Wall clock time and date at job start Wed Apr 1 2020 02:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 115.56059 * 2 1 4 4 C 1.52996 * 117.50228 * 214.31090 * 2 1 3 5 5 C 1.53000 * 60.00251 * 252.51050 * 4 2 1 6 6 H 1.08997 * 117.50167 * 107.50680 * 5 4 2 7 7 C 1.50692 * 117.49960 * 252.51389 * 5 4 2 8 8 O 1.21278 * 120.00706 * 68.60385 * 7 5 4 9 9 N 1.34783 * 119.99576 * 248.60593 * 7 5 4 10 10 C 1.46929 * 120.62687 * 180.02562 * 9 7 5 11 11 C 1.53196 * 108.77486 * 126.36877 * 10 9 7 12 12 C 1.53037 * 109.31315 * 54.63188 * 11 10 9 13 13 N 1.46498 * 109.45940 * 178.61404 * 12 11 10 14 14 N 1.40021 * 126.05043 * 60.02434 * 13 12 11 15 15 C 1.30766 * 108.21133 * 179.97438 * 14 13 12 16 16 C 1.40141 * 108.19730 * 0.02562 * 15 14 13 17 17 C 1.35002 * 107.90384 * 359.73215 * 16 15 14 18 18 C 1.50761 * 109.36406 * 179.72808 * 17 16 15 19 19 N 1.46741 * 107.49107 * 0.41423 * 18 17 16 20 20 C 1.36934 * 126.84423 * 179.74036 * 19 18 17 21 21 H 1.08009 * 119.99738 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00729 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99543 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00505 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46855 * 60.00157 * 24 22 20 26 26 H 1.48496 * 109.47244 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46998 * 300.00351 * 24 22 20 28 28 C 1.46750 * 106.32211 * 359.76915 * 19 18 17 29 29 C 1.53043 * 109.53875 * 298.63222 * 12 11 10 30 30 C 1.46918 * 120.63391 * 359.97153 * 9 7 5 31 31 H 1.08996 * 109.47435 * 274.31208 * 1 2 3 32 32 H 1.08997 * 109.47181 * 34.31773 * 1 2 3 33 33 H 1.09001 * 109.46891 * 154.30970 * 1 2 3 34 34 H 1.09000 * 117.50264 * 145.02272 * 4 2 1 35 35 H 1.09000 * 117.51903 * 359.97438 * 4 2 1 36 36 H 1.08998 * 109.59209 * 6.57692 * 10 9 7 37 37 H 1.09003 * 109.58217 * 246.14973 * 10 9 7 38 38 H 1.08998 * 109.49640 * 174.58442 * 11 10 9 39 39 H 1.08996 * 109.49713 * 294.67755 * 11 10 9 40 40 H 1.09004 * 109.46115 * 58.65830 * 12 11 10 41 41 H 1.08004 * 125.90473 * 179.97438 * 15 14 13 42 42 H 1.09006 * 110.04333 * 240.82400 * 18 17 16 43 43 H 1.08993 * 109.65248 * 119.79198 * 18 17 16 44 44 H 0.96997 * 119.99911 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.83893 * 240.51195 * 28 19 18 46 46 H 1.08996 * 109.93798 * 119.53835 * 28 19 18 47 47 H 1.09003 * 109.49674 * 181.31610 * 29 12 11 48 48 H 1.08990 * 109.49664 * 301.41726 * 29 12 11 49 49 H 1.09008 * 109.58859 * 113.84030 * 30 9 7 50 50 H 1.09002 * 109.58786 * 353.42232 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 1.6115 -1.8587 1.2683 7 6 3.5292 -0.7810 1.4609 8 8 3.9718 0.3465 1.4011 9 7 4.1935 -1.7301 2.1497 10 6 5.4547 -1.4138 2.8338 11 6 5.3392 -1.8372 4.3016 12 6 4.9383 -3.3124 4.3727 13 7 4.8591 -3.7295 5.7748 14 7 4.0151 -3.1847 6.7502 15 6 4.2303 -3.8153 7.8754 16 6 5.2196 -4.7826 7.6527 17 6 5.5839 -4.7124 6.3546 18 6 6.6548 -5.7374 6.0798 19 7 6.9099 -6.4557 7.3337 20 6 7.8053 -7.4731 7.5297 21 1 8.4136 -7.8227 6.7086 22 6 7.9311 -8.0552 8.7835 23 7 7.1893 -7.6295 9.7841 24 14 9.1530 -9.4426 9.0509 25 1 10.5231 -8.9624 8.7393 26 1 9.0941 -9.8882 10.4662 27 1 8.8127 -10.5806 8.1596 28 6 6.0140 -5.8670 8.3359 29 6 3.5744 -3.5049 3.7057 30 6 3.6697 -3.1003 2.2317 31 1 -0.3634 0.0773 1.0247 32 1 -0.3633 0.8487 -0.5794 33 1 -0.3633 -0.9261 -0.4455 34 1 3.1716 -0.8751 -1.2682 35 1 1.6116 -1.8589 -1.2680 36 1 5.6427 -0.3417 2.7765 37 1 6.2732 -1.9562 2.3604 38 1 6.2997 -1.6969 4.7974 39 1 4.5815 -1.2300 4.7968 40 1 5.6839 -3.9167 3.8559 41 1 3.7324 -3.6233 8.8144 42 1 7.5668 -5.2440 5.7438 43 1 6.3075 -6.4351 5.3178 44 1 7.2770 -8.0365 10.6602 45 1 6.5995 -5.4397 9.1500 46 1 5.3401 -6.6298 8.7257 47 1 3.2789 -4.5517 3.7775 48 1 2.8334 -2.8820 4.2065 49 1 4.3423 -3.7806 1.7090 50 1 2.6799 -3.1410 1.7771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070342696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:03 Heat of formation + Delta-G solvation = 116.242851 kcal Electronic energy + Delta-G solvation = -30022.883922 eV Core-core repulsion = 26054.107951 eV Total energy + Delta-G solvation = -3968.775971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19936 -40.58300 -38.30914 -36.88636 -36.14606 -33.94629 -32.14223 -31.65097 -30.42301 -29.12749 -28.91432 -26.88110 -25.65608 -24.89171 -24.25135 -23.23769 -21.80207 -21.27248 -20.92520 -19.62101 -19.28373 -18.83577 -17.70333 -16.88655 -16.45772 -15.91677 -15.66865 -15.21983 -14.92624 -14.82464 -14.44006 -14.27239 -14.14908 -13.86001 -13.64270 -13.44806 -13.22988 -13.09183 -12.98254 -12.77441 -12.49585 -12.42907 -12.19688 -11.81497 -11.64081 -11.55413 -11.41817 -11.11895 -11.08814 -11.03269 -10.81998 -10.78018 -10.58287 -10.43999 -10.27846 -10.04098 -10.03853 -9.79408 -9.03094 -8.96571 -8.75472 -7.68000 -6.82100 -5.80254 -3.15613 2.16015 2.29452 2.55417 2.65733 3.37607 3.38380 3.39707 3.41353 3.43280 4.01871 4.22499 4.32431 4.35116 4.40095 4.49324 4.60869 4.63187 4.74113 4.84597 4.90839 4.92179 5.00622 5.15691 5.19749 5.26860 5.29212 5.34698 5.36345 5.42332 5.42733 5.48734 5.52997 5.57414 5.64358 5.66094 5.84350 5.86535 5.90501 6.01116 6.17402 6.20024 6.39287 6.41705 6.84901 7.03206 7.20494 7.41958 7.50103 7.55176 7.76642 7.86328 8.09012 8.21081 9.10905 9.69750 10.37587 11.32801 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.002057 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.077936 B =13610.119556 C =13925.255005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 H 0.117 0.883 4 C -0.147 4.147 5 C -0.195 4.195 6 H 0.126 0.874 7 C 0.548 3.452 8 O -0.542 6.542 9 N -0.609 5.609 10 C 0.115 3.885 11 C -0.140 4.140 12 C 0.171 3.829 13 N -0.356 5.356 14 N -0.299 5.299 15 C 0.068 3.932 16 C -0.253 4.253 17 C 0.036 3.964 18 C 0.219 3.781 19 N -0.595 5.595 20 C -0.230 4.230 21 H 0.083 0.917 22 C -0.003 4.003 23 N -0.917 5.917 24 Si 0.918 3.082 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.245 3.755 29 C -0.143 4.143 30 C 0.111 3.889 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.179 0.821 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.256 0.744 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 11.589 -19.078 24.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.216 4.216 6 H 0.143 0.857 7 C 0.336 3.664 8 O -0.419 6.419 9 N -0.342 5.342 10 C -0.008 4.008 11 C -0.179 4.179 12 C 0.068 3.932 13 N -0.139 5.139 14 N -0.120 5.120 15 C -0.117 4.117 16 C -0.264 4.264 17 C -0.090 4.090 18 C 0.091 3.909 19 N -0.323 5.323 20 C -0.358 4.358 21 H 0.101 0.899 22 C -0.201 4.201 23 N -0.563 5.563 24 Si 0.748 3.252 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.210 1.210 28 C 0.119 3.881 29 C -0.182 4.182 30 C -0.013 4.013 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.196 0.804 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.094 0.906 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.558 12.985 -19.618 26.212 hybrid contribution 1.025 -1.495 0.849 2.002 sum -10.533 11.490 -18.768 24.397 Atomic orbital electron populations 1.21408 0.92110 1.02286 1.02344 1.22392 0.95320 0.95061 1.01232 0.86509 1.23108 1.03176 1.01632 0.90562 1.22348 0.97830 1.05516 0.95856 0.85652 1.19662 0.84482 0.84155 0.78053 1.90685 1.68623 1.20838 1.61789 1.48069 1.24045 1.10434 1.51689 1.21616 0.85072 1.03128 0.90950 1.22269 1.03735 0.95321 0.96600 1.21134 0.98158 0.96268 0.77640 1.47909 1.30977 1.27093 1.07947 1.77221 1.15472 1.22442 0.96869 1.23176 0.97291 0.94451 0.96813 1.21926 1.03527 1.04472 0.96500 1.21795 0.98399 0.93883 0.94957 1.19097 0.90926 0.89216 0.91683 1.44010 1.44960 1.39627 1.03656 1.18868 1.13208 1.08133 0.95555 0.89900 1.24849 0.99691 0.99856 0.95661 1.69950 1.41595 1.43619 1.01117 0.86112 0.80536 0.81518 0.77036 1.21003 1.21466 1.21009 1.19032 0.89991 0.89107 0.89968 1.22288 0.97563 1.03357 0.94995 1.21795 1.00733 0.82366 0.96360 0.91845 0.91607 0.92285 0.88272 0.87673 0.88306 0.90900 0.89886 0.90000 0.88269 0.80436 0.94555 0.94643 0.93377 0.92796 0.92775 0.89789 0.89917 0.90565 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.19 37.16 0.38 -0.31 16 2 C -0.12 -0.91 5.92 -90.62 -0.54 -1.44 16 3 H 0.12 1.06 7.67 -51.93 -0.40 0.67 16 4 C -0.15 -0.94 9.88 -26.73 -0.26 -1.20 16 5 C -0.19 -1.53 4.85 -91.77 -0.44 -1.97 16 6 H 0.13 0.78 6.56 -51.93 -0.34 0.44 16 7 C 0.55 5.98 7.48 -10.99 -0.08 5.89 16 8 O -0.54 -7.83 15.67 5.56 0.09 -7.74 16 9 N -0.61 -5.82 2.97 -172.79 -0.51 -6.34 16 10 C 0.12 1.13 6.43 -3.71 -0.02 1.11 16 11 C -0.14 -1.59 5.62 -26.61 -0.15 -1.74 16 12 C 0.17 2.07 2.92 -67.89 -0.20 1.87 16 13 N -0.36 -5.88 3.28 -50.65 -0.17 -6.05 16 14 N -0.30 -5.27 12.42 30.67 0.38 -4.89 16 15 C 0.07 1.24 12.03 -17.29 -0.21 1.03 16 16 C -0.25 -5.33 6.98 -105.01 -0.73 -6.07 16 17 C 0.04 0.70 7.62 -82.24 -0.63 0.08 16 18 C 0.22 4.54 7.28 -5.03 -0.04 4.51 16 19 N -0.60 -15.19 3.42 -175.50 -0.60 -15.79 16 20 C -0.23 -6.24 10.34 -15.06 -0.16 -6.40 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.70 16 22 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 23 N -0.92 -26.36 10.49 55.49 0.58 -25.78 16 24 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 28 C 0.24 6.09 5.41 -5.01 -0.03 6.07 16 29 C -0.14 -1.43 5.62 -26.63 -0.15 -1.58 16 30 C 0.11 0.83 6.34 -3.74 -0.02 0.80 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.47 8.05 -51.93 -0.42 0.05 16 36 H 0.10 1.09 7.00 -51.93 -0.36 0.72 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.10 1.09 8.07 -51.93 -0.42 0.67 16 41 H 0.18 2.67 8.06 -52.48 -0.42 2.25 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.05 1.47 7.51 -51.93 -0.39 1.08 16 46 H 0.05 1.47 7.51 -51.93 -0.39 1.08 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 50 H 0.09 0.53 5.51 -51.93 -0.29 0.24 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -33.00 399.09 -10.65 -43.65 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.04 Total: 0.05 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -3.38 Total: 0.47 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.32 Total: -58.85 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.00 -10.65 -43.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070342696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.895 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds