Wall clock time and date at job start Wed Apr 1 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 115.56059 * 2 1 4 4 C 1.52996 * 117.50228 * 214.31090 * 2 1 3 5 5 C 1.53000 * 60.00251 * 252.51050 * 4 2 1 6 6 H 1.08997 * 117.50167 * 107.50680 * 5 4 2 7 7 C 1.50692 * 117.49960 * 252.51389 * 5 4 2 8 8 O 1.21278 * 120.00706 * 68.60385 * 7 5 4 9 9 N 1.34783 * 119.99576 * 248.60593 * 7 5 4 10 10 C 1.46929 * 120.62687 * 180.02562 * 9 7 5 11 11 C 1.53196 * 108.77486 * 126.36877 * 10 9 7 12 12 C 1.53037 * 109.31315 * 54.63188 * 11 10 9 13 13 N 1.46498 * 109.45940 * 178.61404 * 12 11 10 14 14 N 1.40021 * 126.05043 * 60.02434 * 13 12 11 15 15 C 1.30766 * 108.21133 * 179.97438 * 14 13 12 16 16 C 1.40141 * 108.19730 * 0.02562 * 15 14 13 17 17 C 1.35002 * 107.90384 * 359.73215 * 16 15 14 18 18 C 1.50761 * 109.36406 * 179.72808 * 17 16 15 19 19 N 1.46741 * 107.49107 * 0.41423 * 18 17 16 20 20 C 1.36934 * 126.84423 * 179.74036 * 19 18 17 21 21 H 1.08009 * 119.99738 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00729 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99543 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00505 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46855 * 60.00157 * 24 22 20 26 26 H 1.48496 * 109.47244 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46998 * 300.00351 * 24 22 20 28 28 C 1.46750 * 106.32211 * 359.76915 * 19 18 17 29 29 C 1.53043 * 109.53875 * 298.63222 * 12 11 10 30 30 C 1.46918 * 120.63391 * 359.97153 * 9 7 5 31 31 H 1.08996 * 109.47435 * 274.31208 * 1 2 3 32 32 H 1.08997 * 109.47181 * 34.31773 * 1 2 3 33 33 H 1.09001 * 109.46891 * 154.30970 * 1 2 3 34 34 H 1.09000 * 117.50264 * 145.02272 * 4 2 1 35 35 H 1.09000 * 117.51903 * 359.97438 * 4 2 1 36 36 H 1.08998 * 109.59209 * 6.57692 * 10 9 7 37 37 H 1.09003 * 109.58217 * 246.14973 * 10 9 7 38 38 H 1.08998 * 109.49640 * 174.58442 * 11 10 9 39 39 H 1.08996 * 109.49713 * 294.67755 * 11 10 9 40 40 H 1.09004 * 109.46115 * 58.65830 * 12 11 10 41 41 H 1.08004 * 125.90473 * 179.97438 * 15 14 13 42 42 H 1.09006 * 110.04333 * 240.82400 * 18 17 16 43 43 H 1.08993 * 109.65248 * 119.79198 * 18 17 16 44 44 H 0.96997 * 119.99911 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.83893 * 240.51195 * 28 19 18 46 46 H 1.08996 * 109.93798 * 119.53835 * 28 19 18 47 47 H 1.09003 * 109.49674 * 181.31610 * 29 12 11 48 48 H 1.08990 * 109.49664 * 301.41726 * 29 12 11 49 49 H 1.09008 * 109.58859 * 113.84030 * 30 9 7 50 50 H 1.09002 * 109.58786 * 353.42232 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 1.6115 -1.8587 1.2683 7 6 3.5292 -0.7810 1.4609 8 8 3.9718 0.3465 1.4011 9 7 4.1935 -1.7301 2.1497 10 6 5.4547 -1.4138 2.8338 11 6 5.3392 -1.8372 4.3016 12 6 4.9383 -3.3124 4.3727 13 7 4.8591 -3.7295 5.7748 14 7 4.0151 -3.1847 6.7502 15 6 4.2303 -3.8153 7.8754 16 6 5.2196 -4.7826 7.6527 17 6 5.5839 -4.7124 6.3546 18 6 6.6548 -5.7374 6.0798 19 7 6.9099 -6.4557 7.3337 20 6 7.8053 -7.4731 7.5297 21 1 8.4136 -7.8227 6.7086 22 6 7.9311 -8.0552 8.7835 23 7 7.1893 -7.6295 9.7841 24 14 9.1530 -9.4426 9.0509 25 1 10.5231 -8.9624 8.7393 26 1 9.0941 -9.8882 10.4662 27 1 8.8127 -10.5806 8.1596 28 6 6.0140 -5.8670 8.3359 29 6 3.5744 -3.5049 3.7057 30 6 3.6697 -3.1003 2.2317 31 1 -0.3634 0.0773 1.0247 32 1 -0.3633 0.8487 -0.5794 33 1 -0.3633 -0.9261 -0.4455 34 1 3.1716 -0.8751 -1.2682 35 1 1.6116 -1.8589 -1.2680 36 1 5.6427 -0.3417 2.7765 37 1 6.2732 -1.9562 2.3604 38 1 6.2997 -1.6969 4.7974 39 1 4.5815 -1.2300 4.7968 40 1 5.6839 -3.9167 3.8559 41 1 3.7324 -3.6233 8.8144 42 1 7.5668 -5.2440 5.7438 43 1 6.3075 -6.4351 5.3178 44 1 7.2770 -8.0365 10.6602 45 1 6.5995 -5.4397 9.1500 46 1 5.3401 -6.6298 8.7257 47 1 3.2789 -4.5517 3.7775 48 1 2.8334 -2.8820 4.2065 49 1 4.3423 -3.7806 1.7090 50 1 2.6799 -3.1410 1.7771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070342696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:02 Heat of formation + Delta-G solvation = 97.418167 kcal Electronic energy + Delta-G solvation = -30023.700222 eV Core-core repulsion = 26054.107951 eV Total energy + Delta-G solvation = -3969.592271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.60357 -41.44087 -39.15626 -37.96834 -37.52146 -35.00445 -34.09215 -32.46281 -31.65034 -30.75124 -29.61629 -28.48814 -26.99076 -26.36929 -25.07700 -24.03826 -23.21581 -22.51218 -21.69647 -20.79685 -20.63116 -19.75340 -18.84930 -18.45875 -17.46839 -17.18573 -16.70459 -16.66557 -16.41604 -15.65067 -15.40535 -15.33020 -15.26363 -15.01811 -14.97520 -14.59080 -14.37648 -14.12598 -14.01374 -13.63995 -13.46487 -13.36083 -13.20653 -13.17143 -12.88987 -12.79427 -12.67310 -12.58406 -12.40386 -12.32440 -12.15031 -12.01175 -11.88108 -11.82212 -11.55292 -11.33920 -10.99148 -10.90649 -10.82815 -10.18224 -9.82621 -9.39416 -8.76060 -7.87176 -5.26000 0.82282 1.27185 1.42927 1.51194 1.54898 1.61149 1.81424 1.85368 2.48584 2.82593 3.24521 3.35035 3.35759 3.40113 3.54896 3.60623 3.76649 3.78118 3.86846 3.87980 4.02871 4.09370 4.16709 4.19471 4.24281 4.42009 4.49174 4.49844 4.59704 4.64262 4.68330 4.75050 4.76082 4.81263 4.84284 4.87607 4.94525 4.97676 5.06016 5.14351 5.21607 5.24521 5.39127 5.42778 5.43405 5.43556 5.70620 5.74030 6.09548 6.10077 6.27840 6.69835 7.03897 7.06856 7.68120 8.36369 9.25359 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.002057 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.077936 B =13610.119556 C =13925.255005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.133 4.133 3 H 0.091 0.909 4 C -0.129 4.129 5 C -0.200 4.200 6 H 0.148 0.852 7 C 0.540 3.460 8 O -0.588 6.588 9 N -0.608 5.608 10 C 0.120 3.880 11 C -0.129 4.129 12 C 0.158 3.842 13 N -0.342 5.342 14 N -0.298 5.298 15 C 0.070 3.930 16 C -0.287 4.287 17 C 0.047 3.953 18 C 0.218 3.782 19 N -0.618 5.618 20 C -0.243 4.243 21 H 0.098 0.902 22 C -0.064 4.064 23 N -0.950 5.950 24 Si 0.988 3.012 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.272 1.272 28 C 0.263 3.737 29 C -0.134 4.134 30 C 0.115 3.885 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.120 0.880 41 H 0.203 0.797 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.250 0.750 45 H 0.014 0.986 46 H 0.017 0.983 47 H 0.089 0.911 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.792 10.716 -22.098 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.152 4.152 3 H 0.109 0.891 4 C -0.166 4.166 5 C -0.220 4.220 6 H 0.165 0.835 7 C 0.330 3.670 8 O -0.468 6.468 9 N -0.340 5.340 10 C -0.003 4.003 11 C -0.168 4.168 12 C 0.058 3.942 13 N -0.125 5.125 14 N -0.118 5.118 15 C -0.116 4.116 16 C -0.299 4.299 17 C -0.081 4.081 18 C 0.091 3.909 19 N -0.346 5.346 20 C -0.370 4.370 21 H 0.115 0.885 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.223 1.223 27 H -0.198 1.198 28 C 0.137 3.863 29 C -0.173 4.173 30 C -0.007 4.007 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.220 0.780 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.032 0.968 46 H 0.035 0.965 47 H 0.107 0.893 48 H 0.084 0.916 49 H 0.119 0.881 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.131 12.119 -22.695 28.445 hybrid contribution 1.199 -1.135 1.719 2.384 sum -10.932 10.983 -20.976 26.079 Atomic orbital electron populations 1.21396 0.90508 1.03405 1.02370 1.22408 0.96509 0.94185 1.02098 0.89090 1.23198 1.02899 1.01183 0.89368 1.22401 0.96530 1.06291 0.96785 0.83489 1.20256 0.85227 0.83603 0.77877 1.90665 1.69919 1.22733 1.63533 1.48179 1.23684 1.11206 1.50929 1.21543 0.86181 1.02552 0.90046 1.22131 1.02641 0.94512 0.97520 1.21645 1.00403 0.96794 0.75407 1.48267 1.29401 1.25578 1.09251 1.77225 1.15558 1.22177 0.96875 1.23516 0.96588 0.93423 0.98028 1.21667 1.05606 1.05444 0.97173 1.21609 0.97922 0.94039 0.94576 1.19193 0.91966 0.89634 0.90085 1.44277 1.44847 1.39893 1.05556 1.19356 1.13329 1.08304 0.96034 0.88453 1.25785 1.01777 1.02598 0.95566 1.70185 1.43384 1.44990 1.01245 0.85018 0.78432 0.78617 0.76411 1.19987 1.22282 1.19808 1.18508 0.89162 0.89062 0.89589 1.22220 0.95424 1.03374 0.96312 1.21977 1.02781 0.81257 0.94701 0.92253 0.91215 0.90566 0.89135 0.84866 0.89873 0.88612 0.90449 0.92150 0.86192 0.78030 0.92831 0.92508 0.94105 0.96765 0.96537 0.89277 0.91553 0.88135 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.19 71.98 0.73 -0.34 16 2 C -0.13 -1.80 5.92 -10.79 -0.06 -1.87 16 3 H 0.09 1.71 7.67 -2.38 -0.02 1.69 16 4 C -0.13 -1.29 9.88 30.59 0.30 -0.98 16 5 C -0.20 -2.65 4.85 -11.54 -0.06 -2.71 16 6 H 0.15 1.28 6.56 -2.39 -0.02 1.26 16 7 C 0.54 11.08 7.48 87.65 0.66 11.74 16 8 O -0.59 -17.15 15.67 -3.02 -0.05 -17.20 16 9 N -0.61 -10.23 2.97 -818.97 -2.43 -12.67 16 10 C 0.12 2.16 6.43 86.36 0.56 2.71 16 11 C -0.13 -2.75 5.62 30.67 0.17 -2.58 16 12 C 0.16 3.43 2.92 45.02 0.13 3.56 16 13 N -0.34 -10.73 3.28 -314.17 -1.03 -11.76 16 14 N -0.30 -10.15 12.42 -56.88 -0.71 -10.86 16 15 C 0.07 2.51 12.03 85.31 1.03 3.54 16 16 C -0.29 -12.26 6.98 -20.12 -0.14 -12.40 16 17 C 0.05 1.78 7.62 41.32 0.31 2.09 16 18 C 0.22 8.75 7.28 85.61 0.62 9.38 16 19 N -0.62 -31.92 3.42 -709.15 -2.42 -34.35 16 20 C -0.24 -13.18 10.34 84.03 0.87 -12.31 16 21 H 0.10 4.86 7.83 -2.91 -0.02 4.83 16 22 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 23 N -0.95 -56.85 10.49 21.65 0.23 -56.62 16 24 Si 0.99 44.34 29.55 68.60 2.03 46.37 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 C 0.26 13.71 5.41 85.61 0.46 14.18 16 29 C -0.13 -2.27 5.62 30.66 0.17 -2.10 16 30 C 0.12 1.27 6.34 86.35 0.55 1.81 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 0.43 7.90 -2.39 -0.02 0.41 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.13 0.60 8.05 -2.39 -0.02 0.58 16 36 H 0.08 1.81 7.00 -2.39 -0.02 1.80 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.12 2.17 8.07 -2.39 -0.02 2.15 16 41 H 0.20 5.98 8.06 -2.91 -0.02 5.95 16 42 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.01 0.84 7.51 -2.39 -0.02 0.82 16 46 H 0.02 0.96 7.51 -2.39 -0.02 0.94 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 50 H 0.12 0.79 5.51 -2.39 -0.01 0.77 16 Total: -1.00 -75.32 399.09 3.32 -72.00 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.93 Total: 14.45 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 6.77 Total: 10.63 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -6.37 Total: -126.26 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -75.32 3.32 -72.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070342696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.419 kcal (2) G-P(sol) polarization free energy of solvation -75.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds