Wall clock time and date at job start Wed Apr 1 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.45039 * 2 1 4 4 C 1.53134 * 109.46324 * 240.02763 * 2 1 3 5 5 C 1.53390 * 109.25026 * 170.17513 * 4 2 1 6 6 C 1.51101 * 108.19235 * 48.94463 * 5 4 2 7 7 N 1.29801 * 127.17160 * 164.30589 * 6 5 4 8 8 C 1.35895 * 108.84807 * 180.25077 * 7 6 5 9 9 C 1.47323 * 126.21006 * 179.85727 * 8 7 6 10 10 O 1.21621 * 119.99829 * 179.68826 * 9 8 7 11 11 N 1.34778 * 120.00048 * 359.70078 * 9 8 7 12 12 C 1.47407 * 125.58889 * 0.02562 * 11 9 8 13 13 C 1.54858 * 104.82037 * 204.36242 * 12 11 9 14 14 C 1.55174 * 101.73309 * 322.77388 * 13 12 11 15 15 H 1.08991 * 113.26045 * 158.95146 * 14 13 12 16 16 C 1.53758 * 108.30549 * 285.38841 * 14 13 12 17 17 N 1.46585 * 108.11157 * 124.37582 * 16 14 13 18 18 C 1.36935 * 125.31416 * 181.28514 * 17 16 14 19 19 H 1.08000 * 119.99832 * 10.01037 * 18 17 16 20 20 C 1.38812 * 120.00284 * 190.01197 * 18 17 16 21 21 N 1.31621 * 119.99608 * 9.44184 * 20 18 17 22 22 Si 1.86796 * 120.00304 * 189.43850 * 20 18 17 23 23 H 1.48504 * 109.47130 * 273.32753 * 22 20 18 24 24 H 1.48501 * 109.46951 * 33.32132 * 22 20 18 25 25 H 1.48498 * 109.47476 * 153.32399 * 22 20 18 26 26 C 1.46715 * 109.37686 * 1.54422 * 17 16 14 27 27 C 1.46703 * 125.58845 * 179.97438 * 11 9 8 28 28 H 1.09001 * 111.53142 * 56.14288 * 27 11 9 29 29 C 1.36573 * 107.57438 * 359.60062 * 8 7 6 30 30 N 1.34863 * 106.78846 * 0.18866 * 29 8 7 31 31 C 1.46580 * 127.50051 * 180.13757 * 30 29 8 32 32 H 1.09001 * 109.47413 * 300.02899 * 1 2 3 33 33 H 1.08994 * 109.47553 * 60.03041 * 1 2 3 34 34 H 1.09003 * 109.47201 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.51032 * 290.10840 * 4 2 1 36 36 H 1.08997 * 109.50841 * 50.19716 * 4 2 1 37 37 H 1.09002 * 109.72024 * 168.62462 * 5 4 2 38 38 H 1.09003 * 109.71616 * 289.22457 * 5 4 2 39 39 H 1.09006 * 110.36796 * 85.52671 * 12 11 9 40 40 H 1.09000 * 110.36806 * 323.20073 * 12 11 9 41 41 H 1.09000 * 110.97855 * 204.65917 * 13 12 11 42 42 H 1.09001 * 111.00652 * 80.89529 * 13 12 11 43 43 H 1.09002 * 109.74554 * 4.69909 * 16 14 13 44 44 H 1.08998 * 109.72818 * 244.03637 * 16 14 13 45 45 H 0.96998 * 120.00078 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.99028 * 101.13844 * 26 17 16 47 47 H 1.09001 * 109.99191 * 222.44939 * 26 17 16 48 48 H 1.08001 * 126.60233 * 180.20803 * 29 8 7 49 49 H 1.09004 * 109.58218 * 282.58174 * 31 30 29 50 50 H 1.08996 * 109.58865 * 42.85709 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0402 -0.7213 -1.2507 5 6 3.5541 -0.5079 -1.3754 6 6 4.1860 -0.8193 -0.0387 7 7 5.4429 -1.0348 0.2035 8 6 5.5980 -1.2839 1.5304 9 6 6.8668 -1.5805 2.2177 10 8 6.8761 -1.7813 3.4172 11 7 8.0173 -1.6290 1.5174 12 6 8.1483 -1.4056 0.0662 13 6 9.4416 -2.1570 -0.3350 14 6 10.3527 -1.8952 0.8935 15 1 11.1635 -2.6172 0.9897 16 6 10.8424 -0.4391 0.8301 17 7 10.4746 0.2205 2.0865 18 6 10.7201 1.5323 2.3932 19 1 11.0736 2.2085 1.6289 20 6 10.5146 1.9929 3.6865 21 7 10.2649 1.1396 4.6570 22 14 10.5924 3.8236 4.0494 23 1 11.9986 4.2145 4.3237 24 1 10.0875 4.5825 2.8770 25 1 9.7532 4.1293 5.2357 26 6 9.8078 -0.7457 2.9665 27 6 9.3447 -1.9118 2.0745 28 1 9.3616 -2.8642 2.6043 29 6 4.3648 -1.2037 2.1119 30 7 3.4887 -0.9127 1.1287 31 6 2.0406 -0.7217 1.2516 32 1 -0.3634 0.5143 0.8897 33 1 -0.3634 0.5133 -0.8902 34 1 -0.3634 -1.0277 0.0005 35 1 1.8285 -1.7874 -1.1680 36 1 1.5414 -0.3185 -2.1322 37 1 3.9579 -1.1745 -2.1374 38 1 3.7583 0.5277 -1.6472 39 1 8.2465 -0.3410 -0.1464 40 1 7.2892 -1.8209 -0.4606 41 1 9.8752 -1.7315 -1.2401 42 1 9.2515 -3.2230 -0.4597 43 1 10.3681 0.0728 -0.0072 44 1 11.9253 -0.4201 0.7076 45 1 10.1209 1.4614 5.5607 46 1 10.5063 -1.1055 3.7219 47 1 8.9468 -0.2804 3.4463 48 1 4.1355 -1.3456 3.1577 49 1 1.5504 -1.6914 1.3398 50 1 1.8249 -0.1216 2.1356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075944811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:33 Heat of formation + Delta-G solvation = 57.178332 kcal Electronic energy + Delta-G solvation = -31331.142091 eV Core-core repulsion = 27359.804891 eV Total energy + Delta-G solvation = -3971.337201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.41155 -39.78222 -37.83005 -37.08287 -34.53815 -33.56516 -32.12994 -31.60707 -30.64475 -28.97121 -28.54300 -26.90825 -26.09575 -24.48597 -24.25751 -23.18860 -21.79332 -21.55322 -20.37748 -19.42842 -19.19140 -18.45270 -17.16830 -16.65498 -16.37222 -15.91997 -15.53127 -15.08078 -14.86565 -14.74022 -14.34210 -14.07054 -13.87432 -13.80335 -13.65480 -13.46967 -13.01675 -12.88904 -12.71565 -12.52675 -12.34597 -11.92770 -11.77180 -11.70274 -11.53732 -11.36701 -11.31311 -11.22332 -11.03318 -10.80051 -10.64343 -10.35403 -10.14416 -10.00869 -9.84009 -9.73752 -9.69060 -9.56689 -9.32675 -8.42497 -8.38521 -7.80373 -6.61772 -5.58036 -2.91416 1.79038 2.52598 2.56704 3.48057 3.52768 3.55504 3.64639 3.91805 4.02498 4.08188 4.18364 4.24414 4.61201 4.71185 4.79505 4.89206 4.94534 4.96534 4.99107 5.06382 5.13163 5.21354 5.35955 5.41582 5.43624 5.47208 5.50423 5.58896 5.61451 5.70379 5.76076 5.76908 5.88262 6.00224 6.08060 6.10616 6.22655 6.28557 6.50464 6.55992 6.61112 6.72222 6.81424 6.86942 6.99450 7.13151 7.72376 7.74517 7.92266 8.00060 8.26781 8.44932 8.88118 9.35626 9.98271 10.64256 11.53673 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.003301 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.992982 B = 8481.319189 C = 9498.342009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.120 4.120 5 C -0.032 4.032 6 C 0.201 3.799 7 N -0.450 5.450 8 C -0.044 4.044 9 C 0.613 3.387 10 O -0.543 6.543 11 N -0.584 5.584 12 C 0.112 3.888 13 C -0.128 4.128 14 C -0.109 4.109 15 H 0.095 0.905 16 C 0.143 3.857 17 N -0.598 5.598 18 C -0.231 4.231 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.912 5.912 22 Si 0.907 3.093 23 H -0.288 1.288 24 H -0.283 1.283 25 H -0.291 1.291 26 C 0.173 3.827 27 C 0.114 3.886 28 H 0.078 0.922 29 C 0.030 3.970 30 N -0.456 5.456 31 C 0.107 3.893 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.024 0.976 44 H 0.020 0.980 45 H 0.252 0.748 46 H 0.038 0.962 47 H 0.069 0.931 48 H 0.187 0.813 49 H 0.086 0.914 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.246 -7.260 -14.199 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.071 4.071 6 C -0.062 4.062 7 N -0.170 5.170 8 C -0.174 4.174 9 C 0.400 3.600 10 O -0.421 6.421 11 N -0.316 5.316 12 C -0.011 4.011 13 C -0.166 4.166 14 C -0.129 4.129 15 H 0.113 0.887 16 C 0.017 3.983 17 N -0.324 5.324 18 C -0.359 4.359 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.558 5.558 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.209 1.209 25 H -0.217 1.217 26 C 0.047 3.953 27 C 0.010 3.990 28 H 0.096 0.904 29 C -0.108 4.108 30 N -0.139 5.139 31 C -0.015 4.015 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.037 0.963 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.204 0.796 49 H 0.104 0.896 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.799 -7.204 -13.863 25.221 hybrid contribution -0.515 1.086 1.006 1.568 sum -20.314 -6.118 -12.857 24.807 Atomic orbital electron populations 1.21763 0.93170 1.02517 1.02746 1.21482 0.96953 1.00537 0.93659 0.89686 1.21762 0.94816 1.01291 0.97932 1.20200 0.93553 1.03503 0.89808 1.23540 0.87349 1.05906 0.89418 1.70488 1.14816 1.17066 1.14628 1.20668 0.93808 1.12568 0.90308 1.16406 0.81019 0.77259 0.85270 1.90803 1.86158 1.51605 1.13485 1.47965 1.06080 1.68346 1.09159 1.22385 0.97705 1.00361 0.80676 1.22863 0.95808 1.00048 0.97891 1.23041 0.96831 0.98734 0.94273 0.88723 1.21171 0.96645 0.89676 0.90823 1.44144 1.67173 1.07742 1.13324 1.18925 1.39469 0.83717 0.93801 0.90825 1.24824 1.02259 0.97700 0.95490 1.69980 1.53968 1.31886 0.99976 0.86211 0.77364 0.85213 0.77432 1.21567 1.20853 1.21698 1.21307 0.96938 0.86717 0.90313 1.22674 0.80808 0.99941 0.95576 0.90372 1.22378 0.88936 1.04433 0.95095 1.45246 1.08324 1.52261 1.08022 1.22122 0.77072 1.02077 1.00253 0.92055 0.91541 0.92121 0.91095 0.89865 0.88532 0.89137 0.91591 0.89059 0.90320 0.91489 0.95773 0.96260 0.93751 0.94449 0.91272 0.79616 0.89558 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.52 9.17 37.15 0.34 -0.18 16 2 C -0.11 -0.59 2.73 -90.43 -0.25 -0.84 16 3 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 4 C -0.12 -0.65 5.25 -26.46 -0.14 -0.79 16 5 C -0.03 -0.26 6.33 -27.48 -0.17 -0.43 16 6 C 0.20 2.56 7.64 -154.64 -1.18 1.37 16 7 N -0.45 -7.38 8.36 -7.01 -0.06 -7.43 16 8 C -0.04 -0.82 6.81 -82.97 -0.56 -1.38 16 9 C 0.61 13.42 7.48 -12.56 -0.09 13.32 16 10 O -0.54 -13.46 16.60 5.26 0.09 -13.37 16 11 N -0.58 -12.21 3.02 -163.45 -0.49 -12.71 16 12 C 0.11 1.98 5.67 -2.57 -0.01 1.96 16 13 C -0.13 -1.93 6.30 -24.60 -0.16 -2.08 16 14 C -0.11 -2.00 4.25 -87.87 -0.37 -2.37 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 16 C 0.14 3.13 6.41 -3.60 -0.02 3.11 16 17 N -0.60 -16.35 3.38 -171.95 -0.58 -16.93 16 18 C -0.23 -6.84 10.21 -15.06 -0.15 -7.00 16 19 H 0.07 2.11 7.85 -52.49 -0.41 1.69 16 20 C -0.01 -0.17 5.41 -17.43 -0.09 -0.26 16 21 N -0.91 -28.85 10.60 55.49 0.59 -28.26 16 22 Si 0.91 23.42 29.56 -169.99 -5.03 18.39 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 26 C 0.17 4.67 4.92 -3.43 -0.02 4.66 16 27 C 0.11 2.47 3.65 -66.12 -0.24 2.22 16 28 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 29 C 0.03 0.44 11.32 -16.82 -0.19 0.25 16 30 N -0.46 -5.35 3.11 -113.42 -0.35 -5.70 16 31 C 0.11 0.76 6.25 -3.87 -0.02 0.74 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 36 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.30 7.49 -51.93 -0.39 0.91 16 40 H 0.09 1.51 6.12 -51.93 -0.32 1.19 16 41 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.02 0.52 6.78 -51.93 -0.35 0.17 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.04 1.10 7.79 -51.93 -0.40 0.70 16 47 H 0.07 2.17 6.34 -51.93 -0.33 1.84 16 48 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 49 H 0.09 0.50 8.13 -51.93 -0.42 0.07 16 50 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -37.75 386.34 -11.45 -49.20 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.09 Total: -1.32 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -3.35 Total: 12.31 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -0.90 Total: -71.03 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.03 Total: 18.39 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.75 -11.45 -49.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075944811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.377 kcal (2) G-P(sol) polarization free energy of solvation -37.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds