Wall clock time and date at job start Wed Apr 1 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.50528 * 2 1 4 4 C 1.53135 * 109.50898 * 120.08673 * 2 1 3 5 5 C 1.53247 * 109.52748 * 189.77800 * 4 2 1 6 6 N 1.46578 * 108.78175 * 309.41934 * 5 4 2 7 7 C 1.34866 * 127.49638 * 197.52287 * 6 5 4 8 8 C 1.36572 * 106.78470 * 180.02562 * 7 6 5 9 9 C 1.47328 * 126.21082 * 179.90804 * 8 7 6 10 10 O 1.21629 * 119.99661 * 359.70993 * 9 8 7 11 11 N 1.34771 * 119.99971 * 179.71335 * 9 8 7 12 12 C 1.47348 * 135.87841 * 359.63023 * 11 9 8 13 13 C 1.51980 * 87.57985 * 154.42915 * 12 11 9 14 14 C 1.47356 * 135.87773 * 179.97438 * 11 9 8 15 15 C 1.53720 * 116.52772 * 142.23614 * 13 12 11 16 16 C 1.55177 * 101.38760 * 164.89890 * 15 13 12 17 17 N 1.47559 * 105.03014 * 324.50896 * 16 15 13 18 18 C 1.36940 * 125.66008 * 203.91502 * 17 16 15 19 19 H 1.07994 * 120.00168 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99766 * 359.97438 * 18 17 16 21 21 N 1.31622 * 120.00022 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00152 * 179.97438 * 20 18 17 23 23 H 1.48511 * 109.47031 * 59.99446 * 22 20 18 24 24 H 1.48501 * 109.47442 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47205 * 299.99809 * 22 20 18 26 26 C 1.47400 * 108.68383 * 23.89200 * 17 16 15 27 27 N 1.35889 * 107.58047 * 359.64516 * 8 7 6 28 28 C 1.29793 * 108.84701 * 0.25463 * 27 8 7 29 29 C 1.51107 * 127.17206 * 179.88537 * 28 27 8 30 30 H 1.09007 * 109.47195 * 299.90666 * 1 2 3 31 31 H 1.08994 * 109.47456 * 59.91526 * 1 2 3 32 32 H 1.09008 * 109.47359 * 179.91393 * 1 2 3 33 33 H 1.09004 * 109.45846 * 69.76283 * 4 2 1 34 34 H 1.09003 * 109.45633 * 309.79295 * 4 2 1 35 35 H 1.08997 * 109.58098 * 189.62788 * 5 4 2 36 36 H 1.08996 * 109.58405 * 69.21197 * 5 4 2 37 37 H 1.08001 * 126.60615 * 359.90313 * 7 6 5 38 38 H 1.09004 * 113.53523 * 269.10145 * 12 11 9 39 39 H 1.09001 * 113.53442 * 39.75393 * 12 11 9 40 40 H 1.09003 * 113.53325 * 320.24702 * 14 11 9 41 41 H 1.09000 * 113.53034 * 90.82307 * 14 11 9 42 42 H 1.09001 * 111.03908 * 282.92430 * 15 13 12 43 43 H 1.09001 * 111.04350 * 46.87206 * 15 13 12 44 44 H 1.09000 * 110.33305 * 205.61947 * 16 15 13 45 45 H 1.09004 * 110.41635 * 83.43728 * 16 15 13 46 46 H 0.97001 * 119.99819 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.99631 * 238.52497 * 26 17 16 48 48 H 1.09004 * 110.02851 * 117.20938 * 26 17 16 49 49 H 1.08998 * 109.72026 * 315.66976 * 29 28 27 50 50 H 1.09001 * 109.72045 * 76.32183 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7236 1.2490 5 6 3.5541 -0.5151 1.3784 6 7 4.1878 -0.8503 0.0999 7 6 5.4903 -1.1174 -0.1257 8 6 5.6149 -1.3730 -1.4614 9 6 6.8611 -1.7129 -2.1700 10 8 7.9096 -1.7816 -1.5573 11 7 6.8393 -1.9477 -3.4969 12 6 5.8095 -1.9682 -4.5507 13 6 6.9139 -1.6535 -5.5462 14 6 7.8338 -2.3016 -4.5250 15 6 6.8182 -2.3410 -6.9178 16 6 7.8259 -1.5049 -7.7506 17 7 7.6916 -0.1262 -7.2421 18 6 8.0068 1.0136 -7.9325 19 1 7.8714 1.9800 -7.4699 20 6 8.5003 0.9268 -9.2270 21 7 8.6657 -0.2511 -9.7906 22 14 8.9296 2.4815 -10.1692 23 1 9.9798 3.2316 -9.4343 24 1 9.4329 2.1196 -11.5186 25 1 7.7179 3.3296 -10.3034 26 6 7.1612 -0.1794 -5.8678 27 7 4.3799 -1.2628 -2.0174 28 6 3.5284 -0.9507 -1.0888 29 6 2.0432 -0.7244 -1.2507 30 1 -0.3634 0.5124 0.8909 31 1 -0.3634 0.5151 -0.8891 32 1 -0.3634 -1.0277 -0.0015 33 1 1.8275 -1.7891 1.1644 34 1 1.5426 -0.3220 2.1310 35 1 3.9464 -1.1635 2.1618 36 1 3.7594 0.5262 1.6262 37 1 6.2826 -1.1255 0.6083 38 1 5.3572 -2.9490 -4.6981 39 1 5.0714 -1.1722 -4.4534 40 1 8.7856 -1.7838 -4.4063 41 1 7.9522 -3.3762 -4.6643 42 1 7.1314 -3.3832 -6.8558 43 1 5.8109 -2.2604 -7.3266 44 1 7.5679 -1.5450 -8.8088 45 1 8.8417 -1.8685 -7.5950 46 1 9.0109 -0.3118 -10.6951 47 1 6.2260 0.3772 -5.8073 48 1 7.8884 0.2371 -5.1707 49 1 1.8585 -0.1115 -2.1329 50 1 1.5343 -1.6827 -1.3548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072853024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:11 Heat of formation + Delta-G solvation = 66.045514 kcal Electronic energy + Delta-G solvation = -30249.457680 eV Core-core repulsion = 26278.504989 eV Total energy + Delta-G solvation = -3970.952691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.44555 -41.80906 -39.48425 -38.01097 -37.30076 -34.88429 -34.10128 -31.80645 -31.21729 -30.47072 -29.76547 -28.03197 -27.38569 -27.10106 -25.53153 -24.70756 -23.36369 -22.19520 -22.11745 -20.38615 -20.06081 -19.54414 -18.81612 -18.36248 -17.35040 -17.19751 -17.07028 -16.68016 -16.35875 -16.03063 -15.62936 -15.52350 -15.33948 -14.96317 -14.88557 -14.54393 -14.32482 -14.16909 -14.01262 -13.79330 -13.67295 -13.19488 -13.15456 -13.10446 -12.88732 -12.72717 -12.56964 -12.47706 -12.04975 -11.97030 -11.95025 -11.82100 -11.76572 -11.67482 -11.61310 -11.32306 -11.16215 -10.84534 -10.70612 -10.69456 -9.84939 -9.41640 -8.88613 -7.76190 -5.20708 0.51534 1.35399 1.46159 1.49759 1.56179 1.57377 1.94338 2.46191 2.49838 3.07125 3.24051 3.39866 3.45812 3.59668 3.62943 3.70195 3.71101 3.84970 3.99648 4.16166 4.17892 4.27154 4.30942 4.37626 4.42146 4.45463 4.59570 4.65272 4.69540 4.72093 4.77338 4.81161 4.85989 4.87423 4.91965 4.95472 5.00049 5.08572 5.10524 5.15503 5.16112 5.22570 5.35134 5.44347 5.45916 5.47765 5.69278 5.84759 6.07236 6.33304 6.68698 6.76304 7.12471 7.15492 7.78037 8.42836 9.25229 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.002387 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.980660 B =11725.021923 C =12531.261530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.125 4.125 5 C 0.091 3.909 6 N -0.447 5.447 7 C 0.045 3.955 8 C -0.093 4.093 9 C 0.620 3.380 10 O -0.592 6.592 11 N -0.633 5.633 12 C 0.148 3.852 13 C -0.101 4.101 14 C 0.123 3.877 15 C -0.106 4.106 16 C 0.154 3.846 17 N -0.625 5.625 18 C -0.243 4.243 19 H 0.074 0.926 20 C -0.064 4.064 21 N -0.946 5.946 22 Si 0.981 3.019 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.275 1.275 26 C 0.168 3.832 27 N -0.482 5.482 28 C 0.209 3.791 29 C -0.028 4.028 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.203 0.797 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.076 0.924 45 H -0.013 1.013 46 H 0.249 0.751 47 H 0.028 0.972 48 H 0.002 0.998 49 H 0.093 0.907 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.475 -4.312 25.502 32.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.162 4.162 5 C -0.028 4.028 6 N -0.128 5.128 7 C -0.097 4.097 8 C -0.221 4.221 9 C 0.412 3.588 10 O -0.474 6.474 11 N -0.365 5.365 12 C 0.025 3.975 13 C -0.102 4.102 14 C 0.001 3.999 15 C -0.145 4.145 16 C 0.030 3.970 17 N -0.352 5.352 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.808 3.192 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.201 1.201 26 C 0.042 3.958 27 N -0.202 5.202 28 C -0.056 4.056 29 C -0.067 4.067 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.220 0.780 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.115 0.885 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.005 0.995 46 H 0.058 0.942 47 H 0.046 0.954 48 H 0.020 0.980 49 H 0.112 0.888 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.080 -4.320 25.158 32.478 hybrid contribution 1.372 1.004 -0.004 1.700 sum -18.708 -3.316 25.154 31.523 Atomic orbital electron populations 1.21767 0.92349 1.02869 1.02910 1.21249 0.97726 0.99385 0.92857 0.90724 1.22018 0.91727 1.02456 1.00029 1.22540 0.94850 1.03815 0.81640 1.45615 1.06391 1.49871 1.10919 1.22608 0.87575 1.02184 0.97299 1.20325 0.92250 1.16838 0.92724 1.16821 0.86787 0.75815 0.79398 1.90731 1.33065 1.56891 1.66728 1.49530 1.14180 1.67409 1.05417 1.22774 0.91437 1.03275 0.79965 1.21948 0.97648 0.95677 0.94930 1.22924 0.93214 1.01167 0.82603 1.22590 1.00530 0.99107 0.92278 1.21809 0.93847 0.82220 0.99159 1.44924 1.75763 1.03098 1.11379 1.19363 1.36044 0.85930 0.95875 0.90859 1.25605 1.01851 1.00135 0.98038 1.70037 1.52200 1.22790 1.14478 0.85129 0.78053 0.78595 0.77385 1.20908 1.21494 1.20126 1.20745 0.95519 0.93617 0.85890 1.70362 0.99220 1.18889 1.31717 1.24223 0.97726 1.03214 0.80437 1.20510 0.82489 1.03134 1.00578 0.90967 0.92284 0.91727 0.90460 0.86300 0.86832 0.87978 0.78021 0.87103 0.89949 0.92670 0.86915 0.88471 0.90191 0.90601 0.99455 0.94170 0.95427 0.97966 0.88813 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.54 9.17 71.98 0.66 0.12 16 2 C -0.09 -0.61 2.74 -10.63 -0.03 -0.64 16 3 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 4 C -0.12 -0.45 5.24 30.72 0.16 -0.29 16 5 C 0.09 0.62 6.96 86.45 0.60 1.22 16 6 N -0.45 -7.74 3.11 -512.75 -1.60 -9.33 16 7 C 0.04 1.06 11.32 83.84 0.95 2.01 16 8 C -0.09 -2.92 6.95 40.52 0.28 -2.64 16 9 C 0.62 23.23 8.06 86.64 0.70 23.93 16 10 O -0.59 -25.27 17.65 -4.12 -0.07 -25.34 16 11 N -0.63 -22.38 3.70 -863.68 -3.19 -25.58 16 12 C 0.15 4.57 7.12 83.62 0.60 5.16 16 13 C -0.10 -3.64 1.04 -52.65 -0.05 -3.70 16 14 C 0.12 4.29 7.90 83.61 0.66 4.95 16 15 C -0.11 -3.83 6.50 31.58 0.21 -3.63 16 16 C 0.15 7.72 5.90 86.92 0.51 8.23 16 17 N -0.63 -34.03 3.41 -692.92 -2.36 -36.39 16 18 C -0.24 -14.34 10.28 84.03 0.86 -13.48 16 19 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 20 C -0.06 -3.71 5.49 84.86 0.47 -3.25 16 21 N -0.95 -57.25 10.09 21.65 0.22 -57.03 16 22 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.17 7.69 6.78 86.17 0.58 8.27 16 27 N -0.48 -13.89 9.80 -176.07 -1.73 -15.61 16 28 C 0.21 4.36 7.64 138.05 1.06 5.41 16 29 C -0.03 -0.35 5.64 30.10 0.17 -0.18 16 30 H 0.07 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.08 0.34 8.11 -2.38 -0.02 0.32 16 34 H 0.12 -0.15 8.12 -2.39 -0.02 -0.17 16 35 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.20 3.91 8.06 -2.91 -0.02 3.88 16 38 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 39 H 0.08 2.67 7.42 -2.39 -0.02 2.65 16 40 H 0.05 2.18 8.06 -2.39 -0.02 2.16 16 41 H 0.11 3.26 8.04 -2.39 -0.02 3.25 16 42 H 0.10 2.87 7.98 -2.39 -0.02 2.85 16 43 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.08 4.27 5.89 -2.39 -0.01 4.26 16 45 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.03 1.27 8.05 -2.39 -0.02 1.25 16 48 H 0.00 0.12 7.92 -2.38 -0.02 0.10 16 49 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.10 1.07 8.11 -2.39 -0.02 1.05 16 Total: -1.00 -81.32 396.66 2.60 -78.72 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.92 Total: 10.01 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 8.38 Total: 31.50 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -8.66 Total: -143.94 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.07 Total: -25.34 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -81.32 2.60 -78.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072853024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.764 kcal (2) G-P(sol) polarization free energy of solvation -81.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds