Wall clock time and date at job start Wed Apr 1 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.50528 * 2 1 4 4 C 1.53135 * 109.50898 * 120.08673 * 2 1 3 5 5 C 1.53247 * 109.52748 * 189.77800 * 4 2 1 6 6 N 1.46578 * 108.78175 * 309.41934 * 5 4 2 7 7 C 1.34866 * 127.49638 * 197.52287 * 6 5 4 8 8 C 1.36572 * 106.78470 * 180.02562 * 7 6 5 9 9 C 1.47328 * 126.21082 * 179.90804 * 8 7 6 10 10 O 1.21629 * 119.99661 * 359.70993 * 9 8 7 11 11 N 1.34771 * 119.99971 * 179.71335 * 9 8 7 12 12 C 1.47348 * 135.87841 * 359.63023 * 11 9 8 13 13 C 1.51980 * 87.57985 * 154.42915 * 12 11 9 14 14 C 1.47356 * 135.87773 * 179.97438 * 11 9 8 15 15 C 1.53720 * 116.52772 * 142.23614 * 13 12 11 16 16 C 1.55177 * 101.38760 * 164.89890 * 15 13 12 17 17 N 1.47559 * 105.03014 * 324.50896 * 16 15 13 18 18 C 1.36940 * 125.66008 * 203.91502 * 17 16 15 19 19 H 1.07994 * 120.00168 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99766 * 359.97438 * 18 17 16 21 21 N 1.31622 * 120.00022 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00152 * 179.97438 * 20 18 17 23 23 H 1.48511 * 109.47031 * 59.99446 * 22 20 18 24 24 H 1.48501 * 109.47442 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47205 * 299.99809 * 22 20 18 26 26 C 1.47400 * 108.68383 * 23.89200 * 17 16 15 27 27 N 1.35889 * 107.58047 * 359.64516 * 8 7 6 28 28 C 1.29793 * 108.84701 * 0.25463 * 27 8 7 29 29 C 1.51107 * 127.17206 * 179.88537 * 28 27 8 30 30 H 1.09007 * 109.47195 * 299.90666 * 1 2 3 31 31 H 1.08994 * 109.47456 * 59.91526 * 1 2 3 32 32 H 1.09008 * 109.47359 * 179.91393 * 1 2 3 33 33 H 1.09004 * 109.45846 * 69.76283 * 4 2 1 34 34 H 1.09003 * 109.45633 * 309.79295 * 4 2 1 35 35 H 1.08997 * 109.58098 * 189.62788 * 5 4 2 36 36 H 1.08996 * 109.58405 * 69.21197 * 5 4 2 37 37 H 1.08001 * 126.60615 * 359.90313 * 7 6 5 38 38 H 1.09004 * 113.53523 * 269.10145 * 12 11 9 39 39 H 1.09001 * 113.53442 * 39.75393 * 12 11 9 40 40 H 1.09003 * 113.53325 * 320.24702 * 14 11 9 41 41 H 1.09000 * 113.53034 * 90.82307 * 14 11 9 42 42 H 1.09001 * 111.03908 * 282.92430 * 15 13 12 43 43 H 1.09001 * 111.04350 * 46.87206 * 15 13 12 44 44 H 1.09000 * 110.33305 * 205.61947 * 16 15 13 45 45 H 1.09004 * 110.41635 * 83.43728 * 16 15 13 46 46 H 0.97001 * 119.99819 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.99631 * 238.52497 * 26 17 16 48 48 H 1.09004 * 110.02851 * 117.20938 * 26 17 16 49 49 H 1.08998 * 109.72026 * 315.66976 * 29 28 27 50 50 H 1.09001 * 109.72045 * 76.32183 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7236 1.2490 5 6 3.5541 -0.5151 1.3784 6 7 4.1878 -0.8503 0.0999 7 6 5.4903 -1.1174 -0.1257 8 6 5.6149 -1.3730 -1.4614 9 6 6.8611 -1.7129 -2.1700 10 8 7.9096 -1.7816 -1.5573 11 7 6.8393 -1.9477 -3.4969 12 6 5.8095 -1.9682 -4.5507 13 6 6.9139 -1.6535 -5.5462 14 6 7.8338 -2.3016 -4.5250 15 6 6.8182 -2.3410 -6.9178 16 6 7.8259 -1.5049 -7.7506 17 7 7.6916 -0.1262 -7.2421 18 6 8.0068 1.0136 -7.9325 19 1 7.8714 1.9800 -7.4699 20 6 8.5003 0.9268 -9.2270 21 7 8.6657 -0.2511 -9.7906 22 14 8.9296 2.4815 -10.1692 23 1 9.9798 3.2316 -9.4343 24 1 9.4329 2.1196 -11.5186 25 1 7.7179 3.3296 -10.3034 26 6 7.1612 -0.1794 -5.8678 27 7 4.3799 -1.2628 -2.0174 28 6 3.5284 -0.9507 -1.0888 29 6 2.0432 -0.7244 -1.2507 30 1 -0.3634 0.5124 0.8909 31 1 -0.3634 0.5151 -0.8891 32 1 -0.3634 -1.0277 -0.0015 33 1 1.8275 -1.7891 1.1644 34 1 1.5426 -0.3220 2.1310 35 1 3.9464 -1.1635 2.1618 36 1 3.7594 0.5262 1.6262 37 1 6.2826 -1.1255 0.6083 38 1 5.3572 -2.9490 -4.6981 39 1 5.0714 -1.1722 -4.4534 40 1 8.7856 -1.7838 -4.4063 41 1 7.9522 -3.3762 -4.6643 42 1 7.1314 -3.3832 -6.8558 43 1 5.8109 -2.2604 -7.3266 44 1 7.5679 -1.5450 -8.8088 45 1 8.8417 -1.8685 -7.5950 46 1 9.0109 -0.3118 -10.6951 47 1 6.2260 0.3772 -5.8073 48 1 7.8884 0.2371 -5.1707 49 1 1.8585 -0.1115 -2.1329 50 1 1.5343 -1.6827 -1.3548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072853024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:12 Heat of formation + Delta-G solvation = 87.567715 kcal Electronic energy + Delta-G solvation = -30248.524407 eV Core-core repulsion = 26278.504989 eV Total energy + Delta-G solvation = -3970.019418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.59369 -40.35233 -38.16531 -37.35599 -35.50259 -34.19251 -32.13129 -30.77685 -29.99976 -29.46216 -28.23433 -27.02473 -25.92807 -25.65173 -24.33481 -23.64600 -22.23884 -21.57072 -20.24726 -19.47354 -19.10487 -18.03887 -17.41370 -16.80687 -16.38708 -16.17317 -15.74555 -15.18120 -15.15925 -14.90531 -14.58202 -14.28132 -14.10353 -14.04317 -13.77090 -13.61664 -13.35093 -12.87969 -12.78917 -12.65544 -12.36286 -12.12709 -11.99102 -11.91214 -11.57985 -11.40346 -11.37111 -11.31973 -10.99887 -10.88318 -10.71018 -10.34242 -10.28201 -10.07158 -10.04009 -9.89547 -9.63510 -9.61061 -9.33293 -8.65073 -8.57019 -8.26139 -6.75357 -5.57962 -2.98829 1.54265 2.32623 2.34644 3.17491 3.45913 3.49749 3.51225 3.68026 3.80483 3.96782 4.06294 4.09842 4.53892 4.55352 4.61656 4.71849 4.75497 4.80425 4.89929 5.04863 5.07341 5.17545 5.20228 5.21931 5.25577 5.38862 5.42216 5.51382 5.57309 5.60342 5.72841 5.74174 5.81036 5.88066 5.91980 5.99455 6.05550 6.15027 6.34275 6.39737 6.44537 6.63968 6.71448 6.83191 6.86257 6.90047 7.59700 7.69832 7.71786 7.92907 8.04903 8.43410 8.47819 9.29761 9.90138 10.56024 11.46059 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.002387 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.980660 B =11725.021923 C =12531.261530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.131 4.131 5 C 0.102 3.898 6 N -0.455 5.455 7 C 0.031 3.969 8 C -0.050 4.050 9 C 0.627 3.373 10 O -0.555 6.555 11 N -0.627 5.627 12 C 0.129 3.871 13 C -0.107 4.107 14 C 0.123 3.877 15 C -0.128 4.128 16 C 0.154 3.846 17 N -0.605 5.605 18 C -0.219 4.219 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.166 3.834 27 N -0.448 5.448 28 C 0.207 3.793 29 C -0.028 4.028 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.187 0.813 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.013 0.987 46 H 0.252 0.748 47 H 0.029 0.971 48 H 0.023 0.977 49 H 0.098 0.902 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 -4.068 23.441 29.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.098 0.902 4 C -0.168 4.168 5 C -0.020 4.020 6 N -0.138 5.138 7 C -0.108 4.108 8 C -0.179 4.179 9 C 0.417 3.583 10 O -0.434 6.434 11 N -0.360 5.360 12 C 0.006 3.994 13 C -0.108 4.108 14 C 0.001 3.999 15 C -0.167 4.167 16 C 0.029 3.971 17 N -0.331 5.331 18 C -0.347 4.347 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.572 5.572 22 Si 0.745 3.255 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.041 3.959 27 N -0.168 5.168 28 C -0.057 4.057 29 C -0.067 4.067 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.204 0.796 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.031 0.969 46 H 0.062 0.938 47 H 0.047 0.953 48 H 0.041 0.959 49 H 0.117 0.883 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.437 -4.079 23.072 29.206 hybrid contribution 0.593 0.871 0.564 1.195 sum -16.843 -3.208 23.636 29.200 Atomic orbital electron populations 1.21797 0.93556 1.02430 1.02496 1.21274 0.96869 0.99962 0.93624 0.90248 1.21989 0.92839 1.02424 0.99558 1.22079 0.94057 1.02477 0.83419 1.45318 1.07379 1.51505 1.09609 1.22375 0.86123 1.04073 0.98185 1.20523 0.92656 1.13336 0.91423 1.16343 0.86091 0.76510 0.79355 1.90778 1.31550 1.55101 1.66000 1.49451 1.13839 1.67463 1.05211 1.22833 0.92697 1.01913 0.81994 1.22152 0.95712 0.98544 0.94417 1.22870 0.94373 0.99826 0.82810 1.22750 1.01730 0.98380 0.93826 1.21967 0.93502 0.81921 0.99694 1.44618 1.75727 1.02863 1.09877 1.19029 1.35577 0.84975 0.95147 0.90637 1.24764 1.01765 0.96973 0.97242 1.69791 1.51862 1.21042 1.14541 0.86158 0.78154 0.82153 0.79068 1.21300 1.21611 1.21220 1.20722 0.96604 0.90567 0.88045 1.70467 0.99136 1.17152 1.30002 1.23544 0.96606 1.05056 0.80490 1.20305 0.84871 1.02256 0.99242 0.92181 0.91831 0.92192 0.90449 0.89081 0.88865 0.89383 0.79597 0.90141 0.89488 0.90234 0.89895 0.91946 0.91373 0.87634 0.96931 0.93756 0.95310 0.95922 0.88347 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.17 37.16 0.34 -0.15 16 2 C -0.10 -0.46 2.74 -90.36 -0.25 -0.71 16 3 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 4 C -0.13 -0.48 5.24 -26.53 -0.14 -0.61 16 5 C 0.10 0.51 6.96 -3.87 -0.03 0.48 16 6 N -0.46 -4.39 3.11 -113.42 -0.35 -4.74 16 7 C 0.03 0.38 11.32 -16.82 -0.19 0.19 16 8 C -0.05 -0.79 6.95 -82.97 -0.58 -1.36 16 9 C 0.63 11.54 8.06 -12.57 -0.10 11.44 16 10 O -0.56 -11.50 17.65 5.25 0.09 -11.41 16 11 N -0.63 -11.08 3.70 -186.97 -0.69 -11.77 16 12 C 0.13 2.07 7.12 -7.59 -0.05 2.01 16 13 C -0.11 -1.95 1.04 -155.26 -0.16 -2.11 16 14 C 0.12 2.16 7.90 -7.60 -0.06 2.10 16 15 C -0.13 -2.38 6.50 -25.20 -0.16 -2.55 16 16 C 0.15 3.75 5.90 -2.31 -0.01 3.74 16 17 N -0.60 -15.93 3.41 -170.37 -0.58 -16.51 16 18 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16 22 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.17 3.70 6.78 -3.61 -0.02 3.68 16 27 N -0.45 -6.57 9.80 -7.00 -0.07 -6.64 16 28 C 0.21 2.30 7.64 -154.64 -1.18 1.12 16 29 C -0.03 -0.20 5.64 -27.49 -0.16 -0.36 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.19 8.14 -51.92 -0.42 -0.23 16 33 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 34 H 0.09 0.16 8.12 -51.93 -0.42 -0.26 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.44 7.42 -51.93 -0.39 1.05 16 40 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 41 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 42 H 0.06 1.01 7.98 -51.93 -0.41 0.59 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.11 2.88 5.89 -51.93 -0.31 2.57 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.03 0.64 8.05 -51.93 -0.42 0.23 16 48 H 0.02 0.54 7.92 -51.93 -0.41 0.12 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 LS Contribution 396.66 15.07 5.98 5.98 Total: -1.00 -35.55 396.66 -11.32 -46.88 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -8.23 Total: -2.66 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -3.01 Total: 10.04 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -1.13 Total: -66.32 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.55 -11.32 -46.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072853024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.445 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds