N -0.354 5.354 14 C -0.363 4.363 15 H 0.073 0.927 16 C -0.237 4.237 17 N -0.609 5.609 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.238 1.238 21 H -0.180 1.180 22 C 0.018 3.982 23 C 0.014 3.986 24 C -0.183 4.183 25 C -0.017 4.017 26 N -0.255 5.255 27 C -0.002 4.002 28 N -0.241 5.241 29 C -0.002 4.002 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.174 0.826 49 H 0.235 0.765 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.500 2.774 -32.470 32.684 hybrid contribution -0.310 0.551 2.006 2.103 sum -2.810 3.325 -30.464 30.774 Atomic orbital electron populations 1.21697 0.91038 1.02935 1.03449 1.20219 0.98570 1.00973 0.87504 0.83929 1.20994 0.80488 0.82310 0.85795 1.90712 1.57191 1.35491 1.62178 1.48211 1.15791 1.45464 1.23855 1.22110 0.94304 0.90257 0.95196 1.22020 1.02088 0.97733 0.94967 1.21392 0.97112 0.98308 0.97267 1.21235 0.96118 0.96062 0.93577 1.22674 0.96638 0.99869 0.94931 1.22144 0.93498 0.91492 0.95139 1.44888 1.58628 1.29957 1.01899 1.18596 1.39552 0.96322 0.81837 0.92665 1.25680 1.01004 1.02177 0.94876 1.69970 1.54923 1.33300 1.02689 0.85877 0.78504 0.80775 0.76618 1.20203 1.23803 1.17998 1.21406 0.96949 0.93624 0.86265 1.21229 0.99428 0.93981 0.83942 1.21253 1.01937 0.96430 0.98718 1.23232 0.93335 0.92318 0.92839 1.68507 1.12223 1.40373 1.04348 1.25550 0.89335 0.87808 0.97488 1.68567 1.23243 1.10359 1.21901 1.23783 0.88329 1.01351 0.86741 0.89546 0.92936 0.91550 0.86878 0.90060 0.90893 0.87499 0.90482 0.92889 0.88254 0.92814 0.95162 0.94749 0.92914 0.95828 0.94514 0.91442 0.90520 0.82572 0.76490 0.77552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.58 71.98 0.62 -1.09 16 2 C -0.05 -0.59 2.12 -12.29 -0.03 -0.62 16 3 H 0.14 0.63 6.26 -2.39 -0.01 0.62 16 4 C 0.52 10.59 6.46 87.66 0.57 11.15 16 5 O -0.58 -17.27 15.45 -3.02 -0.05 -17.31 16 6 N -0.60 -11.24 2.82 -820.17 -2.32 -13.56 16 7 C 0.10 1.07 6.21 86.36 0.54 1.60 16 8 C -0.13 -1.61 5.90 30.72 0.18 -1.43 16 9 C -0.10 -2.21 4.55 30.40 0.14 -2.07 16 10 C -0.07 -1.92 0.55 -51.93 -0.03 -1.95 16 11 C -0.10 -3.24 5.73 31.80 0.18 -3.06 16 12 C 0.10 4.27 4.38 86.88 0.38 4.65 16 13 N -0.63 -30.52 3.23 -692.47 -2.24 -32.76 16 14 C -0.23 -13.90 10.60 84.03 0.89 -13.01 16 15 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 16 C -0.04 -2.63 5.45 84.86 0.46 -2.17 16 17 N -0.96 -62.34 13.97 21.65 0.30 -62.04 16 18 Si 0.95 47.34 24.28 68.60 1.67 49.01 16 19 H -0.28 -13.03 6.62 99.48 0.66 -12.37 16 20 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 21 H -0.26 -11.75 6.22 99.48 0.62 -11.14 16 22 C 0.14 5.49 6.43 86.47 0.56 6.05 16 23 C 0.14 3.45 4.96 86.04 0.43 3.88 16 24 C -0.18 -2.17 4.58 -19.69 -0.09 -2.26 16 25 C 0.15 2.58 10.20 84.70 0.86 3.44 16 26 N -0.54 -9.94 10.44 -200.04 -2.09 -12.03 16 27 C 0.29 4.04 12.29 180.88 2.22 6.26 16 28 N -0.53 -6.94 10.44 -200.04 -2.09 -9.03 16 29 C 0.16 1.48 10.27 84.71 0.87 2.35 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.89 7.23 -2.39 -0.02 0.87 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.43 4.31 -2.39 -0.01 0.42 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.95 6.22 -2.39 -0.01 0.93 16 36 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.39 7.49 -2.39 -0.02 1.37 16 39 H 0.10 2.46 6.00 -2.39 -0.01 2.44 16 40 H 0.05 1.86 7.91 -2.38 -0.02 1.84 16 41 H 0.03 1.42 6.47 -2.39 -0.02 1.40 16 42 H 0.04 1.43 4.98 -2.39 -0.01 1.42 16 43 H 0.26 16.08 8.31 -92.70 -0.77 15.31 16 44 H 0.02 0.95 7.80 -2.38 -0.02 0.93 16 45 H 0.04 1.39 7.83 -2.39 -0.02 1.37 16 46 H 0.07 2.12 6.90 -2.39 -0.02 2.10 16 47 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.16 3.04 7.74 -2.91 -0.02 3.01 16 49 H 0.22 1.76 8.06 -2.91 -0.02 1.74 16 50 H 0.21 0.13 7.63 -2.91 -0.02 0.11 16 Total: -1.00 -81.30 377.86 2.75 -78.54 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.82 Total: 7.44 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 8.75 Total: 11.75 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -8.43 Total: -129.42 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.05 Total: -17.31 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.67 Total: 49.01 kcal Total: -81.30 2.75 -78.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054183766.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.426 kcal (2) G-P(sol) polarization free energy of solvation -81.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds