Wall clock time and date at job start Wed Apr 1 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.57994 * 2 1 4 4 C 1.53264 * 109.68976 * 239.66492 * 2 1 3 5 5 C 1.53154 * 109.44199 * 189.91260 * 4 2 1 6 6 C 1.53378 * 109.22479 * 69.33665 * 5 4 2 7 7 C 1.51118 * 108.24556 * 311.14191 * 6 5 4 8 8 N 1.30554 * 127.09323 * 196.09943 * 7 6 5 9 9 C 1.33451 * 109.68198 * 179.62393 * 8 7 6 10 10 C 1.36835 * 107.83580 * 0.45779 * 9 8 7 11 11 C 1.46768 * 126.90979 * 179.85395 * 10 9 8 12 12 O 1.21683 * 119.99509 * 169.75850 * 11 10 9 13 13 N 1.34771 * 120.00282 * 349.75543 * 11 10 9 14 14 C 1.47391 * 135.85369 * 351.97341 * 13 11 10 15 15 C 1.52067 * 87.40998 * 154.38995 * 14 13 11 16 16 C 1.47391 * 135.85526 * 172.35261 * 13 11 10 17 17 C 1.53519 * 117.21564 * 267.27733 * 15 14 13 18 18 C 1.54626 * 102.70460 * 262.93522 * 17 15 14 19 19 N 1.47146 * 107.37751 * 339.38129 * 18 17 15 20 20 C 1.36942 * 125.57905 * 179.05256 * 19 18 17 21 21 H 1.07997 * 119.99852 * 180.02562 * 20 19 18 22 22 C 1.38807 * 119.99810 * 0.02636 * 20 19 18 23 23 N 1.31617 * 120.00245 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99760 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47310 * 59.99788 * 24 22 20 26 26 H 1.48503 * 109.47316 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47262 * 299.99887 * 24 22 20 28 28 C 1.47753 * 108.84224 * 359.09096 * 19 18 17 29 29 N 1.34872 * 123.91689 * 16.03034 * 7 6 5 30 30 H 1.08999 * 109.47446 * 333.59386 * 1 2 3 31 31 H 1.08999 * 109.47043 * 93.59670 * 1 2 3 32 32 H 1.09000 * 109.46842 * 213.59239 * 1 2 3 33 33 H 1.09000 * 109.47377 * 309.90523 * 4 2 1 34 34 H 1.08997 * 109.47741 * 69.92157 * 4 2 1 35 35 H 1.09004 * 109.51125 * 189.25698 * 5 4 2 36 36 H 1.09000 * 109.51308 * 309.35830 * 5 4 2 37 37 H 1.08997 * 109.71133 * 70.83167 * 6 5 4 38 38 H 1.09005 * 109.70840 * 191.41519 * 6 5 4 39 39 H 1.08002 * 126.08424 * 180.32755 * 9 8 7 40 40 H 1.09004 * 113.54798 * 269.00784 * 14 13 11 41 41 H 1.09006 * 113.54246 * 39.68120 * 14 13 11 42 42 H 1.09006 * 113.53809 * 320.31489 * 16 13 11 43 43 H 1.08997 * 113.54927 * 90.99983 * 16 13 11 44 44 H 1.09001 * 110.76048 * 21.23956 * 17 15 14 45 45 H 1.08997 * 110.75864 * 144.44233 * 17 15 14 46 46 H 1.08995 * 109.86690 * 98.83070 * 18 17 15 47 47 H 1.09000 * 109.86304 * 219.93526 * 18 17 15 48 48 H 0.96999 * 119.99802 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.40788 * 263.50147 * 28 19 18 50 50 H 1.08996 * 110.40753 * 141.07645 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7288 -1.2455 5 6 3.5576 -0.9437 -1.1204 6 6 3.8317 -1.9740 -0.0178 7 6 3.0411 -1.5773 1.2075 8 7 3.2130 -2.0064 2.4285 9 6 2.3282 -1.4222 3.2389 10 6 1.5526 -0.5879 2.4809 11 6 0.4477 0.2568 2.9499 12 8 -0.0386 1.0896 2.2080 13 7 -0.0281 0.1099 4.2022 14 6 0.1805 -0.8420 5.3081 15 6 -0.2348 0.2732 6.2548 16 6 -0.9887 0.8273 5.0596 17 6 0.8817 1.1484 6.8414 18 6 1.1283 0.5030 8.2248 19 7 -0.0736 -0.2733 8.5681 20 6 -0.2465 -1.0116 9.7084 21 1 -1.1694 -1.5490 9.8690 22 6 0.7645 -1.0693 10.6577 23 7 1.8891 -0.4140 10.4622 24 14 0.5290 -2.0771 12.2128 25 1 0.2950 -3.4982 11.8511 26 1 1.7458 -1.9748 13.0580 27 1 -0.6412 -1.5589 12.9661 28 6 -1.0632 -0.1265 7.4808 29 7 2.0207 -0.6954 1.1918 30 1 -0.3634 0.9204 0.4570 31 1 -0.3633 -0.0645 -1.0256 32 1 -0.3633 -0.8561 0.5686 33 1 1.5481 -1.6942 -1.3343 34 1 1.8367 -0.1287 -2.1308 35 1 3.9528 -1.3106 -2.0678 36 1 4.0398 0.0001 -0.8659 37 1 3.5191 -2.9629 -0.3527 38 1 4.8958 -1.9853 0.2185 39 1 2.2387 -1.5814 4.3034 40 1 -0.5127 -1.6831 5.2953 41 1 1.2191 -1.1513 5.4262 42 1 -0.9264 1.9119 4.9702 43 1 -2.0094 0.4537 4.9773 44 1 1.7789 1.0951 6.2246 45 1 0.5482 2.1807 6.9473 46 1 1.9943 -0.1572 8.1764 47 1 1.2936 1.2795 8.9716 48 1 2.5954 -0.4540 11.1258 49 1 -1.7826 0.6553 7.7246 50 1 -1.5745 -1.0723 7.3019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072759886.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:32 Heat of formation + Delta-G solvation = 103.243954 kcal Electronic energy + Delta-G solvation = -31089.786748 eV Core-core repulsion = 27120.447103 eV Total energy + Delta-G solvation = -3969.339646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.62744 -40.59167 -38.21004 -37.33694 -35.69427 -33.87009 -32.27094 -30.90674 -30.46375 -29.16182 -28.42182 -27.28424 -26.08007 -25.69569 -23.89681 -23.12318 -22.62931 -21.97215 -20.30697 -19.76894 -19.03445 -18.44371 -17.39080 -16.81674 -16.41601 -16.04893 -15.73314 -15.34156 -14.98455 -14.91745 -14.69146 -14.55918 -14.33142 -13.84508 -13.67744 -13.60419 -13.32017 -13.00332 -12.56204 -12.44861 -12.36725 -12.28456 -11.91243 -11.83302 -11.79230 -11.51971 -11.51398 -11.02673 -10.94237 -10.91729 -10.63748 -10.48727 -10.32942 -10.14388 -10.07659 -9.83037 -9.76104 -9.67263 -9.53908 -8.70270 -8.59634 -8.39263 -6.84391 -5.71150 -3.05065 1.27457 2.26319 2.75822 3.00866 3.34539 3.41347 3.45850 3.47084 3.97085 4.13018 4.20831 4.28602 4.40593 4.50107 4.63918 4.79514 4.85822 4.93286 4.94586 5.06518 5.17943 5.21232 5.27143 5.31691 5.37262 5.41305 5.49174 5.51442 5.56146 5.62825 5.64703 5.68458 5.71034 5.79424 5.82308 5.88622 6.07308 6.16338 6.21286 6.28133 6.45271 6.50071 6.53045 6.64720 6.69026 6.96795 7.55130 7.61338 7.75826 7.82479 7.85558 8.20465 8.24841 9.21367 9.81415 10.46633 11.40289 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.002606 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.377924 B =10741.884497 C =11656.743452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.135 3.865 3 H 0.093 0.907 4 C -0.132 4.132 5 C -0.128 4.128 6 C -0.035 4.035 7 C 0.224 3.776 8 N -0.491 5.491 9 C 0.036 3.964 10 C -0.075 4.075 11 C 0.619 3.381 12 O -0.549 6.549 13 N -0.632 5.632 14 C 0.116 3.884 15 C -0.105 4.105 16 C 0.127 3.873 17 C -0.117 4.117 18 C 0.179 3.821 19 N -0.604 5.604 20 C -0.229 4.229 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.154 3.846 29 N -0.419 5.419 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.184 0.816 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.253 0.747 49 H 0.027 0.973 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 0.179 -24.162 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.033 3.967 3 H 0.111 0.889 4 C -0.170 4.170 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.038 4.038 8 N -0.209 5.209 9 C -0.118 4.118 10 C -0.191 4.191 11 C 0.410 3.590 12 O -0.429 6.429 13 N -0.365 5.365 14 C -0.006 4.006 15 C -0.107 4.107 16 C 0.004 3.996 17 C -0.156 4.156 18 C 0.055 3.945 19 N -0.331 5.331 20 C -0.358 4.358 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.027 3.973 29 N -0.101 5.101 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.201 0.799 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.045 0.955 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.471 0.132 -24.478 24.483 hybrid contribution -0.663 -0.021 0.730 0.986 sum -0.191 0.111 -23.748 23.749 Atomic orbital electron populations 1.22553 0.92054 1.05967 1.02014 1.21654 0.96788 0.96250 0.82023 0.88879 1.22072 0.96319 1.01842 0.96741 1.21726 0.95839 0.99839 0.99182 1.20270 0.99508 0.99608 0.87950 1.23468 0.91513 0.92929 0.95880 1.69977 1.25167 1.26140 0.99655 1.23136 0.93340 0.95325 1.00013 1.20455 1.04405 1.08904 0.85383 1.16142 0.80816 0.82593 0.79401 1.90630 1.61727 1.38082 1.52482 1.49380 1.43635 1.31913 1.11605 1.23120 1.02694 0.93501 0.81325 1.22202 0.98402 0.96395 0.93683 1.22799 0.93257 0.98409 0.85094 1.22479 0.96008 0.97917 0.99158 1.21225 0.89855 0.94226 0.89206 1.44525 1.13138 1.56736 1.18671 1.18985 1.00412 1.22130 0.94240 0.90457 1.24790 0.96320 1.00388 0.98816 1.69943 1.05871 1.45570 1.35459 0.86212 0.76817 0.79835 0.82946 1.21159 1.21645 1.21226 1.21132 0.91858 0.98023 0.86274 1.45358 1.25349 1.32410 1.07011 0.87262 0.91912 0.92586 0.90539 0.89147 0.89739 0.90988 0.88984 0.88319 0.79944 0.89112 0.89700 0.90256 0.89585 0.92035 0.91776 0.93399 0.93790 0.93672 0.95531 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 7.99 37.16 0.30 -1.52 16 2 C 0.14 1.37 3.31 -67.82 -0.22 1.15 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.13 -0.87 5.06 -26.52 -0.13 -1.01 16 5 C -0.13 -0.76 5.96 -26.46 -0.16 -0.92 16 6 C -0.03 -0.28 6.33 -27.48 -0.17 -0.45 16 7 C 0.22 2.84 7.64 -155.32 -1.19 1.65 16 8 N -0.49 -7.51 11.20 -10.35 -0.12 -7.63 16 9 C 0.04 0.54 11.10 -17.36 -0.19 0.35 16 10 C -0.08 -1.12 6.45 -82.35 -0.53 -1.66 16 11 C 0.62 9.68 7.55 -12.82 -0.10 9.58 16 12 O -0.55 -9.21 13.11 5.20 0.07 -9.14 16 13 N -0.63 -9.23 3.68 -187.27 -0.69 -9.92 16 14 C 0.12 1.67 7.08 -7.34 -0.05 1.62 16 15 C -0.11 -1.65 1.06 -155.22 -0.16 -1.82 16 16 C 0.13 1.73 8.03 -7.48 -0.06 1.67 16 17 C -0.12 -2.08 6.41 -25.61 -0.16 -2.24 16 18 C 0.18 4.14 5.39 -2.83 -0.02 4.13 16 19 N -0.60 -14.51 3.41 -170.54 -0.58 -15.09 16 20 C -0.23 -6.14 10.28 -15.06 -0.15 -6.29 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -26.46 10.30 55.49 0.57 -25.89 16 24 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.15 2.87 6.70 -3.22 -0.02 2.84 16 29 N -0.42 -5.43 2.94 -102.72 -0.30 -5.74 16 30 H 0.11 1.43 5.29 -52.04 -0.28 1.15 16 31 H 0.06 0.51 7.80 -51.93 -0.41 0.11 16 32 H 0.06 0.70 7.52 -51.93 -0.39 0.31 16 33 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.18 2.65 5.10 -52.49 -0.27 2.38 16 40 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 41 H 0.08 1.26 5.43 -51.93 -0.28 0.97 16 42 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 47 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -32.40 383.11 -11.27 -43.66 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.84 Total: 0.48 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -3.13 Total: 6.81 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -1.12 Total: -64.26 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.40 -11.27 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072759886.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.908 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds