Wall clock time and date at job start Wed Apr 1 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 109.52455 * 2 1 4 4 C 1.53161 * 109.58996 * 239.82154 * 2 1 3 5 5 C 1.53219 * 109.54616 * 170.83292 * 4 2 1 6 6 N 1.46682 * 108.84632 * 50.62321 * 5 4 2 7 7 N 1.39627 * 127.22846 * 162.58064 * 6 5 4 8 8 C 1.30610 * 108.86958 * 180.02562 * 7 6 5 9 9 C 1.41459 * 108.07285 * 359.96875 * 8 7 6 10 10 C 1.47431 * 126.48989 * 179.97438 * 9 8 7 11 11 O 1.21595 * 120.00413 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99635 * 359.97438 * 10 9 8 13 13 C 1.47390 * 135.85489 * 359.62363 * 12 10 9 14 14 C 1.52075 * 87.40926 * 154.39204 * 13 12 10 15 15 C 1.47391 * 135.85287 * 180.02562 * 12 10 9 16 16 C 1.53512 * 117.21186 * 267.28250 * 14 13 12 17 17 C 1.54639 * 102.70192 * 262.93264 * 16 14 13 18 18 N 1.47143 * 107.37501 * 339.38208 * 17 16 14 19 19 C 1.36940 * 125.57746 * 179.13377 * 18 17 16 20 20 H 1.08008 * 119.99901 * 174.73174 * 19 18 17 21 21 C 1.38808 * 120.00395 * 354.73311 * 19 18 17 22 22 N 1.31624 * 119.99788 * 7.05606 * 21 19 18 23 23 Si 1.86792 * 120.00386 * 187.05396 * 21 19 18 24 24 H 1.48499 * 109.47288 * 94.98739 * 23 21 19 25 25 H 1.48505 * 109.47193 * 214.99057 * 23 21 19 26 26 H 1.48495 * 109.47147 * 334.98437 * 23 21 19 27 27 C 1.47757 * 108.84339 * 359.09305 * 18 17 16 28 28 C 1.34661 * 124.45200 * 342.64321 * 6 5 4 29 29 C 1.50806 * 124.52367 * 359.82945 * 28 6 5 30 30 H 1.09000 * 109.47191 * 299.85527 * 1 2 3 31 31 H 1.08996 * 109.47074 * 59.85288 * 1 2 3 32 32 H 1.09004 * 109.46583 * 179.85819 * 1 2 3 33 33 H 1.08997 * 109.45386 * 290.85116 * 4 2 1 34 34 H 1.08998 * 109.46053 * 50.80518 * 4 2 1 35 35 H 1.09000 * 109.57475 * 170.43482 * 5 4 2 36 36 H 1.09000 * 109.57188 * 290.68258 * 5 4 2 37 37 H 1.08000 * 125.95705 * 179.97438 * 8 7 6 38 38 H 1.08996 * 113.54895 * 269.00296 * 13 12 10 39 39 H 1.09005 * 113.53818 * 39.68077 * 13 12 10 40 40 H 1.09001 * 113.53857 * 320.31362 * 15 12 10 41 41 H 1.08992 * 113.54997 * 90.99358 * 15 12 10 42 42 H 1.08999 * 110.76459 * 21.22854 * 16 14 13 43 43 H 1.08992 * 110.76546 * 144.63121 * 16 14 13 44 44 H 1.08997 * 109.86882 * 98.83553 * 17 16 14 45 45 H 1.09002 * 109.85876 * 219.80601 * 17 16 14 46 46 H 0.96995 * 120.00404 * 180.02562 * 22 21 19 47 47 H 1.08998 * 110.40380 * 263.50222 * 27 18 17 48 48 H 1.08999 * 110.40495 * 141.07111 * 27 18 17 49 49 H 1.09000 * 109.71846 * 224.68766 * 29 28 6 50 50 H 1.09006 * 109.71530 * 104.09046 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0435 -0.7254 -1.2474 5 6 3.5584 -0.5290 -1.3674 6 7 4.1837 -0.8726 -0.0857 7 7 5.5305 -1.1576 0.1476 8 6 5.6937 -1.4162 1.4173 9 6 4.4353 -1.3034 2.0535 10 6 4.1551 -1.5118 3.4859 11 8 3.0225 -1.3827 3.9090 12 7 5.1546 -1.8453 4.3264 13 6 6.6023 -2.0927 4.2027 14 6 6.7252 -1.6949 5.6654 15 6 5.2741 -2.1284 5.7679 16 6 7.0363 -0.2226 5.9686 17 6 8.5686 -0.2346 6.1764 18 7 8.9585 -1.6180 6.4916 19 6 10.2357 -2.0516 6.7280 20 1 10.4114 -3.0720 7.0353 21 6 11.3046 -1.1797 6.5728 22 7 11.0842 0.0959 6.3348 23 14 13.0558 -1.8167 6.7017 24 1 13.5707 -2.1277 5.3440 25 1 13.9141 -0.7812 7.3315 26 1 13.0750 -3.0474 7.5323 27 6 7.7462 -2.4625 6.5123 28 6 3.5227 -0.9652 1.0838 29 6 2.0430 -0.7262 1.2506 30 1 -0.3633 0.5116 0.8913 31 1 -0.3633 0.5161 -0.8886 32 1 -0.3633 -1.0277 -0.0025 33 1 1.8206 -1.7892 -1.1663 34 1 1.5534 -0.3183 -2.1318 35 1 3.9499 -1.1783 -2.1504 36 1 3.7734 0.5108 -1.6137 37 1 6.6267 -1.6716 1.8977 38 1 6.8510 -3.1369 4.0131 39 1 7.1043 -1.4073 3.5197 40 1 4.6669 -1.4727 6.3921 41 1 5.1510 -3.1824 6.0164 42 1 6.7658 0.4114 5.1242 43 1 6.5259 0.1013 6.8756 44 1 9.0686 0.0926 5.2648 45 1 8.8355 0.4249 7.0023 46 1 11.8310 0.7052 6.2260 47 1 7.3820 -2.5795 7.5329 48 1 7.9536 -3.4359 6.0678 49 1 1.8672 -0.1095 2.1320 50 1 1.5265 -1.6798 1.3601 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073155062.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:57 Heat of formation + Delta-G solvation = 82.242813 kcal Electronic energy + Delta-G solvation = -30576.739091 eV Core-core repulsion = 26606.488768 eV Total energy + Delta-G solvation = -3970.250323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.82067 -41.71157 -39.28517 -38.15970 -37.24250 -34.15074 -33.95066 -32.17191 -31.44784 -30.59694 -29.57620 -27.89569 -27.24462 -27.07573 -25.53784 -24.73752 -23.08076 -22.37236 -22.08833 -20.57043 -20.01439 -19.59624 -18.56599 -18.29671 -17.18300 -16.98375 -16.71696 -16.53103 -16.33961 -16.01484 -15.84188 -15.56218 -15.40927 -14.90314 -14.79847 -14.63181 -14.17484 -14.12991 -13.81928 -13.68103 -13.61614 -13.34707 -13.27123 -13.11049 -12.83823 -12.76380 -12.59186 -12.33800 -12.18763 -11.98722 -11.95220 -11.84066 -11.77946 -11.68996 -11.64327 -11.53149 -11.16111 -10.80990 -10.62640 -10.41254 -9.91202 -9.49919 -8.82140 -7.80304 -5.13569 0.44931 1.05713 1.30281 1.50146 1.51366 1.59947 1.90090 2.38948 2.54198 3.22954 3.30384 3.39127 3.44259 3.59229 3.61081 3.64417 3.73794 3.86628 3.95853 4.10727 4.16836 4.22517 4.25353 4.29597 4.42173 4.53235 4.56808 4.58060 4.67355 4.68077 4.72417 4.73109 4.80647 4.86483 4.89900 4.91281 4.97998 5.04311 5.07987 5.12449 5.21050 5.23514 5.27966 5.36453 5.41723 5.53866 5.70650 5.82662 5.84659 6.24869 6.47556 6.74231 7.15636 7.19980 7.83691 8.48582 9.30764 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019688 B = 0.002447 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.837484 B =11442.052139 C =12283.548654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.077 0.923 4 C -0.125 4.125 5 C 0.117 3.883 6 N -0.357 5.357 7 N -0.320 5.320 8 C 0.076 3.924 9 C -0.314 4.314 10 C 0.621 3.379 11 O -0.584 6.584 12 N -0.639 5.639 13 C 0.120 3.880 14 C -0.098 4.098 15 C 0.131 3.869 16 C -0.102 4.102 17 C 0.190 3.810 18 N -0.625 5.625 19 C -0.233 4.233 20 H 0.087 0.913 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.973 3.027 24 H -0.289 1.289 25 H -0.300 1.300 26 H -0.266 1.266 27 C 0.152 3.848 28 C 0.158 3.842 29 C -0.051 4.051 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.198 0.802 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.013 0.987 45 H 0.002 0.998 46 H 0.244 0.756 47 H 0.036 0.964 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.151 -2.740 -16.063 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.163 4.163 5 C -0.002 4.002 6 N -0.137 5.137 7 N -0.139 5.139 8 C -0.111 4.111 9 C -0.328 4.328 10 C 0.413 3.587 11 O -0.466 6.466 12 N -0.373 5.373 13 C -0.002 4.002 14 C -0.100 4.100 15 C 0.009 3.991 16 C -0.140 4.140 17 C 0.065 3.935 18 N -0.351 5.351 19 C -0.362 4.362 20 H 0.105 0.895 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.802 3.198 24 H -0.216 1.216 25 H -0.227 1.227 26 H -0.191 1.191 27 C 0.027 3.973 28 C 0.024 3.976 29 C -0.090 4.090 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.214 0.786 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.031 0.969 45 H 0.020 0.980 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.077 0.923 49 H 0.107 0.893 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.165 -2.410 -17.310 28.227 hybrid contribution 1.408 0.046 1.184 1.840 sum -20.758 -2.364 -16.127 26.392 Atomic orbital electron populations 1.21763 0.92241 1.02828 1.02978 1.21336 0.98027 0.99414 0.92705 0.90483 1.22097 0.91282 1.02588 1.00309 1.22376 0.93798 1.03376 0.80612 1.48996 1.04957 1.51385 1.08358 1.77078 0.95166 1.23753 1.17920 1.24581 0.98734 0.97029 0.90731 1.19807 0.94527 1.24343 0.94127 1.16826 0.82466 0.75475 0.83907 1.90690 1.21708 1.55773 1.78424 1.49475 1.09181 1.68039 1.10563 1.23041 0.78562 1.02341 0.96235 1.21994 0.94981 0.96847 0.96153 1.22776 0.93165 1.02388 0.80806 1.22241 0.96204 0.94384 1.01157 1.20908 0.89888 0.85817 0.96921 1.44830 1.02419 1.04968 1.82919 1.19462 0.82574 0.96318 1.37862 0.89523 1.25616 1.01684 0.95917 1.02817 1.70198 1.29951 1.02958 1.57014 0.85127 0.80037 0.77219 0.77398 1.21598 1.22742 1.19057 1.21317 0.85298 0.93860 0.96860 1.21748 0.96453 0.93987 0.85422 1.20707 0.85039 1.02876 1.00366 0.92521 0.90413 0.91892 0.90452 0.85422 0.87353 0.88188 0.78570 0.87348 0.90562 0.90241 0.87271 0.91587 0.90746 0.96890 0.98000 0.94639 0.94642 0.92288 0.89320 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.18 71.98 0.66 -0.45 16 2 C -0.10 -1.07 2.75 -10.59 -0.03 -1.10 16 3 H 0.08 0.91 8.12 -2.38 -0.02 0.89 16 4 C -0.12 -0.97 5.23 30.72 0.16 -0.81 16 5 C 0.12 1.47 7.27 86.42 0.63 2.10 16 6 N -0.36 -8.13 4.01 -332.37 -1.33 -9.46 16 7 N -0.32 -9.05 12.54 -56.08 -0.70 -9.75 16 8 C 0.08 2.17 11.15 85.67 0.95 3.13 16 9 C -0.31 -9.22 6.12 -20.26 -0.12 -9.34 16 10 C 0.62 19.96 8.06 86.66 0.70 20.66 16 11 O -0.58 -21.12 16.19 -4.01 -0.06 -21.19 16 12 N -0.64 -18.68 3.70 -863.83 -3.19 -21.87 16 13 C 0.12 3.39 6.43 83.76 0.54 3.92 16 14 C -0.10 -3.06 1.06 -52.62 -0.06 -3.11 16 15 C 0.13 3.47 8.03 83.67 0.67 4.15 16 16 C -0.10 -3.70 6.41 31.32 0.20 -3.50 16 17 C 0.19 9.21 5.40 86.81 0.47 9.68 16 18 N -0.62 -30.56 3.41 -693.43 -2.36 -32.93 16 19 C -0.23 -12.60 10.26 84.03 0.86 -11.73 16 20 H 0.09 4.42 7.84 -2.91 -0.02 4.40 16 21 C -0.07 -3.79 5.48 84.86 0.46 -3.33 16 22 N -0.95 -57.14 10.35 21.65 0.22 -56.91 16 23 Si 0.97 45.32 29.56 68.60 2.03 47.35 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 C 0.15 5.54 6.70 86.23 0.58 6.11 16 28 C 0.16 3.92 6.66 41.96 0.28 4.20 16 29 C -0.05 -0.97 4.68 30.03 0.14 -0.83 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.35 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 34 H 0.13 0.22 8.12 -2.39 -0.02 0.20 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.20 5.15 5.23 -2.91 -0.02 5.14 16 38 H 0.11 2.64 8.06 -2.39 -0.02 2.62 16 39 H 0.08 2.25 6.21 -2.38 -0.01 2.23 16 40 H 0.08 2.12 8.13 -2.39 -0.02 2.10 16 41 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 43 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.01 0.71 7.30 -2.39 -0.02 0.69 16 45 H 0.00 0.10 7.60 -2.39 -0.02 0.08 16 46 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 47 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 1.98 8.00 -2.39 -0.02 1.97 16 49 H 0.09 2.01 7.47 -2.39 -0.02 1.99 16 50 H 0.10 1.79 8.11 -2.38 -0.02 1.77 16 Total: -1.00 -74.51 391.78 2.63 -71.88 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.93 Total: 13.14 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 7.10 Total: 19.74 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -7.37 Total: -130.93 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.51 2.63 -71.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073155062.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.122 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds