Wall clock time and date at job start Wed Apr 1 2020 03:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47126 * 2 1 4 4 N 1.28441 * 125.18939 * 266.53846 * 3 2 1 5 5 C 1.30860 * 110.92867 * 179.81976 * 4 3 2 6 6 C 1.50702 * 126.07458 * 180.18243 * 5 4 3 7 7 C 1.52995 * 117.50327 * 164.04687 * 6 5 4 8 8 C 1.53000 * 117.49926 * 95.38012 * 6 5 4 9 9 C 1.39675 * 107.85924 * 0.43568 * 5 4 3 10 10 C 1.36598 * 125.18966 * 86.84029 * 3 2 1 11 11 C 1.47160 * 126.88461 * 359.97438 * 10 3 2 12 12 O 1.21625 * 120.00125 * 353.55399 * 11 10 3 13 13 N 1.34780 * 119.99899 * 173.56007 * 11 10 3 14 14 C 1.47399 * 125.58709 * 354.63692 * 13 11 10 15 15 C 1.54852 * 104.81110 * 204.61140 * 14 13 11 16 16 C 1.55123 * 101.77779 * 322.82308 * 15 14 13 17 17 H 1.09004 * 113.46206 * 159.24402 * 16 15 14 18 18 C 1.54044 * 108.25987 * 286.08515 * 16 15 14 19 19 N 1.46701 * 106.83097 * 135.80395 * 18 16 15 20 20 C 1.36937 * 125.32050 * 161.84344 * 19 18 16 21 21 H 1.07997 * 120.00144 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99608 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00091 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99627 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47310 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47024 * 120.00083 * 24 22 20 27 27 H 1.48503 * 109.46945 * 239.99995 * 24 22 20 28 28 C 1.46634 * 109.35479 * 341.82824 * 19 18 16 29 29 C 1.46732 * 125.59048 * 174.34164 * 13 11 10 30 30 H 1.09006 * 111.32490 * 56.11478 * 29 13 11 31 31 H 1.09001 * 109.47355 * 295.27938 * 1 2 3 32 32 H 1.09007 * 109.47098 * 55.27824 * 1 2 3 33 33 H 1.09002 * 109.47216 * 175.27849 * 1 2 3 34 34 H 1.09002 * 109.47107 * 119.99797 * 2 1 3 35 35 H 1.08998 * 109.47268 * 239.99931 * 2 1 3 36 36 H 1.08998 * 115.54604 * 309.72021 * 6 5 4 37 37 H 1.09003 * 117.49658 * 359.97438 * 7 6 5 38 38 H 1.08997 * 117.50110 * 145.02515 * 7 6 5 39 39 H 1.08998 * 117.49902 * 214.98434 * 8 6 5 40 40 H 1.08999 * 117.49972 * 359.97438 * 8 6 5 41 41 H 1.07999 * 127.32273 * 179.72477 * 9 5 4 42 42 H 1.08997 * 110.37343 * 323.44943 * 14 13 11 43 43 H 1.09001 * 110.36651 * 85.78600 * 14 13 11 44 44 H 1.09009 * 110.96570 * 80.93949 * 15 14 13 45 45 H 1.08996 * 110.97285 * 204.69879 * 15 14 13 46 46 H 1.08996 * 109.99168 * 255.15443 * 18 16 15 47 47 H 1.09005 * 109.98326 * 16.42473 * 18 16 15 48 48 H 0.97003 * 120.00117 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.75633 * 120.92263 * 28 19 18 50 50 H 1.09002 * 109.75563 * 241.62721 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3248 2.0580 -1.0478 5 6 2.7256 3.2615 -0.7262 6 6 3.1622 4.3375 -1.6867 7 6 3.2345 5.7709 -1.1566 8 6 2.1151 5.3659 -2.1191 9 6 2.6824 3.3698 0.6656 10 6 2.2227 2.1439 1.1146 11 6 1.9985 1.7428 2.5127 12 8 1.4790 0.6717 2.7622 13 7 2.3686 2.5624 3.5165 14 6 3.1044 3.8302 3.3618 15 6 3.8155 4.0436 4.7207 16 6 2.7530 3.5164 5.7204 17 1 3.1680 3.2420 6.6903 18 6 1.6186 4.5546 5.8111 19 7 0.3559 3.8091 5.7659 20 6 -0.8626 4.2909 6.1639 21 1 -0.9461 5.2963 6.5492 22 6 -1.9903 3.4864 6.0731 23 7 -1.8882 2.2606 5.6050 24 14 -3.6526 4.1439 6.6153 25 1 -3.4990 5.5391 7.0999 26 1 -4.5933 4.1191 5.4666 27 1 -4.1868 3.2958 7.7111 28 6 0.6025 2.4677 5.2276 29 6 2.0999 2.3420 4.9421 30 1 2.4903 1.3802 5.2750 31 1 -0.3634 0.4388 0.9292 32 1 -0.3634 0.5854 -0.8447 33 1 -0.3634 -1.0242 -0.0846 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.9057 4.0357 -2.4244 37 1 2.9658 5.9357 -0.1131 38 1 4.0252 6.4122 -1.5458 39 1 2.1700 5.7409 -3.1410 40 1 1.1103 5.2639 -1.7091 41 1 2.9509 4.2276 1.2643 42 1 3.8369 3.7482 2.5589 43 1 2.4124 4.6486 3.1632 44 1 4.7312 3.4549 4.7784 45 1 4.0214 5.1002 4.8916 46 1 1.6924 5.1061 6.7484 47 1 1.6757 5.2434 4.9682 48 1 -2.6763 1.6986 5.5412 49 1 0.3001 1.7165 5.9573 50 1 0.0395 2.3320 4.3042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075927362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:52 Heat of formation + Delta-G solvation = 94.255895 kcal Electronic energy + Delta-G solvation = -31767.376327 eV Core-core repulsion = 27797.646930 eV Total energy + Delta-G solvation = -3969.729397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.70087 -41.54075 -39.29370 -38.09624 -36.67092 -35.25207 -34.08536 -32.56110 -32.15984 -30.72532 -30.27940 -28.08805 -26.65374 -25.64534 -25.16237 -23.67784 -23.21854 -22.98953 -22.18809 -21.49711 -20.64083 -19.75040 -18.92390 -18.33167 -17.72130 -17.28212 -16.99690 -16.80304 -16.40159 -15.92418 -15.71863 -15.63501 -15.41862 -15.17538 -14.72765 -14.55587 -14.29832 -14.15558 -13.92015 -13.72067 -13.42853 -13.17333 -13.01259 -12.94021 -12.86957 -12.82209 -12.44916 -12.37436 -12.26133 -12.12890 -12.01985 -11.87452 -11.79321 -11.60755 -11.49764 -11.41149 -11.15042 -11.10149 -10.75802 -10.21254 -9.87111 -9.65106 -8.90861 -7.86040 -5.23618 0.16882 1.23757 1.41295 1.42714 1.44745 1.53217 1.97024 2.12681 2.46509 2.94854 3.20877 3.31765 3.40263 3.55345 3.61416 3.77516 3.80454 3.92258 3.99195 4.02142 4.08994 4.16481 4.19971 4.25719 4.32309 4.40711 4.42408 4.52132 4.54898 4.59384 4.66517 4.70852 4.81049 4.85791 4.87922 4.91849 5.03579 5.08351 5.09705 5.18463 5.26222 5.28064 5.35068 5.41041 5.43777 5.44992 5.60328 5.69116 5.74897 6.17143 6.42105 6.92443 7.05754 7.07510 7.77791 8.39169 9.22807 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.003759 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.028802 B = 7446.047172 C = 7882.132305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.117 3.883 3 N -0.263 5.263 4 N -0.286 5.286 5 C 0.047 3.953 6 C -0.085 4.085 7 C -0.148 4.148 8 C -0.172 4.172 9 C -0.184 4.184 10 C -0.046 4.046 11 C 0.592 3.408 12 O -0.573 6.573 13 N -0.587 5.587 14 C 0.082 3.918 15 C -0.105 4.105 16 C -0.096 4.096 17 H 0.122 0.878 18 C 0.134 3.866 19 N -0.623 5.623 20 C -0.238 4.238 21 H 0.090 0.910 22 C -0.070 4.070 23 N -0.953 5.953 24 Si 0.976 3.024 25 H -0.257 1.257 26 H -0.299 1.299 27 H -0.293 1.293 28 C 0.195 3.805 29 C 0.123 3.877 30 H 0.079 0.921 31 H 0.030 0.970 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.190 0.810 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.119 0.881 46 H 0.047 0.953 47 H 0.033 0.967 48 H 0.242 0.758 49 H 0.005 0.995 50 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.358 5.541 -12.473 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.002 4.002 3 N -0.051 5.051 4 N -0.119 5.119 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.186 4.186 8 C -0.210 4.210 9 C -0.213 4.213 10 C -0.174 4.174 11 C 0.380 3.620 12 O -0.453 6.453 13 N -0.319 5.319 14 C -0.039 4.039 15 C -0.143 4.143 16 C -0.116 4.116 17 H 0.140 0.860 18 C 0.009 3.991 19 N -0.350 5.350 20 C -0.367 4.367 21 H 0.108 0.892 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.805 3.195 25 H -0.181 1.181 26 H -0.226 1.226 27 H -0.220 1.220 28 C 0.069 3.931 29 C 0.018 3.982 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.207 0.793 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.137 0.863 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.023 0.977 50 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 16.626 4.003 -13.267 21.644 hybrid contribution -1.869 -0.110 1.111 2.177 sum 14.756 3.893 -12.156 19.511 Atomic orbital electron populations 1.22015 0.93695 1.04515 1.01190 1.22202 0.96007 0.76017 1.05997 1.45960 1.44691 1.12950 1.01470 1.73015 1.18161 1.07171 1.13580 1.21564 1.03476 0.92644 0.93185 1.20146 1.03406 0.86929 0.99970 1.23149 1.01189 0.94235 0.99995 1.23047 0.94501 1.02039 1.01446 1.22794 1.05990 0.97346 0.95148 1.21333 1.11928 0.95024 0.89102 1.16837 0.78286 0.83443 0.83427 1.90772 1.45567 1.24040 1.84922 1.48035 1.55256 1.23117 1.05493 1.23065 0.95376 0.84488 1.00990 1.22842 0.96798 1.04298 0.90352 1.23178 0.95640 0.93052 0.99692 0.85956 1.21620 0.84394 0.93905 0.99178 1.44535 1.04177 1.11716 1.74548 1.19540 0.84647 0.98041 1.34499 0.89210 1.25716 1.01799 0.96558 1.02230 1.70283 1.28198 1.08863 1.52903 0.85031 0.79458 0.78218 0.76808 1.18124 1.22606 1.21977 1.20657 0.90505 0.86741 0.95182 1.22287 0.95969 0.99870 0.80047 0.90274 0.95081 0.92137 0.87621 0.88200 0.85626 0.85153 0.88473 0.85388 0.86372 0.90750 0.79348 0.87217 0.91262 0.88183 0.86288 0.93450 0.94978 0.94898 0.97698 0.98417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 10.21 71.98 0.74 -3.82 16 2 C 0.12 3.28 6.35 86.38 0.55 3.83 16 3 N -0.26 -8.46 3.35 -334.69 -1.12 -9.58 16 4 N -0.29 -8.71 11.90 -47.49 -0.57 -9.28 16 5 C 0.05 1.26 6.85 43.05 0.30 1.56 16 6 C -0.08 -1.59 6.33 -11.54 -0.07 -1.66 16 7 C -0.15 -2.04 10.03 30.62 0.31 -1.73 16 8 C -0.17 -2.92 10.24 30.62 0.31 -2.61 16 9 C -0.18 -5.07 8.55 22.66 0.19 -4.88 16 10 C -0.05 -1.56 6.89 40.79 0.28 -1.28 16 11 C 0.59 23.42 7.30 86.59 0.63 24.05 16 12 O -0.57 -26.63 14.52 -4.11 -0.06 -26.69 16 13 N -0.59 -20.68 2.99 -791.28 -2.37 -23.04 16 14 C 0.08 1.97 4.66 86.84 0.40 2.38 16 15 C -0.11 -1.98 6.35 31.95 0.20 -1.78 16 16 C -0.10 -2.79 4.35 -8.93 -0.04 -2.83 16 17 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 18 C 0.13 4.95 6.45 86.69 0.56 5.50 16 19 N -0.62 -32.18 3.38 -699.20 -2.36 -34.54 16 20 C -0.24 -13.52 10.25 84.03 0.86 -12.66 16 21 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 22 C -0.07 -4.17 5.48 84.86 0.47 -3.70 16 23 N -0.95 -61.38 10.24 21.65 0.22 -61.16 16 24 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 25 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 28 C 0.20 10.36 4.97 86.34 0.43 10.79 16 29 C 0.12 4.76 3.53 45.72 0.16 4.92 16 30 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 31 H 0.03 1.17 7.68 -2.39 -0.02 1.15 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.10 3.03 6.65 -2.39 -0.02 3.02 16 35 H 0.13 2.67 8.14 -2.39 -0.02 2.66 16 36 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.10 1.39 7.22 -2.39 -0.02 1.38 16 38 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.19 4.10 4.41 -2.91 -0.01 4.08 16 42 H 0.11 2.06 5.84 -2.39 -0.01 2.04 16 43 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 44 H 0.10 1.47 8.14 -2.38 -0.02 1.46 16 45 H 0.12 1.57 8.08 -2.39 -0.02 1.55 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.03 1.13 6.52 -2.38 -0.02 1.12 16 48 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.00 0.30 7.32 -2.38 -0.02 0.28 16 50 H 0.00 -0.15 6.82 -2.39 -0.02 -0.17 16 Total: -1.00 -82.40 389.15 3.00 -79.40 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.95 Total: 19.39 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.28 Total: 16.08 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -6.19 Total: -137.60 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.06 Total: -26.69 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -82.40 3.00 -79.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075927362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.655 kcal (2) G-P(sol) polarization free energy of solvation -82.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds