Wall clock time and date at job start Wed Apr 1 2020 02:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46365 * 2 1 4 4 C 1.53103 * 109.46879 * 240.00885 * 2 1 3 5 5 C 1.53401 * 109.64848 * 169.93821 * 4 2 1 6 6 C 1.50720 * 108.33216 * 50.01692 * 5 4 2 7 7 N 1.34313 * 128.90363 * 163.25237 * 6 5 4 8 8 H 0.97001 * 124.97727 * 0.18925 * 7 6 5 9 9 N 1.28842 * 110.04063 * 180.46243 * 7 6 5 10 10 C 1.32210 * 110.15063 * 359.53478 * 9 7 6 11 11 C 1.47710 * 126.68132 * 180.13646 * 10 9 7 12 12 O 1.21570 * 120.00196 * 180.28362 * 11 10 9 13 13 N 1.34775 * 119.99662 * 0.28245 * 11 10 9 14 14 C 1.47355 * 135.88148 * 359.63282 * 13 11 10 15 15 C 1.52259 * 87.47553 * 154.22252 * 14 13 11 16 16 C 1.47355 * 135.87660 * 179.97438 * 13 11 10 17 17 C 1.53719 * 116.39458 * 142.36618 * 15 14 13 18 18 C 1.55184 * 101.38265 * 165.09586 * 17 15 14 19 19 N 1.47546 * 105.03483 * 324.51084 * 18 17 15 20 20 C 1.36943 * 125.66038 * 203.87144 * 19 18 17 21 21 H 1.07998 * 119.99684 * 180.02562 * 20 19 18 22 22 C 1.38809 * 119.99834 * 0.02562 * 20 19 18 23 23 N 1.31622 * 120.00168 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00032 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47034 * 60.00207 * 24 22 20 26 26 H 1.48502 * 109.47148 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46773 * 300.00155 * 24 22 20 28 28 C 1.47402 * 108.68323 * 23.89330 * 19 18 17 29 29 C 1.35580 * 123.87666 * 343.36972 * 6 5 4 30 30 C 1.50382 * 124.62083 * 359.74088 * 29 6 5 31 31 H 1.09003 * 109.46722 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47214 * 299.99041 * 1 2 3 33 33 H 1.09005 * 109.46736 * 59.99011 * 1 2 3 34 34 H 1.09006 * 109.44039 * 49.88872 * 4 2 1 35 35 H 1.08996 * 109.41189 * 289.97967 * 4 2 1 36 36 H 1.08993 * 109.69407 * 290.31219 * 5 4 2 37 37 H 1.08994 * 109.72362 * 169.74542 * 5 4 2 38 38 H 1.09000 * 113.53329 * 268.84711 * 14 13 11 39 39 H 1.09009 * 113.53045 * 39.49233 * 14 13 11 40 40 H 1.08990 * 113.53605 * 320.50340 * 16 13 11 41 41 H 1.09003 * 113.53058 * 91.15506 * 16 13 11 42 42 H 1.08996 * 111.04110 * 283.12436 * 17 15 14 43 43 H 1.09000 * 111.03773 * 47.07579 * 17 15 14 44 44 H 1.09001 * 110.32701 * 205.61891 * 18 17 15 45 45 H 1.09004 * 110.41256 * 83.44214 * 18 17 15 46 46 H 0.97001 * 120.00567 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.99457 * 238.51974 * 28 19 18 48 48 H 1.09005 * 109.99637 * 117.19295 * 28 19 18 49 49 H 1.09005 * 109.69866 * 224.06067 * 30 29 6 50 50 H 1.08994 * 109.73801 * 103.47750 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0403 -0.7216 -1.2502 5 6 3.5533 -0.5091 -1.3870 6 6 4.1999 -0.8408 -0.0665 7 7 5.4917 -1.0938 0.2002 8 1 6.2058 -1.0919 -0.4564 9 7 5.6426 -1.3448 1.4549 10 6 4.4798 -1.2633 2.0787 11 6 4.2343 -1.4788 3.5192 12 8 3.1082 -1.3771 3.9658 13 7 5.2588 -1.7882 4.3385 14 6 6.7088 -2.0006 4.1852 15 6 6.8544 -1.5955 5.6457 16 6 5.4158 -2.0675 5.7768 17 6 7.9053 -2.3610 6.4657 18 6 8.0434 -1.4494 7.7139 19 7 7.8916 -0.0739 7.2020 20 6 8.3759 1.0586 7.8004 21 1 8.2106 2.0233 7.3439 22 6 9.0791 0.9666 8.9936 23 7 9.2800 -0.2091 9.5502 24 14 9.7404 2.5115 9.8095 25 1 8.6134 3.4248 10.1269 26 1 10.4480 2.1452 11.0627 27 1 10.6850 3.1923 8.8879 28 6 7.1316 -0.1211 5.9399 29 6 3.5222 -0.9370 1.1038 30 6 2.0412 -0.7230 1.2535 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 -0.3633 0.5140 -0.8900 34 1 1.5368 -0.3220 -2.1306 35 1 1.8299 -1.7876 -1.1645 36 1 3.7565 0.5304 -1.6444 37 1 3.9480 -1.1637 -2.1639 38 1 6.9787 -3.0389 3.9926 39 1 7.1795 -1.3052 3.4900 40 1 4.8044 -1.4282 6.4135 41 1 5.3257 -3.1245 6.0272 42 1 7.5413 -3.3506 6.7421 43 1 8.8493 -2.4299 5.9251 44 1 9.0252 -1.5776 8.1697 45 1 7.2588 -1.6732 8.4368 46 1 9.7718 -0.2735 10.3838 47 1 7.7208 0.3155 5.1335 48 1 6.1917 0.4200 6.0503 49 1 1.8455 -0.1127 2.1353 50 1 1.5385 -1.6849 1.3536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073097284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:36 Heat of formation + Delta-G solvation = 72.866642 kcal Electronic energy + Delta-G solvation = -30415.369887 eV Core-core repulsion = 26444.712982 eV Total energy + Delta-G solvation = -3970.656905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.87452 -41.84665 -39.46752 -38.45680 -37.32419 -34.18900 -33.71261 -32.51246 -31.59682 -30.68521 -29.71018 -27.84259 -27.35624 -27.21748 -25.68462 -24.28187 -24.09404 -22.21154 -22.09545 -20.43531 -19.97333 -19.50466 -18.85600 -18.68940 -17.81277 -17.13966 -17.08745 -16.73294 -16.33268 -15.99364 -15.70162 -15.55031 -15.20715 -14.81589 -14.54575 -14.38171 -14.16956 -14.12943 -13.85174 -13.80418 -13.68522 -13.45252 -13.16106 -12.97841 -12.90101 -12.73967 -12.54362 -12.45171 -12.06233 -11.96957 -11.93160 -11.78721 -11.69324 -11.66327 -11.45572 -11.34757 -11.20426 -10.90900 -10.71819 -10.41273 -9.77211 -9.61910 -8.89421 -7.77217 -5.21661 0.46192 1.06736 1.45672 1.48976 1.55375 1.63304 2.02524 2.28059 2.48857 3.16666 3.24200 3.39080 3.58722 3.60485 3.68586 3.77592 3.91525 4.03660 4.13391 4.15245 4.17587 4.25838 4.41561 4.50339 4.56394 4.59405 4.61633 4.66995 4.72643 4.79854 4.81403 4.86288 4.93180 4.93610 4.98789 5.02757 5.08347 5.10470 5.13958 5.20372 5.21032 5.31490 5.44446 5.45085 5.47833 5.55870 5.68588 5.84086 6.12813 6.32644 6.60643 6.75651 7.06955 7.11686 7.77360 8.41591 9.24058 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.002306 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.370882 B =12141.731255 C =12329.747035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.106 4.106 5 C -0.044 4.044 6 C 0.030 3.970 7 N -0.356 5.356 8 H 0.463 0.537 9 N -0.266 5.266 10 C -0.028 4.028 11 C 0.618 3.382 12 O -0.574 6.574 13 N -0.635 5.635 14 C 0.140 3.860 15 C -0.100 4.100 16 C 0.123 3.877 17 C -0.106 4.106 18 C 0.153 3.847 19 N -0.625 5.625 20 C -0.243 4.243 21 H 0.074 0.926 22 C -0.063 4.063 23 N -0.945 5.945 24 Si 0.979 3.021 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.166 3.834 29 C -0.173 4.173 30 C -0.034 4.034 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.076 0.924 45 H -0.013 1.013 46 H 0.248 0.752 47 H 0.029 0.971 48 H 0.003 0.997 49 H 0.051 0.949 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 -5.617 -28.089 30.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.144 4.144 5 C -0.083 4.083 6 C -0.099 4.099 7 N -0.071 5.071 8 H 0.311 0.689 9 N -0.104 5.104 10 C -0.186 4.186 11 C 0.408 3.592 12 O -0.452 6.452 13 N -0.368 5.368 14 C 0.018 3.982 15 C -0.101 4.101 16 C 0.001 3.999 17 C -0.145 4.145 18 C 0.029 3.971 19 N -0.352 5.352 20 C -0.372 4.372 21 H 0.092 0.908 22 C -0.256 4.256 23 N -0.595 5.595 24 Si 0.807 3.193 25 H -0.209 1.209 26 H -0.215 1.215 27 H -0.201 1.201 28 C 0.041 3.959 29 C -0.183 4.183 30 C -0.073 4.073 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.005 0.995 46 H 0.058 0.942 47 H 0.047 0.953 48 H 0.021 0.979 49 H 0.070 0.930 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.562 -5.663 -27.584 30.075 hybrid contribution -0.101 1.087 1.012 1.489 sum -10.663 -4.576 -26.573 28.996 Atomic orbital electron populations 1.21806 0.94001 1.02197 1.02204 1.21250 0.96415 0.99382 0.93768 0.91134 1.21644 0.93656 1.01163 0.97945 1.20459 0.94880 1.03943 0.88987 1.21662 0.84446 1.04898 0.98856 1.43118 1.08977 1.48686 1.06363 0.68896 1.73836 1.23953 1.19887 0.92704 1.21328 0.91739 1.11604 0.93924 1.16759 0.82620 0.76271 0.83550 1.90736 1.22927 1.54985 1.76579 1.49630 1.09465 1.67314 1.10379 1.22964 0.77424 1.03131 0.94639 1.21980 0.95367 0.95911 0.96843 1.22951 0.94092 1.02028 0.80797 1.22594 0.97758 0.98265 0.95874 1.21816 1.00386 0.82197 0.92749 1.44916 1.63171 1.03780 1.23307 1.19356 1.27741 0.86454 1.03644 0.90846 1.25592 1.01602 1.00094 0.98304 1.70030 1.46492 1.22880 1.20060 0.85144 0.77993 0.78588 0.77534 1.20927 1.21542 1.20141 1.20761 0.93186 0.93513 0.88456 1.20151 0.97779 1.08987 0.91422 1.19983 0.88342 1.00371 0.98576 0.92440 0.93552 0.90708 0.88120 0.91651 0.88011 0.87196 0.86443 0.89646 0.92582 0.86672 0.88398 0.90090 0.90647 0.99489 0.94179 0.95258 0.97899 0.93025 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.16 71.98 0.66 -1.15 16 2 C -0.09 -1.31 2.70 -10.60 -0.03 -1.34 16 3 H 0.07 1.06 8.12 -2.38 -0.02 1.04 16 4 C -0.11 -0.93 5.19 30.76 0.16 -0.77 16 5 C -0.04 -0.33 6.31 29.99 0.19 -0.14 16 6 C 0.03 0.49 7.12 41.57 0.30 0.79 16 7 N -0.36 -5.81 6.82 -48.17 -0.33 -6.14 16 8 H 0.46 3.50 8.96 -219.80 -1.97 1.53 16 9 N -0.27 -6.66 10.82 -48.62 -0.53 -7.19 16 10 C -0.03 -0.85 7.09 42.14 0.30 -0.55 16 11 C 0.62 22.36 8.07 86.75 0.70 23.06 16 12 O -0.57 -24.02 16.58 -3.94 -0.07 -24.09 16 13 N -0.63 -20.99 3.70 -862.64 -3.19 -24.18 16 14 C 0.14 3.92 7.17 83.71 0.60 4.52 16 15 C -0.10 -3.40 1.05 -52.56 -0.05 -3.46 16 16 C 0.12 4.07 7.89 83.61 0.66 4.73 16 17 C -0.11 -3.65 6.49 31.59 0.21 -3.45 16 18 C 0.15 7.49 5.90 86.93 0.51 8.00 16 19 N -0.63 -33.28 3.41 -692.94 -2.36 -35.64 16 20 C -0.24 -14.12 10.28 84.03 0.86 -13.25 16 21 H 0.07 4.16 7.83 -2.91 -0.02 4.13 16 22 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 23 N -0.95 -56.60 10.09 21.65 0.22 -56.38 16 24 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 C 0.17 7.34 6.78 86.17 0.58 7.92 16 29 C -0.17 -4.33 5.99 -20.03 -0.12 -4.45 16 30 C -0.03 -0.80 4.84 29.91 0.14 -0.66 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.10 0.41 8.11 -2.38 -0.02 0.39 16 35 H 0.06 0.65 8.11 -2.39 -0.02 0.63 16 36 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.09 2.41 7.50 -2.38 -0.02 2.39 16 40 H 0.06 2.13 8.06 -2.39 -0.02 2.11 16 41 H 0.12 3.11 8.04 -2.39 -0.02 3.09 16 42 H 0.10 2.73 7.98 -2.39 -0.02 2.71 16 43 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.08 4.17 5.89 -2.39 -0.01 4.16 16 45 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 46 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.03 1.28 8.07 -2.39 -0.02 1.26 16 48 H 0.00 0.15 7.92 -2.38 -0.02 0.13 16 49 H 0.05 1.50 7.68 -2.38 -0.02 1.48 16 50 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 Total: -1.00 -79.19 393.66 0.89 -78.30 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -1.02 Total: 10.10 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 6.14 Total: 16.61 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -6.19 Total: -129.52 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.09 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -79.19 0.89 -78.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073097284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.169 kcal (2) G-P(sol) polarization free energy of solvation -79.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds