Wall clock time and date at job start Wed Apr 1 2020 03:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47126 * 2 1 4 4 N 1.28441 * 125.18939 * 266.53846 * 3 2 1 5 5 C 1.30860 * 110.92867 * 179.81976 * 4 3 2 6 6 C 1.50702 * 126.07458 * 180.18243 * 5 4 3 7 7 C 1.52995 * 117.50327 * 164.04687 * 6 5 4 8 8 C 1.53000 * 117.49926 * 95.38012 * 6 5 4 9 9 C 1.39675 * 107.85924 * 0.43568 * 5 4 3 10 10 C 1.36598 * 125.18966 * 86.84029 * 3 2 1 11 11 C 1.47160 * 126.88461 * 359.97438 * 10 3 2 12 12 O 1.21625 * 120.00125 * 353.55399 * 11 10 3 13 13 N 1.34780 * 119.99899 * 173.56007 * 11 10 3 14 14 C 1.47399 * 125.58709 * 354.63692 * 13 11 10 15 15 C 1.54852 * 104.81110 * 204.61140 * 14 13 11 16 16 C 1.55123 * 101.77779 * 322.82308 * 15 14 13 17 17 H 1.09004 * 113.46206 * 159.24402 * 16 15 14 18 18 C 1.54044 * 108.25987 * 286.08515 * 16 15 14 19 19 N 1.46701 * 106.83097 * 135.80395 * 18 16 15 20 20 C 1.36937 * 125.32050 * 161.84344 * 19 18 16 21 21 H 1.07997 * 120.00144 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99608 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00091 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99627 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47310 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47024 * 120.00083 * 24 22 20 27 27 H 1.48503 * 109.46945 * 239.99995 * 24 22 20 28 28 C 1.46634 * 109.35479 * 341.82824 * 19 18 16 29 29 C 1.46732 * 125.59048 * 174.34164 * 13 11 10 30 30 H 1.09006 * 111.32490 * 56.11478 * 29 13 11 31 31 H 1.09001 * 109.47355 * 295.27938 * 1 2 3 32 32 H 1.09007 * 109.47098 * 55.27824 * 1 2 3 33 33 H 1.09002 * 109.47216 * 175.27849 * 1 2 3 34 34 H 1.09002 * 109.47107 * 119.99797 * 2 1 3 35 35 H 1.08998 * 109.47268 * 239.99931 * 2 1 3 36 36 H 1.08998 * 115.54604 * 309.72021 * 6 5 4 37 37 H 1.09003 * 117.49658 * 359.97438 * 7 6 5 38 38 H 1.08997 * 117.50110 * 145.02515 * 7 6 5 39 39 H 1.08998 * 117.49902 * 214.98434 * 8 6 5 40 40 H 1.08999 * 117.49972 * 359.97438 * 8 6 5 41 41 H 1.07999 * 127.32273 * 179.72477 * 9 5 4 42 42 H 1.08997 * 110.37343 * 323.44943 * 14 13 11 43 43 H 1.09001 * 110.36651 * 85.78600 * 14 13 11 44 44 H 1.09009 * 110.96570 * 80.93949 * 15 14 13 45 45 H 1.08996 * 110.97285 * 204.69879 * 15 14 13 46 46 H 1.08996 * 109.99168 * 255.15443 * 18 16 15 47 47 H 1.09005 * 109.98326 * 16.42473 * 18 16 15 48 48 H 0.97003 * 120.00117 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.75633 * 120.92263 * 28 19 18 50 50 H 1.09002 * 109.75563 * 241.62721 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3248 2.0580 -1.0478 5 6 2.7256 3.2615 -0.7262 6 6 3.1622 4.3375 -1.6867 7 6 3.2345 5.7709 -1.1566 8 6 2.1151 5.3659 -2.1191 9 6 2.6824 3.3698 0.6656 10 6 2.2227 2.1439 1.1146 11 6 1.9985 1.7428 2.5127 12 8 1.4790 0.6717 2.7622 13 7 2.3686 2.5624 3.5165 14 6 3.1044 3.8302 3.3618 15 6 3.8155 4.0436 4.7207 16 6 2.7530 3.5164 5.7204 17 1 3.1680 3.2420 6.6903 18 6 1.6186 4.5546 5.8111 19 7 0.3559 3.8091 5.7659 20 6 -0.8626 4.2909 6.1639 21 1 -0.9461 5.2963 6.5492 22 6 -1.9903 3.4864 6.0731 23 7 -1.8882 2.2606 5.6050 24 14 -3.6526 4.1439 6.6153 25 1 -3.4990 5.5391 7.0999 26 1 -4.5933 4.1191 5.4666 27 1 -4.1868 3.2958 7.7111 28 6 0.6025 2.4677 5.2276 29 6 2.0999 2.3420 4.9421 30 1 2.4903 1.3802 5.2750 31 1 -0.3634 0.4388 0.9292 32 1 -0.3634 0.5854 -0.8447 33 1 -0.3634 -1.0242 -0.0846 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.9057 4.0357 -2.4244 37 1 2.9658 5.9357 -0.1131 38 1 4.0252 6.4122 -1.5458 39 1 2.1700 5.7409 -3.1410 40 1 1.1103 5.2639 -1.7091 41 1 2.9509 4.2276 1.2643 42 1 3.8369 3.7482 2.5589 43 1 2.4124 4.6486 3.1632 44 1 4.7312 3.4549 4.7784 45 1 4.0214 5.1002 4.8916 46 1 1.6924 5.1061 6.7484 47 1 1.6757 5.2434 4.9682 48 1 -2.6763 1.6986 5.5412 49 1 0.3001 1.7165 5.9573 50 1 0.0395 2.3320 4.3042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075927362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:53 Heat of formation + Delta-G solvation = 115.464655 kcal Electronic energy + Delta-G solvation = -31766.456647 eV Core-core repulsion = 27797.646930 eV Total energy + Delta-G solvation = -3968.809716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.53526 -40.11597 -37.84361 -37.22548 -34.99715 -34.09428 -32.38556 -30.93920 -30.81995 -29.60933 -28.61828 -26.53553 -24.78490 -24.55110 -23.91668 -22.61306 -22.35657 -21.61825 -20.85886 -20.12518 -19.21615 -18.58567 -17.19196 -16.77327 -16.40034 -16.05637 -15.87898 -15.26072 -14.96087 -14.64724 -14.43729 -14.33392 -14.01303 -13.77710 -13.38431 -13.24067 -12.84344 -12.74588 -12.53839 -12.18888 -12.06655 -11.94408 -11.89599 -11.60827 -11.59809 -11.25643 -11.10074 -11.02469 -10.95200 -10.75921 -10.68036 -10.50839 -10.29666 -10.21265 -10.13252 -9.89122 -9.71382 -9.64294 -8.97253 -8.76505 -8.60185 -8.23899 -6.81921 -5.68658 -3.04253 1.44641 2.41021 2.53246 3.28163 3.40331 3.45298 3.47710 3.48420 3.74257 4.30806 4.47669 4.51346 4.73431 4.75028 4.81550 4.86545 4.98781 5.04766 5.09942 5.18728 5.27822 5.28875 5.46319 5.46928 5.49767 5.52446 5.58439 5.67609 5.71077 5.71736 5.72952 5.80800 5.84946 5.90953 5.99365 6.01947 6.06927 6.18570 6.24829 6.28597 6.42677 6.49457 6.55438 6.61309 6.83306 6.84226 7.51669 7.63335 7.81716 7.88142 8.14767 8.28105 8.43006 9.23058 9.84268 10.47218 11.41517 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.003759 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.028802 B = 7446.047172 C = 7882.132305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.119 3.881 3 N -0.254 5.254 4 N -0.275 5.275 5 C 0.049 3.951 6 C -0.070 4.070 7 C -0.167 4.167 8 C -0.168 4.168 9 C -0.195 4.195 10 C -0.019 4.019 11 C 0.602 3.398 12 O -0.532 6.532 13 N -0.586 5.586 14 C 0.090 3.910 15 C -0.125 4.125 16 C -0.110 4.110 17 H 0.100 0.900 18 C 0.141 3.859 19 N -0.602 5.602 20 C -0.233 4.233 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.916 5.916 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.176 3.824 29 C 0.119 3.881 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.167 0.833 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.035 0.965 47 H 0.019 0.981 48 H 0.252 0.748 49 H 0.054 0.946 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.355 2.501 -11.650 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.001 4.001 3 N -0.042 5.042 4 N -0.108 5.108 5 C -0.108 4.108 6 C -0.090 4.090 7 C -0.204 4.204 8 C -0.206 4.206 9 C -0.224 4.224 10 C -0.147 4.147 11 C 0.389 3.611 12 O -0.409 6.409 13 N -0.319 5.319 14 C -0.032 4.032 15 C -0.163 4.163 16 C -0.130 4.130 17 H 0.118 0.882 18 C 0.015 3.985 19 N -0.329 5.329 20 C -0.361 4.361 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.563 5.563 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.051 3.949 29 C 0.016 3.984 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.184 0.816 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.567 0.895 -12.454 18.438 hybrid contribution -0.917 0.795 0.888 1.504 sum 12.650 1.690 -11.565 17.223 Atomic orbital electron populations 1.22101 0.93189 1.03313 1.03763 1.22104 0.96491 0.76340 1.05122 1.45763 1.44410 1.12395 1.01621 1.73013 1.17819 1.06293 1.13639 1.20957 1.04683 0.92487 0.92644 1.19976 1.02384 0.86996 0.99609 1.23010 1.01396 0.95806 1.00230 1.23002 0.95422 1.02227 0.99958 1.22487 1.07419 0.97842 0.94640 1.21423 1.09823 0.93552 0.89924 1.16380 0.78896 0.83683 0.82173 1.90807 1.43839 1.22111 1.84125 1.47983 1.55408 1.21908 1.06590 1.22744 0.95168 0.86846 0.98491 1.22791 0.97711 1.01909 0.93917 1.23167 0.95700 0.96139 0.97995 0.88180 1.21314 0.85790 0.93108 0.98280 1.44222 1.02708 1.11053 1.74896 1.19059 0.83346 0.97752 1.35917 0.90347 1.24824 0.97947 0.96224 1.01246 1.69993 1.28063 1.07372 1.50882 0.86076 0.84166 0.77879 0.77822 1.20486 1.21813 1.21712 1.21141 0.86971 0.87611 0.99222 1.22557 0.99809 0.97994 0.78073 0.90080 0.90593 0.92224 0.90229 0.87040 0.88693 0.86631 0.88262 0.88169 0.88421 0.88616 0.81580 0.90055 0.90689 0.90922 0.89722 0.94648 0.96370 0.93741 0.92748 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.21 37.16 0.38 -1.88 16 2 C 0.12 1.61 6.35 -4.04 -0.03 1.58 16 3 N -0.25 -4.02 3.35 -57.14 -0.19 -4.21 16 4 N -0.27 -4.26 11.90 33.64 0.40 -3.86 16 5 C 0.05 0.68 6.85 -82.47 -0.57 0.11 16 6 C -0.07 -0.75 6.33 -91.77 -0.58 -1.33 16 7 C -0.17 -1.45 10.03 -26.69 -0.27 -1.72 16 8 C -0.17 -1.62 10.24 -26.69 -0.27 -1.90 16 9 C -0.20 -2.82 8.55 -38.98 -0.33 -3.15 16 10 C -0.02 -0.31 6.89 -82.06 -0.57 -0.88 16 11 C 0.60 11.37 7.30 -12.64 -0.09 11.28 16 12 O -0.53 -11.37 14.52 5.26 0.08 -11.30 16 13 N -0.59 -10.28 2.99 -164.08 -0.49 -10.77 16 14 C 0.09 1.22 4.66 -2.57 -0.01 1.21 16 15 C -0.12 -1.48 6.35 -24.63 -0.16 -1.64 16 16 C -0.11 -1.75 4.35 -87.74 -0.38 -2.13 16 17 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 18 C 0.14 2.75 6.45 -3.39 -0.02 2.73 16 19 N -0.60 -15.22 3.38 -172.35 -0.58 -15.80 16 20 C -0.23 -6.48 10.25 -15.06 -0.15 -6.63 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 23 N -0.92 -27.61 10.24 55.49 0.57 -27.04 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.18 4.38 4.97 -3.99 -0.02 4.36 16 29 C 0.12 2.27 3.53 -66.62 -0.24 2.03 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.08 1.30 7.68 -51.93 -0.40 0.90 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 1.57 6.65 -51.93 -0.35 1.23 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.10 0.89 7.22 -51.93 -0.37 0.52 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.17 2.04 4.41 -52.49 -0.23 1.80 16 42 H 0.08 0.92 5.84 -51.93 -0.30 0.62 16 43 H 0.08 1.07 6.86 -51.93 -0.36 0.71 16 44 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 45 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.02 0.35 6.52 -51.93 -0.34 0.01 16 48 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.05 1.53 7.32 -51.93 -0.38 1.15 16 50 H 0.05 1.51 6.82 -51.93 -0.35 1.16 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -33.98 389.15 -10.48 -44.46 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.70 Total: 3.52 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.40 Total: 1.79 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.30 Total: -61.68 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.98 -10.48 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075927362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.922 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds