Wall clock time and date at job start Wed Apr 1 2020 03:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40299 * 126.08899 * 2 1 4 4 C 1.31076 * 108.26673 * 180.02562 * 3 2 1 5 5 C 1.39295 * 108.07743 * 0.02562 * 4 3 2 6 6 C 1.34323 * 126.09150 * 179.97438 * 2 1 3 7 7 C 1.50825 * 128.03542 * 359.79250 * 6 2 1 8 8 C 1.53358 * 108.38557 * 196.66216 * 7 6 2 9 9 H 1.09004 * 109.46214 * 70.06731 * 8 7 6 10 10 C 1.50692 * 109.46704 * 190.04948 * 8 7 6 11 11 O 1.21283 * 119.99965 * 92.64555 * 10 8 7 12 12 N 1.34774 * 120.00302 * 272.64430 * 10 8 7 13 13 C 1.47890 * 134.34635 * 174.62924 * 12 10 8 14 14 C 1.52368 * 85.59539 * 156.54489 * 13 12 10 15 15 C 1.47888 * 134.33978 * 354.66717 * 12 10 8 16 16 C 1.53649 * 116.39799 * 141.34825 * 14 13 12 17 17 C 1.54603 * 102.89847 * 163.01142 * 16 14 13 18 18 N 1.47127 * 107.36580 * 339.15129 * 17 16 14 19 19 C 1.36940 * 125.59004 * 179.11389 * 18 17 16 20 20 H 1.07998 * 119.99951 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99781 * 359.97180 * 19 18 17 22 22 N 1.31619 * 119.99973 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00106 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47047 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47287 * 120.00102 * 23 21 19 26 26 H 1.48504 * 109.46772 * 239.99868 * 23 21 19 27 27 C 1.47728 * 108.82650 * 359.07484 * 18 17 16 28 28 C 1.53112 * 109.50576 * 310.06296 * 8 7 6 29 29 C 1.50849 * 127.90016 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.47087 * 90.02408 * 1 2 3 31 31 H 1.08997 * 109.47382 * 210.02390 * 1 2 3 32 32 H 1.08999 * 109.47561 * 330.03074 * 1 2 3 33 33 H 1.07994 * 125.95985 * 180.02562 * 4 3 2 34 34 H 1.08996 * 109.67882 * 76.93468 * 7 6 2 35 35 H 1.09006 * 109.68114 * 316.38776 * 7 6 2 36 36 H 1.09004 * 113.85434 * 42.37670 * 13 12 10 37 37 H 1.09001 * 113.96723 * 270.72751 * 13 12 10 38 38 H 1.09004 * 113.85000 * 89.28785 * 15 12 10 39 39 H 1.09000 * 113.85984 * 317.62259 * 15 12 10 40 40 H 1.08992 * 110.76376 * 44.60571 * 16 14 13 41 41 H 1.09007 * 110.75512 * 281.41169 * 16 14 13 42 42 H 1.09001 * 109.86564 * 98.59940 * 17 16 14 43 43 H 1.08997 * 109.86660 * 219.56855 * 17 16 14 44 44 H 0.97007 * 120.00238 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.39948 * 141.25049 * 27 18 17 46 46 H 1.08998 * 110.40033 * 263.54547 * 27 18 17 47 47 H 1.08996 * 109.46750 * 190.29523 * 28 8 7 48 48 H 1.09004 * 109.46221 * 310.26959 * 28 8 7 49 49 H 1.08998 * 109.67901 * 76.80356 * 29 5 4 50 50 H 1.09005 * 109.71052 * 316.26698 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1338 0.0000 4 6 3.5393 0.7326 -0.0006 5 6 3.5455 -0.6603 -0.0015 6 6 2.2562 -1.0854 0.0005 7 6 1.8437 -2.5362 0.0054 8 6 3.0537 -3.3817 0.4214 9 1 3.2693 -3.2128 1.4764 10 6 2.7475 -4.8403 0.1986 11 8 3.0512 -5.3705 -0.8490 12 7 2.1363 -5.5556 1.1636 13 6 1.6080 -6.9341 1.2508 14 6 1.7904 -6.7832 2.7560 15 6 1.7264 -5.2740 2.5563 16 6 0.6981 -7.4019 3.6419 17 6 1.3776 -7.4727 5.0289 18 7 2.8314 -7.4213 4.8087 19 6 3.7871 -7.4419 5.7892 20 1 4.8333 -7.4002 5.5245 21 6 3.4112 -7.5161 7.1234 22 7 2.1361 -7.5674 7.4459 23 14 4.7148 -7.5434 8.4610 24 1 6.0622 -7.4766 7.8405 25 1 4.5253 -6.3775 9.3608 26 1 4.5931 -8.7987 9.2451 27 6 3.0912 -7.3449 3.3565 28 6 4.2699 -2.9816 -0.4183 29 6 4.7399 -1.5817 -0.0030 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5133 33 1 4.4105 1.3707 -0.0003 34 1 1.5173 -2.8283 -0.9926 35 1 1.0306 -2.6842 0.7162 36 1 2.2581 -7.6847 0.8011 37 1 0.5676 -7.0301 0.9403 38 1 0.7220 -4.8598 2.6450 39 1 2.4693 -4.7213 3.1314 40 1 0.4338 -8.3990 3.2899 41 1 -0.1821 -6.7597 3.6752 42 1 1.0650 -6.6246 5.6382 43 1 1.1088 -8.4047 5.5259 44 1 1.8734 -7.6197 8.3783 45 1 3.9241 -6.6715 3.1545 46 1 3.2996 -8.3367 2.9551 47 1 5.0751 -3.6979 -0.2557 48 1 3.9967 -2.9758 -1.4735 49 1 5.1743 -1.6210 0.9959 50 1 5.4834 -1.2186 -0.7126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072916844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:04 Heat of formation + Delta-G solvation = 101.439584 kcal Electronic energy + Delta-G solvation = -30660.224037 eV Core-core repulsion = 26690.806148 eV Total energy + Delta-G solvation = -3969.417889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78412 -40.59056 -38.69553 -36.19693 -35.58385 -33.93755 -32.27763 -30.75904 -30.09131 -29.47779 -28.25937 -26.84607 -26.25154 -25.92604 -24.29110 -23.45551 -22.17859 -21.14179 -20.32453 -19.30312 -18.81292 -18.29026 -17.20091 -16.94291 -16.63049 -15.98142 -15.62623 -15.47781 -14.77835 -14.69547 -14.44386 -14.33898 -14.02129 -13.84136 -13.75318 -13.45365 -13.09903 -13.02617 -12.94937 -12.62496 -12.57381 -12.26458 -12.05401 -11.91346 -11.85101 -11.72301 -11.15968 -11.03919 -10.95638 -10.90786 -10.80884 -10.66471 -10.43022 -10.23272 -10.09241 -9.91197 -9.71166 -9.49002 -9.44902 -8.64442 -8.57699 -8.39367 -6.88415 -5.75891 -3.09365 1.64021 2.21482 2.60157 2.67825 2.85355 3.37210 3.43559 3.45453 4.10093 4.27700 4.41248 4.47997 4.50946 4.62842 4.71328 4.83454 4.89011 4.94758 4.95576 5.06672 5.14456 5.16277 5.21223 5.25567 5.40809 5.44012 5.46197 5.57261 5.63223 5.65294 5.68890 5.70968 5.72272 5.80043 5.94111 5.99952 6.09846 6.10617 6.17532 6.17878 6.42248 6.46662 6.48473 6.62929 6.68100 6.79706 7.50236 7.51556 7.55485 7.77866 7.78818 8.19811 8.20538 9.17686 9.77356 10.42537 11.35726 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.002721 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.193006 B =10289.083227 C =10939.366724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.302 5.302 4 C 0.055 3.945 5 C -0.237 4.237 6 C 0.088 3.912 7 C -0.039 4.039 8 C -0.094 4.094 9 H 0.097 0.903 10 C 0.540 3.460 11 O -0.545 6.545 12 N -0.639 5.639 13 C 0.121 3.879 14 C -0.104 4.104 15 C 0.121 3.879 16 C -0.132 4.132 17 C 0.179 3.821 18 N -0.605 5.605 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.163 3.837 28 C -0.099 4.099 29 C -0.040 4.040 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.183 0.817 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.039 0.961 46 H 0.025 0.975 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 12.002 -15.444 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 N -0.123 5.123 4 C -0.130 4.130 5 C -0.249 4.249 6 C -0.040 4.040 7 C -0.079 4.079 8 C -0.116 4.116 9 H 0.115 0.885 10 C 0.329 3.671 11 O -0.423 6.423 12 N -0.374 5.374 13 C -0.002 4.002 14 C -0.106 4.106 15 C -0.001 4.001 16 C -0.170 4.170 17 C 0.054 3.946 18 N -0.331 5.331 19 C -0.355 4.355 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.037 3.963 28 C -0.137 4.137 29 C -0.078 4.078 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.200 0.800 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.749 12.857 -15.918 21.005 hybrid contribution 0.939 -0.598 0.897 1.430 sum -3.809 12.258 -15.021 19.759 Atomic orbital electron populations 1.21866 0.74381 1.04602 1.03384 1.48168 1.06432 1.03416 1.56923 1.77520 1.01580 1.07411 1.25814 1.23573 0.95207 0.94448 0.99741 1.19946 0.94176 0.93856 1.16887 1.20706 0.91178 0.90169 1.01969 1.20118 0.97533 0.87059 1.03152 1.21218 0.96442 0.90992 1.02944 0.88482 1.20124 0.77179 0.87635 0.82154 1.90686 1.53307 1.72020 1.26284 1.50294 1.57661 1.15309 1.14096 1.22985 0.98891 0.83535 0.94748 1.22544 1.00063 0.94692 0.93291 1.23067 1.00252 0.97404 0.79411 1.22673 0.96434 0.99671 0.98271 1.21198 0.82501 1.01176 0.89723 1.44560 1.02365 1.87002 0.99219 1.19088 0.87568 1.43523 0.85354 0.90424 1.24782 0.96330 1.02202 0.97041 1.69964 1.13497 1.57014 1.16456 0.86060 0.80545 0.77251 0.82014 1.20494 1.21756 1.21764 1.21114 0.92443 0.96912 0.85880 1.21448 0.96074 0.96299 0.99910 1.20024 0.93918 0.92083 1.01786 0.90717 0.89472 0.89159 0.80035 0.89234 0.89842 0.90021 0.89794 0.89811 0.89436 0.91734 0.91835 0.93508 0.93836 0.93813 0.94232 0.95737 0.90686 0.90792 0.90938 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.32 59.85 0.68 1.36 16 2 N -0.37 -4.00 4.00 -63.88 -0.26 -4.25 16 3 N -0.30 -3.74 12.59 30.54 0.38 -3.35 16 4 C 0.05 0.60 12.00 -17.48 -0.21 0.39 16 5 C -0.24 -2.60 5.91 -105.05 -0.62 -3.22 16 6 C 0.09 0.96 6.73 -82.33 -0.55 0.41 16 7 C -0.04 -0.38 5.18 -27.64 -0.14 -0.53 16 8 C -0.09 -1.05 2.32 -91.53 -0.21 -1.27 16 9 H 0.10 1.08 7.76 -51.93 -0.40 0.68 16 10 C 0.54 7.56 7.10 -10.99 -0.08 7.49 16 11 O -0.55 -9.41 17.04 5.56 0.09 -9.32 16 12 N -0.64 -8.63 3.62 -186.84 -0.68 -9.30 16 13 C 0.12 1.60 8.23 -3.60 -0.03 1.57 16 14 C -0.10 -1.59 1.00 -154.59 -0.15 -1.74 16 15 C 0.12 1.60 7.72 -3.60 -0.03 1.57 16 16 C -0.13 -2.12 6.34 -25.55 -0.16 -2.28 16 17 C 0.18 3.99 5.39 -2.86 -0.02 3.98 16 18 N -0.60 -14.52 3.41 -170.21 -0.58 -15.10 16 19 C -0.23 -6.09 10.28 -15.06 -0.15 -6.25 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -26.07 10.30 55.49 0.57 -25.50 16 23 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 C 0.16 3.15 6.67 -2.90 -0.02 3.13 16 28 C -0.10 -1.07 4.62 -26.47 -0.12 -1.19 16 29 C -0.04 -0.38 6.28 -27.60 -0.17 -0.55 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.44 7.57 -51.93 -0.39 0.05 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 35 H 0.08 0.70 7.76 -51.93 -0.40 0.30 16 36 H 0.08 1.13 8.13 -51.93 -0.42 0.70 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 39 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.88 7.99 -51.93 -0.41 0.47 16 42 H 0.05 1.16 7.39 -51.93 -0.38 0.77 16 43 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 48 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -33.43 398.20 -9.84 -43.27 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -8.25 Total: -1.56 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.10 Total: 2.56 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.56 Total: -57.51 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.43 -9.84 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072916844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.707 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds