Wall clock time and date at job start Wed Apr 1 2020 02:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46365 * 2 1 4 4 C 1.53103 * 109.46879 * 240.00885 * 2 1 3 5 5 C 1.53401 * 109.64848 * 169.93821 * 4 2 1 6 6 C 1.50720 * 108.33216 * 50.01692 * 5 4 2 7 7 N 1.34313 * 128.90363 * 163.25237 * 6 5 4 8 8 H 0.97001 * 124.97727 * 0.18925 * 7 6 5 9 9 N 1.28842 * 110.04063 * 180.46243 * 7 6 5 10 10 C 1.32210 * 110.15063 * 359.53478 * 9 7 6 11 11 C 1.47710 * 126.68132 * 180.13646 * 10 9 7 12 12 O 1.21570 * 120.00196 * 180.28362 * 11 10 9 13 13 N 1.34775 * 119.99662 * 0.28245 * 11 10 9 14 14 C 1.47355 * 135.88148 * 359.63282 * 13 11 10 15 15 C 1.52259 * 87.47553 * 154.22252 * 14 13 11 16 16 C 1.47355 * 135.87660 * 179.97438 * 13 11 10 17 17 C 1.53719 * 116.39458 * 142.36618 * 15 14 13 18 18 C 1.55184 * 101.38265 * 165.09586 * 17 15 14 19 19 N 1.47546 * 105.03483 * 324.51084 * 18 17 15 20 20 C 1.36943 * 125.66038 * 203.87144 * 19 18 17 21 21 H 1.07998 * 119.99684 * 180.02562 * 20 19 18 22 22 C 1.38809 * 119.99834 * 0.02562 * 20 19 18 23 23 N 1.31622 * 120.00168 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00032 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47034 * 60.00207 * 24 22 20 26 26 H 1.48502 * 109.47148 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46773 * 300.00155 * 24 22 20 28 28 C 1.47402 * 108.68323 * 23.89330 * 19 18 17 29 29 C 1.35580 * 123.87666 * 343.36972 * 6 5 4 30 30 C 1.50382 * 124.62083 * 359.74088 * 29 6 5 31 31 H 1.09003 * 109.46722 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47214 * 299.99041 * 1 2 3 33 33 H 1.09005 * 109.46736 * 59.99011 * 1 2 3 34 34 H 1.09006 * 109.44039 * 49.88872 * 4 2 1 35 35 H 1.08996 * 109.41189 * 289.97967 * 4 2 1 36 36 H 1.08993 * 109.69407 * 290.31219 * 5 4 2 37 37 H 1.08994 * 109.72362 * 169.74542 * 5 4 2 38 38 H 1.09000 * 113.53329 * 268.84711 * 14 13 11 39 39 H 1.09009 * 113.53045 * 39.49233 * 14 13 11 40 40 H 1.08990 * 113.53605 * 320.50340 * 16 13 11 41 41 H 1.09003 * 113.53058 * 91.15506 * 16 13 11 42 42 H 1.08996 * 111.04110 * 283.12436 * 17 15 14 43 43 H 1.09000 * 111.03773 * 47.07579 * 17 15 14 44 44 H 1.09001 * 110.32701 * 205.61891 * 18 17 15 45 45 H 1.09004 * 110.41256 * 83.44214 * 18 17 15 46 46 H 0.97001 * 120.00567 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.99457 * 238.51974 * 28 19 18 48 48 H 1.09005 * 109.99637 * 117.19295 * 28 19 18 49 49 H 1.09005 * 109.69866 * 224.06067 * 30 29 6 50 50 H 1.08994 * 109.73801 * 103.47750 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0403 -0.7216 -1.2502 5 6 3.5533 -0.5091 -1.3870 6 6 4.1999 -0.8408 -0.0665 7 7 5.4917 -1.0938 0.2002 8 1 6.2058 -1.0919 -0.4564 9 7 5.6426 -1.3448 1.4549 10 6 4.4798 -1.2633 2.0787 11 6 4.2343 -1.4788 3.5192 12 8 3.1082 -1.3771 3.9658 13 7 5.2588 -1.7882 4.3385 14 6 6.7088 -2.0006 4.1852 15 6 6.8544 -1.5955 5.6457 16 6 5.4158 -2.0675 5.7768 17 6 7.9053 -2.3610 6.4657 18 6 8.0434 -1.4494 7.7139 19 7 7.8916 -0.0739 7.2020 20 6 8.3759 1.0586 7.8004 21 1 8.2106 2.0233 7.3439 22 6 9.0791 0.9666 8.9936 23 7 9.2800 -0.2091 9.5502 24 14 9.7404 2.5115 9.8095 25 1 8.6134 3.4248 10.1269 26 1 10.4480 2.1452 11.0627 27 1 10.6850 3.1923 8.8879 28 6 7.1316 -0.1211 5.9399 29 6 3.5222 -0.9370 1.1038 30 6 2.0412 -0.7230 1.2535 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 -0.3633 0.5140 -0.8900 34 1 1.5368 -0.3220 -2.1306 35 1 1.8299 -1.7876 -1.1645 36 1 3.7565 0.5304 -1.6444 37 1 3.9480 -1.1637 -2.1639 38 1 6.9787 -3.0389 3.9926 39 1 7.1795 -1.3052 3.4900 40 1 4.8044 -1.4282 6.4135 41 1 5.3257 -3.1245 6.0272 42 1 7.5413 -3.3506 6.7421 43 1 8.8493 -2.4299 5.9251 44 1 9.0252 -1.5776 8.1697 45 1 7.2588 -1.6732 8.4368 46 1 9.7718 -0.2735 10.3838 47 1 7.7208 0.3155 5.1335 48 1 6.1917 0.4200 6.0503 49 1 1.8455 -0.1127 2.1353 50 1 1.5385 -1.6849 1.3536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073097284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:37 Heat of formation + Delta-G solvation = 94.454175 kcal Electronic energy + Delta-G solvation = -30414.433781 eV Core-core repulsion = 26444.712982 eV Total energy + Delta-G solvation = -3969.720799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.98880 -40.44606 -38.04316 -37.79777 -35.57786 -32.94861 -32.16948 -31.77717 -30.21489 -29.41037 -28.21619 -26.71862 -26.10392 -25.76036 -24.03582 -23.67258 -22.84914 -21.38232 -20.30645 -19.39986 -18.93449 -18.13767 -17.85736 -16.92009 -16.60266 -16.08198 -15.70011 -15.21446 -14.96277 -14.72883 -14.56305 -14.32862 -13.94808 -13.68609 -13.54659 -13.36364 -13.33742 -12.83772 -12.70919 -12.49326 -12.33392 -12.09972 -11.99256 -11.91921 -11.47204 -11.23781 -11.07934 -10.97915 -10.92724 -10.83379 -10.75432 -10.64945 -10.37859 -10.11161 -10.07937 -9.71835 -9.68415 -9.45446 -9.41767 -8.79917 -8.61281 -8.43303 -6.80173 -5.62062 -3.03245 1.53052 1.94056 2.61105 3.02623 3.43231 3.47292 3.48602 3.50648 4.15329 4.30176 4.42850 4.47280 4.50585 4.68044 4.74287 4.91546 4.96723 5.05938 5.12630 5.19677 5.26360 5.31609 5.43574 5.52516 5.53128 5.56078 5.60518 5.64940 5.69511 5.73072 5.75310 5.83252 5.88293 5.90694 6.01229 6.06753 6.14871 6.16884 6.25180 6.33595 6.38137 6.57348 6.63479 6.78044 6.81779 6.83513 7.54576 7.65435 7.69119 7.88275 7.90973 8.34263 8.39018 9.25457 9.85758 10.51100 11.41944 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.002306 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.370882 B =12141.731255 C =12329.747035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.046 4.046 6 C 0.006 3.994 7 N -0.376 5.376 8 H 0.444 0.556 9 N -0.255 5.255 10 C 0.005 3.995 11 C 0.627 3.373 12 O -0.537 6.537 13 N -0.630 5.630 14 C 0.123 3.877 15 C -0.105 4.105 16 C 0.124 3.876 17 C -0.128 4.128 18 C 0.154 3.846 19 N -0.604 5.604 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.166 3.834 29 C -0.143 4.143 30 C -0.037 4.037 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.013 0.987 46 H 0.252 0.748 47 H 0.028 0.972 48 H 0.024 0.976 49 H 0.084 0.916 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.468 -5.098 -24.370 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.085 4.085 6 C -0.121 4.121 7 N -0.089 5.089 8 H 0.288 0.712 9 N -0.091 5.091 10 C -0.154 4.154 11 C 0.414 3.586 12 O -0.412 6.412 13 N -0.364 5.364 14 C -0.001 4.001 15 C -0.107 4.107 16 C 0.002 3.998 17 C -0.167 4.167 18 C 0.029 3.971 19 N -0.331 5.331 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.040 3.960 29 C -0.154 4.154 30 C -0.075 4.075 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.031 0.969 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.042 0.958 49 H 0.103 0.897 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.036 -5.137 -23.832 26.761 hybrid contribution 0.061 0.878 -0.124 0.889 sum -10.975 -4.259 -23.956 26.692 Atomic orbital electron populations 1.21813 0.94701 1.02002 1.01849 1.21273 0.95810 0.99794 0.94382 0.90913 1.21628 0.93259 1.01518 0.98298 1.20216 0.95525 1.02116 0.90664 1.21141 0.85011 1.07754 0.98190 1.43015 1.08140 1.50632 1.07075 0.71218 1.73950 1.24655 1.19226 0.91236 1.21529 0.90096 1.09003 0.94820 1.16314 0.83006 0.76921 0.82328 1.90773 1.21520 1.53365 1.75582 1.49562 1.08764 1.67507 1.10556 1.22959 0.78707 1.01282 0.97102 1.22194 0.94960 0.98943 0.94566 1.22885 0.95318 1.00834 0.80721 1.22761 0.96846 0.98102 0.99020 1.21974 1.03148 0.81520 0.90473 1.44609 1.62816 1.03550 1.22082 1.19025 1.27422 0.85451 1.02979 0.90617 1.24767 1.01132 0.97066 0.97705 1.69783 1.46107 1.21203 1.20094 0.86154 0.78655 0.82054 0.78649 1.21250 1.21582 1.21212 1.20719 0.94786 0.90458 0.90019 1.19869 0.97279 1.07592 0.90623 1.20038 0.88428 1.01066 0.97932 0.92537 0.92275 0.92703 0.90871 0.91316 0.89917 0.90335 0.89856 0.89780 0.90008 0.89705 0.91864 0.91372 0.87594 0.96859 0.93710 0.95379 0.95807 0.89723 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.16 37.16 0.34 -0.65 16 2 C -0.09 -0.74 2.70 -90.32 -0.24 -0.99 16 3 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 4 C -0.11 -0.66 5.19 -26.47 -0.14 -0.80 16 5 C -0.05 -0.27 6.31 -27.67 -0.17 -0.45 16 6 C 0.01 0.06 7.12 -82.45 -0.59 -0.53 16 7 N -0.38 -3.58 6.82 33.42 0.23 -3.36 16 8 H 0.44 2.49 8.96 -190.21 -1.71 0.78 16 9 N -0.25 -3.38 10.82 33.28 0.36 -3.02 16 10 C 0.01 0.08 7.09 -82.98 -0.59 -0.51 16 11 C 0.63 10.99 8.07 -12.39 -0.10 10.89 16 12 O -0.54 -10.59 16.58 5.30 0.09 -10.50 16 13 N -0.63 -10.46 3.70 -186.63 -0.69 -11.15 16 14 C 0.12 1.83 7.17 -7.45 -0.05 1.77 16 15 C -0.11 -1.83 1.05 -155.11 -0.16 -2.00 16 16 C 0.12 2.06 7.89 -7.60 -0.06 2.00 16 17 C -0.13 -2.30 6.49 -25.20 -0.16 -2.46 16 18 C 0.15 3.66 5.90 -2.31 -0.01 3.65 16 19 N -0.60 -15.59 3.41 -170.37 -0.58 -16.17 16 20 C -0.22 -6.22 10.28 -15.06 -0.15 -6.37 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -26.88 10.09 55.49 0.56 -26.32 16 24 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.17 3.58 6.78 -3.61 -0.02 3.55 16 29 C -0.14 -1.82 5.99 -104.88 -0.63 -2.44 16 30 C -0.04 -0.41 4.84 -27.79 -0.13 -0.55 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.32 8.11 -51.93 -0.42 -0.10 16 35 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.27 7.50 -51.92 -0.39 0.88 16 40 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 41 H 0.08 1.22 8.04 -51.93 -0.42 0.81 16 42 H 0.06 0.98 7.98 -51.93 -0.41 0.56 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.11 2.84 5.89 -51.93 -0.31 2.53 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 48 H 0.02 0.54 7.92 -51.93 -0.41 0.13 16 49 H 0.08 1.11 7.68 -51.93 -0.40 0.71 16 50 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -33.97 393.66 -11.60 -45.57 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -9.49 Total: -1.94 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.98 Total: 3.70 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.12 Total: -60.02 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.97 -11.60 -45.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073097284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.022 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds